Wall clock time and date at job start Tue Mar 31 2020 18:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99852 * 2 1 4 4 C 1.34773 * 119.99762 * 179.97438 * 2 1 3 5 5 O 1.21275 * 120.00265 * 5.29622 * 4 2 1 6 6 C 1.50704 * 119.99761 * 185.29584 * 4 2 1 7 7 C 1.50693 * 115.55311 * 66.82650 * 6 4 2 8 8 O 1.21281 * 120.00496 * 219.94263 * 7 6 4 9 9 N 1.34778 * 119.99872 * 39.66672 * 7 6 4 10 10 C 1.46495 * 120.00403 * 175.32633 * 9 7 6 11 11 C 1.53004 * 109.47659 * 180.02562 * 10 9 7 12 12 C 1.50691 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.29452 * 117.69733 * 94.99794 * 12 11 10 14 14 C 1.50324 * 123.65186 * 180.86058 * 13 12 11 15 15 N 1.47011 * 109.16721 * 349.01860 * 14 13 12 16 16 C 1.36938 * 121.37579 * 222.97317 * 15 14 13 17 17 H 1.08000 * 119.99815 * 152.37531 * 16 15 14 18 18 C 1.38810 * 120.00072 * 332.38005 * 16 15 14 19 19 N 1.31625 * 119.99917 * 349.93819 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 169.94164 * 18 16 15 21 21 H 1.48504 * 109.47181 * 94.98999 * 20 18 16 22 22 H 1.48497 * 109.46983 * 214.98997 * 20 18 16 23 23 H 1.48498 * 109.47007 * 334.99061 * 20 18 16 24 24 C 1.47335 * 117.24761 * 42.94703 * 15 14 13 25 25 C 1.49970 * 117.69258 * 274.73917 * 12 11 10 26 26 C 1.53002 * 117.51500 * 212.53338 * 6 4 2 27 27 C 1.52998 * 60.00033 * 107.48165 * 26 6 4 28 28 H 1.09000 * 109.47319 * 240.00430 * 1 2 3 29 29 H 1.08996 * 109.47257 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46991 * 120.00355 * 1 2 3 31 31 H 1.09008 * 109.47118 * 274.17606 * 3 2 1 32 32 H 1.08999 * 109.47528 * 34.17644 * 3 2 1 33 33 H 1.09002 * 109.47611 * 154.17877 * 3 2 1 34 34 H 0.97005 * 120.00156 * 355.32453 * 9 7 6 35 35 H 1.09003 * 109.46975 * 299.99595 * 10 9 7 36 36 H 1.08995 * 109.47199 * 59.99555 * 10 9 7 37 37 H 1.09003 * 109.46510 * 299.99774 * 11 10 9 38 38 H 1.08996 * 109.46750 * 59.99399 * 11 10 9 39 39 H 1.08002 * 118.17339 * 0.88131 * 13 12 11 40 40 H 1.08998 * 109.52704 * 108.93017 * 14 13 12 41 41 H 1.09002 * 109.51874 * 229.11517 * 14 13 12 42 42 H 0.96995 * 120.00109 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.77584 * 57.81420 * 24 15 14 44 44 H 1.08998 * 109.78021 * 178.61517 * 24 15 14 45 45 H 1.09008 * 109.31197 * 281.29025 * 25 12 11 46 46 H 1.08995 * 109.31645 * 40.71196 * 25 12 11 47 47 H 1.09006 * 117.49143 * 214.96998 * 26 6 4 48 48 H 1.08995 * 117.50386 * 359.97438 * 26 6 4 49 49 H 1.09009 * 117.49486 * 252.50721 * 27 26 6 50 50 H 1.08994 * 117.52312 * 107.48356 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5364 -2.2153 -0.0960 6 6 3.6411 -1.1699 0.1210 7 6 4.1881 -0.6938 1.4419 8 8 5.1782 0.0060 1.4715 9 7 3.5738 -1.0410 2.5902 10 6 4.1617 -0.6649 3.8783 11 6 3.2732 -1.1774 5.0136 12 6 3.8783 -0.7911 6.3385 13 6 3.4572 0.2978 6.8977 14 6 3.9807 0.8180 8.2073 15 7 4.8122 -0.2163 8.8399 16 6 4.7198 -0.4846 10.1795 17 1 4.9597 -1.4700 10.5506 18 6 4.3179 0.5100 11.0605 19 7 4.2169 1.7551 10.6457 20 14 3.9205 0.0815 12.8347 21 1 5.1199 0.3103 13.6798 22 1 2.8067 0.9391 13.3135 23 1 3.5189 -1.3455 12.9212 24 6 5.7485 -0.9526 7.9728 25 6 4.9217 -1.6984 6.9192 26 6 4.4061 -2.2807 -0.6015 27 6 4.4512 -0.8480 -1.1364 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3143 1.6208 -1.0250 32 1 1.6429 2.0085 0.5773 33 1 3.1803 1.1209 0.4476 34 1 2.7423 -1.5398 2.5638 35 1 5.1545 -1.1060 3.9671 36 1 4.2396 0.4205 3.9390 37 1 2.2802 -0.7367 4.9250 38 1 3.1958 -2.2629 4.9526 39 1 2.6866 0.8639 6.3955 40 1 4.5810 1.7106 8.0310 41 1 3.1445 1.0639 8.8619 42 1 3.9364 2.4502 11.2613 43 1 6.4284 -0.2532 7.4863 44 1 6.3172 -1.6676 8.5673 45 1 4.4356 -2.5586 7.3797 46 1 5.5819 -2.0441 6.1239 47 1 5.3051 -2.6671 -0.1211 48 1 3.8230 -3.0100 -1.1637 49 1 3.8976 -0.6346 -2.0509 50 1 5.3795 -0.2915 -1.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161683348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:05 Heat of formation + Delta-G solvation = -3.089115 kcal Electronic energy + Delta-G solvation = -29166.000485 eV Core-core repulsion = 25195.245891 eV Total energy + Delta-G solvation = -3970.754594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22743 -39.35700 -37.95460 -36.56826 -35.97465 -35.36273 -33.59179 -31.41580 -29.88077 -29.07560 -28.63323 -27.08701 -25.76285 -24.41892 -22.97301 -22.89878 -22.43186 -21.47760 -20.92587 -19.40051 -18.22020 -17.60428 -16.75096 -16.65314 -16.19529 -15.74160 -15.59205 -15.53412 -15.04205 -14.85337 -14.42208 -14.08489 -13.93536 -13.58936 -13.46002 -13.32622 -13.25759 -13.07539 -12.97133 -12.66039 -12.38632 -12.21992 -12.06235 -12.00899 -11.60068 -11.51893 -11.43648 -11.03032 -11.01047 -10.88146 -10.74437 -10.50865 -10.30906 -10.22831 -9.96630 -9.83170 -9.53952 -9.25772 -9.17725 -8.66137 -7.92679 -6.66356 -5.78159 -3.21262 1.99436 2.13821 2.43176 2.69384 3.01927 3.37583 3.41018 3.44198 3.46310 3.91190 4.26823 4.34353 4.37903 4.49441 4.68519 4.81319 4.91074 5.06550 5.08659 5.16511 5.17625 5.24329 5.27007 5.33015 5.36809 5.40600 5.42221 5.55093 5.63064 5.67041 5.77242 5.93674 5.98650 6.01847 6.14088 6.21003 6.26196 6.39941 6.56776 6.78081 6.80446 6.92210 7.19403 7.24847 7.34456 7.42019 7.62399 7.76363 7.88903 7.89767 8.42484 9.22307 9.83637 10.43983 11.32112 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.002166 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.297360 B =12925.047004 C =13389.668060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.613 5.613 3 C 0.072 3.928 4 C 0.551 3.449 5 O -0.526 6.526 6 C -0.203 4.203 7 C 0.556 3.444 8 O -0.528 6.528 9 N -0.721 5.721 10 C 0.125 3.875 11 C -0.092 4.092 12 C -0.142 4.142 13 C -0.146 4.146 14 C 0.198 3.802 15 N -0.596 5.596 16 C -0.245 4.245 17 H 0.067 0.933 18 C 0.000 4.000 19 N -0.911 5.911 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.143 3.857 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.128 4.128 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.052 0.948 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.106 0.894 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 -3.249 -25.479 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.347 5.347 3 C -0.071 4.071 4 C 0.337 3.663 5 O -0.402 6.402 6 C -0.209 4.209 7 C 0.341 3.659 8 O -0.405 6.405 9 N -0.372 5.372 10 C 0.002 3.998 11 C -0.130 4.130 12 C -0.143 4.143 13 C -0.165 4.165 14 C 0.073 3.927 15 N -0.319 5.319 16 C -0.375 4.375 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.017 3.983 25 C -0.130 4.130 26 C -0.157 4.157 27 C -0.166 4.166 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.124 0.876 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.650 -3.152 -25.344 25.959 hybrid contribution -0.839 -0.192 0.953 1.284 sum -5.489 -3.344 -24.391 25.224 Atomic orbital electron populations 1.21691 0.78345 1.02737 1.02635 1.47683 1.07299 1.06353 1.73316 1.21985 0.97903 0.84791 1.02375 1.19260 0.87172 0.83403 0.76422 1.90730 1.69446 1.31162 1.48814 1.21528 0.92412 1.11743 0.95228 1.18916 0.83561 0.79807 0.83635 1.90750 1.25995 1.36798 1.86941 1.46078 1.27350 1.57675 1.06053 1.21512 0.97374 1.00801 0.80109 1.20911 0.98124 1.01098 0.92846 1.20211 1.01008 0.98136 0.94973 1.23147 0.98088 0.95954 0.99356 1.19696 0.95038 0.89968 0.87991 1.44096 1.41110 1.42108 1.04589 1.19173 1.41624 0.94652 0.82050 0.91571 1.25106 1.01855 0.94907 0.97927 1.69977 1.51679 0.99339 1.34609 0.86218 0.77735 0.77609 0.84864 1.21445 1.21609 1.20471 1.20996 0.91347 0.94369 0.91626 1.20797 0.96329 0.97690 0.98219 1.23071 1.00672 0.91837 1.00137 1.23127 1.01302 0.98936 0.93224 0.91771 0.90289 0.91820 0.91971 0.90667 0.90252 0.76555 0.91015 0.90969 0.91595 0.91384 0.89168 0.94386 0.89245 0.93631 0.95810 0.92557 0.91918 0.92946 0.87124 0.86804 0.87590 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 10.17 59.85 0.61 1.20 16 2 N -0.61 -5.11 3.27 -189.51 -0.62 -5.73 16 3 C 0.07 0.49 10.14 59.84 0.61 1.10 16 4 C 0.55 5.72 6.21 -10.98 -0.07 5.65 16 5 O -0.53 -6.93 16.74 5.56 0.09 -6.83 16 6 C -0.20 -1.97 1.29 -156.81 -0.20 -2.17 16 7 C 0.56 6.62 5.62 -10.99 -0.06 6.56 16 8 O -0.53 -7.79 16.09 5.56 0.09 -7.70 16 9 N -0.72 -8.21 5.49 -60.30 -0.33 -8.54 16 10 C 0.12 1.60 5.66 -4.04 -0.02 1.58 16 11 C -0.09 -1.22 5.32 -27.89 -0.15 -1.37 16 12 C -0.14 -2.46 5.11 -100.99 -0.52 -2.97 16 13 C -0.15 -2.82 9.47 -35.78 -0.34 -3.16 16 14 C 0.20 4.77 5.17 -5.10 -0.03 4.75 16 15 N -0.60 -15.15 3.00 -173.56 -0.52 -15.67 16 16 C -0.25 -6.79 9.70 -15.06 -0.15 -6.93 16 17 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 18 C 0.00 0.00 5.11 -17.43 -0.09 -0.09 16 19 N -0.91 -26.40 11.02 55.49 0.61 -25.79 16 20 Si 0.91 21.78 29.57 -169.99 -5.03 16.76 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 C 0.14 3.04 6.59 -3.44 -0.02 3.02 16 25 C -0.09 -1.62 5.95 -28.09 -0.17 -1.79 16 26 C -0.12 -0.98 9.76 -26.73 -0.26 -1.24 16 27 C -0.13 -0.97 9.52 -26.73 -0.25 -1.22 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.34 7.85 -51.93 -0.41 -0.07 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.07 0.41 8.01 -51.93 -0.42 0.00 16 33 H 0.08 0.69 5.05 -51.93 -0.26 0.42 16 34 H 0.40 4.16 7.86 -40.82 -0.32 3.84 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.83 7.78 -51.93 -0.40 0.42 16 38 H 0.07 0.84 8.11 -51.93 -0.42 0.42 16 39 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 40 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 45 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 46 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 47 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.11 0.88 8.02 -51.93 -0.42 0.47 16 49 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 50 H 0.12 0.94 7.68 -51.93 -0.40 0.54 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -33.06 405.50 -9.10 -42.16 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.40 Total: 2.32 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.11 Total: 2.91 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.86 Total: -55.73 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.18 Total: -14.54 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.06 -9.10 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161683348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.073 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds