Wall clock time and date at job start Tue Mar 31 2020 18:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46493 * 119.99852 * 2 1 4 4 C 1.34773 * 119.99762 * 179.97438 * 2 1 3 5 5 O 1.21275 * 120.00265 * 5.29622 * 4 2 1 6 6 C 1.50704 * 119.99761 * 185.29584 * 4 2 1 7 7 C 1.50693 * 115.55311 * 66.82650 * 6 4 2 8 8 O 1.21281 * 120.00496 * 219.94263 * 7 6 4 9 9 N 1.34778 * 119.99872 * 39.66672 * 7 6 4 10 10 C 1.46495 * 120.00403 * 175.32633 * 9 7 6 11 11 C 1.53004 * 109.47659 * 180.02562 * 10 9 7 12 12 C 1.50691 * 109.47371 * 179.97438 * 11 10 9 13 13 C 1.29452 * 117.69733 * 94.99794 * 12 11 10 14 14 C 1.50324 * 123.65186 * 180.86058 * 13 12 11 15 15 N 1.47011 * 109.16721 * 349.01860 * 14 13 12 16 16 C 1.36938 * 121.37579 * 222.97317 * 15 14 13 17 17 H 1.08000 * 119.99815 * 152.37531 * 16 15 14 18 18 C 1.38810 * 120.00072 * 332.38005 * 16 15 14 19 19 N 1.31625 * 119.99917 * 349.93819 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 169.94164 * 18 16 15 21 21 H 1.48504 * 109.47181 * 94.98999 * 20 18 16 22 22 H 1.48497 * 109.46983 * 214.98997 * 20 18 16 23 23 H 1.48498 * 109.47007 * 334.99061 * 20 18 16 24 24 C 1.47335 * 117.24761 * 42.94703 * 15 14 13 25 25 C 1.49970 * 117.69258 * 274.73917 * 12 11 10 26 26 C 1.53002 * 117.51500 * 212.53338 * 6 4 2 27 27 C 1.52998 * 60.00033 * 107.48165 * 26 6 4 28 28 H 1.09000 * 109.47319 * 240.00430 * 1 2 3 29 29 H 1.08996 * 109.47257 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.46991 * 120.00355 * 1 2 3 31 31 H 1.09008 * 109.47118 * 274.17606 * 3 2 1 32 32 H 1.08999 * 109.47528 * 34.17644 * 3 2 1 33 33 H 1.09002 * 109.47611 * 154.17877 * 3 2 1 34 34 H 0.97005 * 120.00156 * 355.32453 * 9 7 6 35 35 H 1.09003 * 109.46975 * 299.99595 * 10 9 7 36 36 H 1.08995 * 109.47199 * 59.99555 * 10 9 7 37 37 H 1.09003 * 109.46510 * 299.99774 * 11 10 9 38 38 H 1.08996 * 109.46750 * 59.99399 * 11 10 9 39 39 H 1.08002 * 118.17339 * 0.88131 * 13 12 11 40 40 H 1.08998 * 109.52704 * 108.93017 * 14 13 12 41 41 H 1.09002 * 109.51874 * 229.11517 * 14 13 12 42 42 H 0.96995 * 120.00109 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.77584 * 57.81420 * 24 15 14 44 44 H 1.08998 * 109.78021 * 178.61517 * 24 15 14 45 45 H 1.09008 * 109.31197 * 281.29025 * 25 12 11 46 46 H 1.08995 * 109.31645 * 40.71196 * 25 12 11 47 47 H 1.09006 * 117.49143 * 214.96998 * 26 6 4 48 48 H 1.08995 * 117.50386 * 359.97438 * 26 6 4 49 49 H 1.09009 * 117.49486 * 252.50721 * 27 26 6 50 50 H 1.08994 * 117.52312 * 107.48356 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5364 -2.2153 -0.0960 6 6 3.6411 -1.1699 0.1210 7 6 4.1881 -0.6938 1.4419 8 8 5.1782 0.0060 1.4715 9 7 3.5738 -1.0410 2.5902 10 6 4.1617 -0.6649 3.8783 11 6 3.2732 -1.1774 5.0136 12 6 3.8783 -0.7911 6.3385 13 6 3.4572 0.2978 6.8977 14 6 3.9807 0.8180 8.2073 15 7 4.8122 -0.2163 8.8399 16 6 4.7198 -0.4846 10.1795 17 1 4.9597 -1.4700 10.5506 18 6 4.3179 0.5100 11.0605 19 7 4.2169 1.7551 10.6457 20 14 3.9205 0.0815 12.8347 21 1 5.1199 0.3103 13.6798 22 1 2.8067 0.9391 13.3135 23 1 3.5189 -1.3455 12.9212 24 6 5.7485 -0.9526 7.9728 25 6 4.9217 -1.6984 6.9192 26 6 4.4061 -2.2807 -0.6015 27 6 4.4512 -0.8480 -1.1364 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 2.3143 1.6208 -1.0250 32 1 1.6429 2.0085 0.5773 33 1 3.1803 1.1209 0.4476 34 1 2.7423 -1.5398 2.5638 35 1 5.1545 -1.1060 3.9671 36 1 4.2396 0.4205 3.9390 37 1 2.2802 -0.7367 4.9250 38 1 3.1958 -2.2629 4.9526 39 1 2.6866 0.8639 6.3955 40 1 4.5810 1.7106 8.0310 41 1 3.1445 1.0639 8.8619 42 1 3.9364 2.4502 11.2613 43 1 6.4284 -0.2532 7.4863 44 1 6.3172 -1.6676 8.5673 45 1 4.4356 -2.5586 7.3797 46 1 5.5819 -2.0441 6.1239 47 1 5.3051 -2.6671 -0.1211 48 1 3.8230 -3.0100 -1.1637 49 1 3.8976 -0.6346 -2.0509 50 1 5.3795 -0.2915 -1.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161683348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:04 Heat of formation + Delta-G solvation = -24.237397 kcal Electronic energy + Delta-G solvation = -29166.917543 eV Core-core repulsion = 25195.245891 eV Total energy + Delta-G solvation = -3971.671652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02371 -40.26151 -39.47848 -37.39491 -36.75021 -36.50678 -35.15798 -33.18185 -31.51478 -30.42288 -29.33313 -27.86115 -27.20803 -25.59511 -24.50713 -23.80558 -23.51822 -22.50252 -22.32901 -20.25976 -19.46606 -18.95750 -17.71759 -17.48274 -17.30927 -17.02416 -16.83133 -16.43119 -16.41256 -15.78862 -15.67793 -15.43639 -15.21513 -15.08055 -14.82426 -14.33203 -14.16443 -14.04181 -13.87227 -13.59631 -13.49837 -13.41228 -13.22868 -12.93313 -12.86737 -12.77604 -12.65822 -12.61125 -12.39494 -12.23695 -12.17917 -11.93978 -11.71988 -11.68044 -11.35468 -11.15646 -10.84156 -10.70724 -10.25157 -9.82260 -9.50932 -8.70091 -7.88502 -5.35199 1.20633 1.28110 1.39173 1.46228 1.46704 1.56974 1.80934 1.96349 2.49876 2.70391 3.25441 3.29246 3.49003 3.60325 3.67520 3.74469 3.92392 4.04252 4.06657 4.15183 4.26443 4.34542 4.42879 4.52709 4.54708 4.56520 4.62438 4.65744 4.67444 4.80674 4.83367 4.84612 4.88028 4.88340 4.94902 5.02828 5.08366 5.16118 5.23289 5.27112 5.34872 5.40797 5.51115 5.60448 5.85770 6.11518 6.25693 6.30912 6.35383 6.89487 6.99038 7.13730 7.82289 8.38474 9.19884 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.002166 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.297360 B =12925.047004 C =13389.668060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.610 5.610 3 C 0.071 3.929 4 C 0.551 3.449 5 O -0.560 6.560 6 C -0.213 4.213 7 C 0.560 3.440 8 O -0.560 6.560 9 N -0.714 5.714 10 C 0.134 3.866 11 C -0.080 4.080 12 C -0.120 4.120 13 C -0.171 4.171 14 C 0.209 3.791 15 N -0.616 5.616 16 C -0.259 4.259 17 H 0.069 0.931 18 C -0.055 4.055 19 N -0.941 5.941 20 Si 0.972 3.028 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.136 3.864 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.004 0.996 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 -4.489 -27.262 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.342 5.342 3 C -0.071 4.071 4 C 0.338 3.662 5 O -0.438 6.438 6 C -0.220 4.220 7 C 0.346 3.654 8 O -0.439 6.439 9 N -0.365 5.365 10 C 0.011 3.989 11 C -0.118 4.118 12 C -0.121 4.121 13 C -0.191 4.191 14 C 0.084 3.916 15 N -0.340 5.340 16 C -0.389 4.389 17 H 0.087 0.913 18 C -0.249 4.249 19 N -0.588 5.588 20 Si 0.800 3.200 21 H -0.212 1.212 22 H -0.218 1.218 23 H -0.193 1.193 24 C 0.011 3.989 25 C -0.126 4.126 26 C -0.154 4.154 27 C -0.150 4.150 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.243 0.757 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.131 0.869 48 H 0.137 0.863 49 H 0.143 0.857 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.379 -4.398 -27.152 28.027 hybrid contribution -0.549 0.185 1.454 1.565 sum -5.928 -4.213 -25.698 26.707 Atomic orbital electron populations 1.21833 0.77350 1.04395 1.02206 1.47813 1.08070 1.06318 1.71978 1.22090 0.96996 0.84314 1.03746 1.19330 0.87268 0.83476 0.76174 1.90711 1.70023 1.32351 1.50736 1.21444 0.92346 1.13431 0.94764 1.19195 0.82962 0.78998 0.84278 1.90736 1.27468 1.38201 1.87448 1.45962 1.27501 1.57513 1.05515 1.21261 0.97040 0.99899 0.80718 1.20796 0.98362 1.02363 0.90233 1.20516 0.99217 0.96390 0.95976 1.22846 1.00419 0.97969 0.97840 1.19331 0.93311 0.89175 0.89797 1.44390 1.42393 1.42596 1.04645 1.19520 1.41140 0.94800 0.83434 0.91335 1.25904 1.02264 0.94828 1.01934 1.70160 1.52763 1.00186 1.35693 0.85182 0.77202 0.77661 0.79953 1.21215 1.21822 1.19342 1.21182 0.91404 0.94229 0.92095 1.20753 0.96557 0.97242 0.98050 1.23157 1.00410 0.92139 0.99713 1.23211 1.00769 0.98226 0.92754 0.92459 0.87619 0.92021 0.90015 0.89212 0.92073 0.75719 0.91609 0.92312 0.90218 0.89425 0.86946 0.97804 0.92795 0.94101 0.96237 0.92300 0.91494 0.89608 0.86871 0.86331 0.85735 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.17 127.77 1.30 2.25 16 2 N -0.61 -8.92 3.27 -871.89 -2.85 -11.77 16 3 C 0.07 0.80 10.14 127.77 1.29 2.09 16 4 C 0.55 10.54 6.21 87.66 0.54 11.09 16 5 O -0.56 -14.07 16.74 -3.02 -0.05 -14.12 16 6 C -0.21 -3.79 1.29 -53.67 -0.07 -3.86 16 7 C 0.56 12.52 5.62 87.65 0.49 13.01 16 8 O -0.56 -15.99 16.09 -3.03 -0.05 -16.04 16 9 N -0.71 -14.89 5.49 -463.07 -2.54 -17.43 16 10 C 0.13 3.17 5.66 86.38 0.49 3.66 16 11 C -0.08 -1.88 5.32 29.85 0.16 -1.72 16 12 C -0.12 -3.92 5.11 -15.14 -0.08 -4.00 16 13 C -0.17 -6.58 9.47 27.11 0.26 -6.32 16 14 C 0.21 10.48 5.17 85.42 0.44 10.93 16 15 N -0.62 -31.97 3.00 -703.02 -2.11 -34.08 16 16 C -0.26 -14.55 9.70 84.03 0.81 -13.74 16 17 H 0.07 3.73 7.85 -2.91 -0.02 3.70 16 18 C -0.05 -3.10 5.11 84.86 0.43 -2.67 16 19 N -0.94 -56.59 11.02 21.65 0.24 -56.36 16 20 Si 0.97 45.45 29.57 68.60 2.03 47.48 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.75 6.59 86.32 0.57 6.32 16 25 C -0.09 -2.92 5.95 29.72 0.18 -2.74 16 26 C -0.12 -1.70 9.76 30.59 0.30 -1.40 16 27 C -0.11 -1.47 9.52 30.59 0.29 -1.18 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.60 7.85 -2.39 -0.02 0.58 16 30 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.09 0.75 8.01 -2.39 -0.02 0.74 16 33 H 0.06 0.96 5.05 -2.39 -0.01 0.94 16 34 H 0.41 7.53 7.86 -92.70 -0.73 6.80 16 35 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.08 1.73 7.78 -2.39 -0.02 1.71 16 38 H 0.09 1.80 8.11 -2.39 -0.02 1.79 16 39 H 0.11 3.76 7.73 -2.91 -0.02 3.73 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.05 3.03 6.51 -2.39 -0.02 3.02 16 42 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 43 H 0.02 0.83 8.14 -2.38 -0.02 0.82 16 44 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 45 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.09 2.34 8.10 -2.39 -0.02 2.32 16 47 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 48 H 0.12 1.64 8.02 -2.39 -0.02 1.62 16 49 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.12 1.65 7.68 -2.39 -0.02 1.63 16 Total: -1.00 -73.64 405.50 2.28 -71.35 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.20 Total: 19.25 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 7.41 Total: 11.71 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -7.26 Total: -119.64 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.10 Total: -30.16 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.64 2.28 -71.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161683348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.117 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds