Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00094 * 2 1 4 4 C 1.34777 * 119.99908 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00049 * 0.02562 * 4 2 1 6 6 C 1.50702 * 119.99708 * 180.02562 * 4 2 1 7 7 H 1.09004 * 115.54925 * 295.67375 * 6 4 2 8 8 C 1.53072 * 117.53294 * 149.96611 * 6 4 2 9 9 C 1.53002 * 117.49868 * 81.34968 * 6 4 2 10 10 H 1.09003 * 117.49357 * 215.02157 * 9 6 4 11 11 C 1.50693 * 117.49949 * 0.02562 * 9 6 4 12 12 O 1.21285 * 119.99555 * 88.65411 * 11 9 6 13 13 N 1.34777 * 120.00497 * 268.64958 * 11 9 6 14 14 C 1.46497 * 119.99953 * 179.72704 * 13 11 9 15 15 C 1.53002 * 109.46759 * 180.27604 * 14 13 11 16 16 C 1.50704 * 109.46746 * 179.97438 * 15 14 13 17 17 C 1.29454 * 117.69554 * 94.74110 * 16 15 14 18 18 C 1.50309 * 123.65688 * 180.58309 * 17 16 15 19 19 N 1.47007 * 109.20451 * 349.50192 * 18 17 16 20 20 C 1.36938 * 121.37714 * 222.76532 * 19 18 17 21 21 H 1.07999 * 120.00369 * 152.98381 * 20 19 18 22 22 C 1.38813 * 119.99642 * 332.98163 * 20 19 18 23 23 N 1.31623 * 120.00060 * 157.48967 * 22 20 19 24 24 Si 1.86801 * 120.00222 * 337.48139 * 22 20 19 25 25 H 1.48504 * 109.46907 * 91.63530 * 24 22 20 26 26 H 1.48498 * 109.47393 * 211.63514 * 24 22 20 27 27 H 1.48497 * 109.46943 * 331.64034 * 24 22 20 28 28 C 1.47334 * 117.24879 * 42.73323 * 19 18 17 29 29 C 1.49973 * 117.69268 * 274.99623 * 16 15 14 30 30 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47448 * 300.00085 * 1 2 3 32 32 H 1.08996 * 109.46966 * 60.00495 * 1 2 3 33 33 H 1.08999 * 109.46653 * 270.00144 * 3 2 1 34 34 H 1.09009 * 109.47154 * 29.99645 * 3 2 1 35 35 H 1.08999 * 109.47339 * 149.99284 * 3 2 1 36 36 H 1.09000 * 117.49948 * 145.04391 * 8 6 4 37 37 H 1.09001 * 117.51076 * 0.02562 * 8 6 4 38 38 H 0.97002 * 119.99777 * 0.02562 * 13 11 9 39 39 H 1.09001 * 109.47293 * 300.27516 * 14 13 11 40 40 H 1.08995 * 109.47496 * 60.27818 * 14 13 11 41 41 H 1.08993 * 109.47234 * 299.99770 * 15 14 13 42 42 H 1.08996 * 109.47460 * 59.99965 * 15 14 13 43 43 H 1.08004 * 118.17060 * 0.86142 * 17 16 15 44 44 H 1.09004 * 109.67585 * 229.47910 * 18 17 16 45 45 H 1.09006 * 109.33536 * 109.31443 * 18 17 16 46 46 H 0.96999 * 119.99981 * 180.02562 * 23 22 20 47 47 H 1.09008 * 109.77936 * 178.62145 * 28 19 18 48 48 H 1.09007 * 109.77767 * 57.81420 * 28 19 18 49 49 H 1.09000 * 109.31464 * 281.29231 * 29 16 15 50 50 H 1.08991 * 109.31534 * 40.91312 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 1 4.1163 -0.7413 -0.8852 8 6 4.3533 -2.3421 0.6810 9 6 4.3518 -0.9627 1.3431 10 1 5.2865 -0.4019 1.3397 11 6 3.4870 -0.7774 2.5631 12 8 3.1192 -1.7432 3.1980 13 7 3.1222 0.4614 2.9489 14 6 2.2765 0.6410 4.1315 15 6 2.0065 2.1320 4.3436 16 6 1.1360 2.3168 5.5598 17 6 1.7223 2.5599 6.6881 18 6 0.9866 2.7537 7.9844 19 7 -0.4527 2.8736 7.7104 20 6 -1.2235 3.8111 8.3445 21 1 -2.1147 4.1904 7.8667 22 6 -0.8595 4.2739 9.6016 23 7 -1.2961 5.4412 10.0251 24 14 0.2500 3.2401 10.6923 25 1 1.6669 3.6161 10.4550 26 1 -0.0938 3.4797 12.1169 27 1 0.0590 1.8028 10.3719 28 6 -1.0315 1.9440 6.7248 29 6 -0.3482 2.2002 5.3788 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.3791 1.5833 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1384 0.5139 36 1 5.2888 -2.6887 0.2419 37 1 3.7286 -3.1156 1.1277 38 1 3.4162 1.2338 2.4409 39 1 1.3315 0.1178 3.9853 40 1 2.7846 0.2358 5.0065 41 1 2.9514 2.6552 4.4898 42 1 1.4984 2.5374 3.4686 43 1 2.7999 2.6317 6.6976 44 1 1.3407 3.6602 8.4754 45 1 1.1638 1.8948 8.6319 46 1 -1.0414 5.7647 10.9033 47 1 -2.1030 2.1224 6.6343 48 1 -0.8533 0.9155 7.0389 49 1 -0.7328 3.1254 4.9496 50 1 -0.5652 1.3722 4.7041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161225757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = -26.144977 kcal Electronic energy + Delta-G solvation = -29589.222158 eV Core-core repulsion = 25617.467787 eV Total energy + Delta-G solvation = -3971.754371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76214 -40.33512 -39.67401 -37.34748 -36.70141 -36.54807 -35.15162 -33.50243 -31.90957 -30.59898 -29.32525 -27.68892 -27.29101 -25.53502 -24.94248 -24.15787 -23.49373 -22.57872 -21.40614 -20.25368 -19.64032 -18.74954 -17.76441 -17.47563 -17.38791 -17.32176 -17.01287 -16.61115 -16.31334 -16.02842 -15.77495 -15.56217 -15.37522 -15.01821 -14.88649 -14.36578 -14.17341 -14.16423 -14.05056 -13.75249 -13.46494 -13.40788 -13.36756 -13.09310 -13.04767 -12.91187 -12.83944 -12.64019 -12.39549 -12.16326 -12.02399 -11.78912 -11.62064 -11.57899 -11.38118 -11.08126 -10.90602 -10.72067 -10.17025 -9.71008 -9.66004 -8.96991 -8.20267 -5.50413 1.26700 1.30203 1.30801 1.38632 1.47613 1.52160 1.92565 2.10326 2.39240 2.67925 3.01766 3.31304 3.40244 3.61189 3.68880 3.81965 3.89587 4.01928 4.08806 4.22311 4.27644 4.30268 4.41704 4.42291 4.47781 4.50521 4.57276 4.64529 4.67394 4.70974 4.77954 4.82495 4.85021 4.89744 4.91832 4.94073 4.96875 5.04840 5.09099 5.13268 5.30428 5.36950 5.45060 5.71843 5.84082 6.05749 6.17831 6.28122 6.48675 6.86828 7.07107 7.19629 7.58134 8.03129 8.99784 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021049 B = 0.002465 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.912162 B =11355.616243 C =11960.314869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.067 3.933 4 C 0.521 3.479 5 O -0.589 6.589 6 C -0.153 4.153 7 H 0.185 0.815 8 C -0.129 4.129 9 C -0.159 4.159 10 H 0.188 0.812 11 C 0.525 3.475 12 O -0.586 6.586 13 N -0.705 5.705 14 C 0.133 3.867 15 C -0.077 4.077 16 C -0.110 4.110 17 C -0.174 4.174 18 C 0.147 3.853 19 N -0.622 5.622 20 C -0.247 4.247 21 H 0.055 0.945 22 C -0.030 4.030 23 N -0.952 5.952 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.307 1.307 27 H -0.271 1.271 28 C 0.135 3.865 29 C -0.090 4.090 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.070 0.930 38 H 0.418 0.582 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.060 0.940 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.477 -7.178 -27.331 32.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.344 5.344 3 C -0.074 4.074 4 C 0.310 3.690 5 O -0.469 6.469 6 C -0.173 4.173 7 H 0.202 0.798 8 C -0.167 4.167 9 C -0.180 4.180 10 H 0.205 0.795 11 C 0.312 3.688 12 O -0.466 6.466 13 N -0.358 5.358 14 C 0.009 3.991 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.193 4.193 18 C 0.023 3.977 19 N -0.347 5.347 20 C -0.376 4.376 21 H 0.073 0.927 22 C -0.225 4.225 23 N -0.598 5.598 24 Si 0.768 3.232 25 H -0.196 1.196 26 H -0.236 1.236 27 H -0.197 1.197 28 C 0.011 3.989 29 C -0.128 4.128 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.169 0.831 37 H 0.089 0.911 38 H 0.257 0.743 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.088 0.912 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.844 -8.242 -26.749 32.164 hybrid contribution -0.208 0.001 1.270 1.287 sum 15.636 -8.241 -25.479 31.010 Atomic orbital electron populations 1.21745 0.79187 1.02817 1.02970 1.47779 1.07403 1.06979 1.72227 1.22188 0.97550 0.83609 1.04085 1.20440 0.90125 0.83251 0.75187 1.90698 1.71069 1.33376 1.51789 1.22431 0.89859 1.06703 0.98349 0.79793 1.23103 1.03168 0.90431 0.99990 1.22526 1.01912 1.04765 0.88776 0.79461 1.20357 0.79921 0.82812 0.85719 1.90748 1.56883 1.41647 1.57288 1.45852 1.51955 1.08165 1.29809 1.21148 0.93870 0.96727 0.87378 1.20814 0.99976 0.93956 0.96695 1.20626 0.95419 1.00202 0.94797 1.22512 1.00083 1.02345 0.94356 1.20166 0.83721 0.98374 0.95487 1.44577 1.03541 1.38336 1.48229 1.18820 1.07562 1.13491 0.97720 0.92723 1.25837 1.00778 0.97630 0.98294 1.69972 1.50528 1.18751 1.20589 0.86005 0.79310 0.80213 0.77691 1.19587 1.23591 1.19652 1.21222 0.97032 0.91702 0.88981 1.20721 0.92556 1.01982 0.97579 0.92634 0.91194 0.89759 0.89935 0.89297 0.89766 0.83100 0.91110 0.74349 0.93400 0.93109 0.88869 0.88499 0.85487 0.92537 0.95535 0.92846 0.92128 0.95066 0.91163 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.69 127.77 1.37 2.50 16 2 N -0.61 -8.61 3.27 -871.89 -2.85 -11.46 16 3 C 0.07 0.27 10.06 127.77 1.28 1.56 16 4 C 0.52 10.55 6.35 87.66 0.56 11.10 16 5 O -0.59 -18.73 16.00 -3.03 -0.05 -18.77 16 6 C -0.15 -1.65 4.64 -11.51 -0.05 -1.70 16 7 H 0.18 0.32 8.14 -2.38 -0.02 0.30 16 8 C -0.13 -1.80 9.56 30.62 0.29 -1.51 16 9 C -0.16 -1.67 5.31 -11.54 -0.06 -1.73 16 10 H 0.19 0.16 8.14 -2.39 -0.02 0.14 16 11 C 0.52 10.62 6.48 87.65 0.57 11.19 16 12 O -0.59 -19.33 16.45 -3.05 -0.05 -19.38 16 13 N -0.70 -10.06 5.20 -463.07 -2.41 -12.47 16 14 C 0.13 2.65 5.66 86.38 0.49 3.14 16 15 C -0.08 -1.31 5.32 29.85 0.16 -1.15 16 16 C -0.11 -3.04 5.11 -15.14 -0.08 -3.12 16 17 C -0.17 -5.67 9.47 27.10 0.26 -5.41 16 18 C 0.15 6.36 4.43 85.41 0.38 6.73 16 19 N -0.62 -29.90 2.76 -703.38 -1.94 -31.84 16 20 C -0.25 -14.17 10.09 84.03 0.85 -13.32 16 21 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 22 C -0.03 -1.78 5.20 84.86 0.44 -1.34 16 23 N -0.95 -60.03 13.97 21.65 0.30 -59.73 16 24 Si 0.94 47.26 24.30 68.60 1.67 48.93 16 25 H -0.27 -12.68 6.70 99.48 0.67 -12.01 16 26 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 27 H -0.27 -13.45 6.70 99.48 0.67 -12.78 16 28 C 0.14 5.29 6.58 86.25 0.57 5.86 16 29 C -0.09 -2.69 5.95 29.65 0.18 -2.52 16 30 H 0.05 1.20 6.90 -2.39 -0.02 1.18 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.09 0.21 8.07 -2.38 -0.02 0.19 16 35 H 0.08 0.08 4.29 -2.39 -0.01 0.07 16 36 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 1.70 7.65 -2.39 -0.02 1.68 16 38 H 0.42 2.43 6.84 -92.71 -0.63 1.80 16 39 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.27 7.79 -2.39 -0.02 1.25 16 42 H 0.10 1.23 8.11 -2.39 -0.02 1.21 16 43 H 0.13 3.37 7.74 -2.91 -0.02 3.34 16 44 H 0.06 2.67 5.60 -2.39 -0.01 2.66 16 45 H 0.03 1.19 6.42 -2.38 -0.02 1.17 16 46 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.06 2.38 7.96 -2.38 -0.02 2.36 16 48 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 Total: -1.00 -90.07 396.54 2.09 -87.98 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.23 Total: 6.46 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 7.19 Total: 10.29 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -6.90 Total: -115.51 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.10 Total: -38.15 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -90.07 2.09 -87.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161225757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.839 kcal (2) G-P(sol) polarization free energy of solvation -90.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds