Wall clock time and date at job start Tue Mar 31 2020 18:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99888 * 2 1 4 4 C 1.52996 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46041 * 60.03280 * 4 3 2 6 6 N 1.46503 * 109.46799 * 299.96973 * 5 4 3 7 7 C 1.34779 * 119.99534 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00446 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99748 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47191 * 180.02562 * 9 7 6 11 11 C 1.34855 * 125.89012 * 274.69027 * 10 9 7 12 12 C 1.40897 * 107.41802 * 179.88410 * 11 10 9 13 13 C 1.34857 * 107.41557 * 0.38076 * 12 11 10 14 14 N 1.36342 * 108.21811 * 359.76663 * 13 12 11 15 15 H 0.96994 * 125.63568 * 180.02562 * 14 13 12 16 16 C 1.53042 * 109.46071 * 180.02562 * 4 3 2 17 17 C 1.53196 * 109.31301 * 58.64167 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.09007 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47177 * 299.99760 * 1 2 3 31 31 H 1.09002 * 109.46983 * 59.99847 * 1 2 3 32 32 H 1.09001 * 109.46437 * 60.00623 * 3 2 1 33 33 H 1.08997 * 109.47100 * 300.00300 * 3 2 1 34 34 H 1.08994 * 109.47109 * 59.96906 * 5 4 3 35 35 H 1.09000 * 109.47488 * 179.97438 * 5 4 3 36 36 H 0.96996 * 120.00367 * 359.97438 * 6 5 4 37 37 H 1.08994 * 109.47195 * 300.00380 * 9 7 6 38 38 H 1.09005 * 109.46901 * 60.00580 * 9 7 6 39 39 H 1.07996 * 126.29326 * 0.02996 * 11 10 9 40 40 H 1.07998 * 126.28980 * 180.12825 * 12 11 10 41 41 H 1.07998 * 125.88748 * 179.73464 * 13 12 11 42 42 H 1.09005 * 109.49382 * 298.69280 * 16 4 3 43 43 H 1.08991 * 109.52573 * 178.61373 * 16 4 3 44 44 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 45 45 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 46 46 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 48 48 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 49 49 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 50 50 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9872 0.4259 -1.2488 6 7 3.3917 -0.9127 -1.2490 7 6 3.6507 -1.7651 -2.2604 8 8 4.3770 -1.4243 -3.1699 9 6 3.0386 -3.1422 -2.2604 10 6 3.4835 -3.8896 -3.4910 11 6 2.9028 -3.8277 -4.7066 12 6 3.6315 -4.6739 -5.5657 13 6 4.6246 -5.2272 -4.8403 14 7 4.5389 -4.7496 -3.5662 15 1 5.1310 -4.9827 -2.8342 16 6 4.1576 2.5829 0.0013 17 6 3.6757 3.3514 1.2358 18 7 3.9761 2.5567 2.4345 19 6 4.6850 3.1003 3.4723 20 1 5.3905 3.8964 3.2860 21 6 4.4926 2.6320 4.7649 22 7 3.4235 1.9211 5.0549 23 14 5.7507 3.0108 6.0926 24 1 5.8684 4.4819 6.2578 25 1 5.3159 2.4013 7.3750 26 1 7.0685 2.4497 5.7002 27 6 3.5068 1.1658 2.4959 28 6 3.9858 0.4236 1.2496 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.6654 0.9669 -2.1386 35 1 5.0738 0.3401 -1.2488 36 1 2.8111 -1.1854 -0.5215 37 1 3.3611 -3.6832 -1.3708 38 1 1.9519 -3.0569 -2.2597 39 1 2.0394 -3.2363 -4.9732 40 1 3.4292 -4.8504 -6.6118 41 1 5.3606 -5.9281 -5.2056 42 1 3.8552 3.1161 -0.9001 43 1 5.2439 2.4982 0.0266 44 1 2.6005 3.5164 1.1668 45 1 4.1895 4.3108 1.2952 46 1 3.2891 1.5935 5.9580 47 1 3.9113 0.6825 3.3853 48 1 2.4175 1.1489 2.5318 49 1 3.5612 -0.5803 1.2368 50 1 5.0737 0.3582 1.2632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162608246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:45 Heat of formation + Delta-G solvation = -13.097695 kcal Electronic energy + Delta-G solvation = -30163.601038 eV Core-core repulsion = 26192.412440 eV Total energy + Delta-G solvation = -3971.188598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19165 -39.90603 -38.61002 -36.76685 -34.78883 -33.07233 -31.96338 -30.94505 -30.73556 -30.00870 -27.47172 -27.33843 -25.99802 -24.96036 -23.88018 -22.34757 -21.03525 -20.67233 -20.42287 -20.00648 -18.39764 -17.65596 -17.11527 -16.59628 -16.00967 -15.78751 -15.48473 -15.16931 -14.84869 -14.60548 -14.17649 -13.85264 -13.77193 -13.53593 -13.50710 -13.30511 -13.25754 -13.15997 -12.63796 -12.44757 -12.33464 -12.27747 -11.93067 -11.63676 -11.58554 -11.35451 -11.29113 -10.96295 -10.74267 -10.54011 -10.27980 -10.18436 -9.96997 -9.75836 -9.54942 -9.45400 -9.36485 -8.86375 -8.71730 -8.46953 -8.06108 -6.69430 -5.82006 -3.24127 2.17388 2.82196 2.96222 3.24268 3.36052 3.41922 3.43408 3.50830 3.98226 4.47024 4.66090 4.97382 5.01505 5.06498 5.13191 5.17351 5.30792 5.33718 5.37293 5.41342 5.48257 5.50142 5.51158 5.64125 5.68622 5.72237 5.75948 5.88012 5.93782 6.05156 6.12901 6.19000 6.25841 6.28283 6.39805 6.58509 6.63080 6.67513 6.76745 6.81587 6.88545 6.95763 7.09310 7.27201 7.35894 7.52749 7.64628 7.76919 7.88363 8.42022 8.49895 9.18570 9.81755 10.37887 11.26337 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002623 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.035722 B =10671.231980 C =11104.020332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.394 6.394 3 C 0.071 3.929 4 C -0.058 4.058 5 C 0.134 3.866 6 N -0.710 5.710 7 C 0.505 3.495 8 O -0.543 6.543 9 C -0.073 4.073 10 C 0.039 3.961 11 C -0.184 4.184 12 C -0.201 4.201 13 C -0.016 4.016 14 N -0.553 5.553 15 H 0.411 0.589 16 C -0.121 4.121 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.161 0.839 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.018 0.982 45 H 0.056 0.944 46 H 0.254 0.746 47 H 0.086 0.914 48 H 0.020 0.980 49 H 0.054 0.946 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -11.125 -14.594 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.313 6.313 3 C -0.005 4.005 4 C -0.058 4.058 5 C 0.010 3.990 6 N -0.367 5.367 7 C 0.290 3.710 8 O -0.421 6.421 9 C -0.113 4.113 10 C -0.074 4.074 11 C -0.208 4.208 12 C -0.226 4.226 13 C -0.147 4.147 14 N -0.148 5.148 15 H 0.247 0.753 16 C -0.160 4.160 17 C 0.018 3.982 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.047 3.953 28 C -0.164 4.164 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.038 0.962 49 H 0.073 0.927 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.543 -11.126 -14.917 18.943 hybrid contribution 0.392 0.207 1.330 1.402 sum -3.152 -10.919 -13.587 17.713 Atomic orbital electron populations 1.22677 0.81307 1.02231 0.99963 1.87462 1.19399 1.29034 1.95403 1.22757 0.93101 0.83970 1.00651 1.20779 0.93015 0.96802 0.95225 1.21382 0.97666 0.82444 0.97464 1.46307 1.50448 1.14565 1.25404 1.20470 0.81639 0.86615 0.82270 1.90709 1.37654 1.77775 1.35967 1.20120 1.02747 0.92841 0.95639 1.19558 0.92778 0.98433 0.96679 1.20601 1.03359 1.04531 0.92359 1.20845 0.98994 1.03245 0.99537 1.21745 1.03477 1.05207 0.84288 1.41886 1.25557 1.36408 1.10932 0.75309 1.21996 1.00881 0.93754 0.99419 1.20924 0.96736 0.93985 0.86602 1.44037 1.64096 1.07825 1.15455 1.19137 1.14974 1.18490 0.85628 0.91766 1.25023 0.96701 1.00824 0.97023 1.70019 1.25131 1.40135 1.19418 0.86384 0.81352 0.78008 0.81104 1.20904 1.21668 1.21064 1.20693 0.95981 0.84106 0.94556 1.22107 1.00452 0.98088 0.95770 0.90043 0.93820 0.94577 0.91215 0.94073 0.92324 0.91908 0.74614 0.88599 0.86915 0.85124 0.84981 0.82161 0.92670 0.91275 0.96458 0.92579 0.93625 0.89598 0.96211 0.92747 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -5.23 6.77 -35.23 -0.24 -5.47 16 3 C 0.07 1.04 4.05 37.16 0.15 1.19 16 4 C -0.06 -0.89 0.51 -154.47 -0.08 -0.97 16 5 C 0.13 1.99 4.56 -4.04 -0.02 1.97 16 6 N -0.71 -9.60 4.60 -60.29 -0.28 -9.87 16 7 C 0.51 7.07 7.82 -10.98 -0.09 6.98 16 8 O -0.54 -9.81 16.03 5.56 0.09 -9.72 16 9 C -0.07 -0.75 6.24 -29.04 -0.18 -0.93 16 10 C 0.04 0.46 5.66 -81.79 -0.46 -0.01 16 11 C -0.18 -2.30 10.77 -39.78 -0.43 -2.73 16 12 C -0.20 -2.30 10.86 -39.78 -0.43 -2.73 16 13 C -0.02 -0.16 11.94 -16.75 -0.20 -0.36 16 14 N -0.55 -5.70 6.07 -9.12 -0.06 -5.75 16 15 H 0.41 3.18 8.96 -40.82 -0.37 2.82 16 16 C -0.12 -1.95 4.91 -26.61 -0.13 -2.08 16 17 C 0.14 2.81 6.05 -3.71 -0.02 2.79 16 18 N -0.59 -14.01 3.00 -172.59 -0.52 -14.53 16 19 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 20 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.43 11.18 55.49 0.62 -24.81 16 23 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.17 3.86 4.81 -3.93 -0.02 3.84 16 28 C -0.12 -2.24 4.57 -26.83 -0.12 -2.36 16 29 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 1.19 4.99 -51.93 -0.26 0.93 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.41 5.26 4.69 -40.82 -0.19 5.07 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.02 0.34 6.69 -51.93 -0.35 -0.01 16 45 H 0.06 1.09 7.93 -51.93 -0.41 0.67 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.09 2.22 6.05 -51.93 -0.31 1.90 16 48 H 0.02 0.47 6.70 -51.93 -0.35 0.12 16 49 H 0.05 0.90 6.49 -51.93 -0.34 0.57 16 50 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -32.48 389.26 -8.73 -41.22 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -8.04 Total: 7.56 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.15 Total: -0.77 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.23 Total: -54.97 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.15 Total: -15.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.48 -8.73 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162608246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.121 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds