Wall clock time and date at job start Tue Mar 31 2020 18:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99888 * 2 1 4 4 C 1.52996 * 109.47016 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46041 * 60.03280 * 4 3 2 6 6 N 1.46503 * 109.46799 * 299.96973 * 5 4 3 7 7 C 1.34779 * 119.99534 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00446 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99748 * 179.97438 * 7 6 5 10 10 C 1.50696 * 109.47191 * 180.02562 * 9 7 6 11 11 C 1.34855 * 125.89012 * 274.69027 * 10 9 7 12 12 C 1.40897 * 107.41802 * 179.88410 * 11 10 9 13 13 C 1.34857 * 107.41557 * 0.38076 * 12 11 10 14 14 N 1.36342 * 108.21811 * 359.76663 * 13 12 11 15 15 H 0.96994 * 125.63568 * 180.02562 * 14 13 12 16 16 C 1.53042 * 109.46071 * 180.02562 * 4 3 2 17 17 C 1.53196 * 109.31301 * 58.64167 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.09007 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47177 * 299.99760 * 1 2 3 31 31 H 1.09002 * 109.46983 * 59.99847 * 1 2 3 32 32 H 1.09001 * 109.46437 * 60.00623 * 3 2 1 33 33 H 1.08997 * 109.47100 * 300.00300 * 3 2 1 34 34 H 1.08994 * 109.47109 * 59.96906 * 5 4 3 35 35 H 1.09000 * 109.47488 * 179.97438 * 5 4 3 36 36 H 0.96996 * 120.00367 * 359.97438 * 6 5 4 37 37 H 1.08994 * 109.47195 * 300.00380 * 9 7 6 38 38 H 1.09005 * 109.46901 * 60.00580 * 9 7 6 39 39 H 1.07996 * 126.29326 * 0.02996 * 11 10 9 40 40 H 1.07998 * 126.28980 * 180.12825 * 12 11 10 41 41 H 1.07998 * 125.88748 * 179.73464 * 13 12 11 42 42 H 1.09005 * 109.49382 * 298.69280 * 16 4 3 43 43 H 1.08991 * 109.52573 * 178.61373 * 16 4 3 44 44 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 45 45 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 46 46 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 48 48 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 49 49 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 50 50 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9872 0.4259 -1.2488 6 7 3.3917 -0.9127 -1.2490 7 6 3.6507 -1.7651 -2.2604 8 8 4.3770 -1.4243 -3.1699 9 6 3.0386 -3.1422 -2.2604 10 6 3.4835 -3.8896 -3.4910 11 6 2.9028 -3.8277 -4.7066 12 6 3.6315 -4.6739 -5.5657 13 6 4.6246 -5.2272 -4.8403 14 7 4.5389 -4.7496 -3.5662 15 1 5.1310 -4.9827 -2.8342 16 6 4.1576 2.5829 0.0013 17 6 3.6757 3.3514 1.2358 18 7 3.9761 2.5567 2.4345 19 6 4.6850 3.1003 3.4723 20 1 5.3905 3.8964 3.2860 21 6 4.4926 2.6320 4.7649 22 7 3.4235 1.9211 5.0549 23 14 5.7507 3.0108 6.0926 24 1 5.8684 4.4819 6.2578 25 1 5.3159 2.4013 7.3750 26 1 7.0685 2.4497 5.7002 27 6 3.5068 1.1658 2.4959 28 6 3.9858 0.4236 1.2496 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.6654 0.9669 -2.1386 35 1 5.0738 0.3401 -1.2488 36 1 2.8111 -1.1854 -0.5215 37 1 3.3611 -3.6832 -1.3708 38 1 1.9519 -3.0569 -2.2597 39 1 2.0394 -3.2363 -4.9732 40 1 3.4292 -4.8504 -6.6118 41 1 5.3606 -5.9281 -5.2056 42 1 3.8552 3.1161 -0.9001 43 1 5.2439 2.4982 0.0266 44 1 2.6005 3.5164 1.1668 45 1 4.1895 4.3108 1.2952 46 1 3.2891 1.5935 5.9580 47 1 3.9113 0.6825 3.3853 48 1 2.4175 1.1489 2.5318 49 1 3.5612 -0.5803 1.2368 50 1 5.0737 0.3582 1.2632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162608246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:44 Heat of formation + Delta-G solvation = -33.769437 kcal Electronic energy + Delta-G solvation = -30164.497432 eV Core-core repulsion = 26192.412440 eV Total energy + Delta-G solvation = -3972.084992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01358 -41.14096 -39.82076 -38.02000 -36.23146 -34.58472 -33.04424 -32.27782 -31.75186 -31.63057 -28.85065 -28.32524 -27.16987 -26.04165 -25.52423 -23.89358 -22.56987 -21.63885 -21.35577 -20.92487 -19.86148 -18.75540 -18.33491 -17.98149 -17.13328 -16.90835 -16.77515 -16.58777 -16.20220 -15.84429 -15.47027 -15.23734 -15.06450 -14.77844 -14.68607 -14.41526 -14.37633 -14.15748 -14.01533 -13.70350 -13.53275 -13.25753 -13.09709 -13.06650 -12.94265 -12.56851 -12.55493 -12.47109 -12.36571 -12.19808 -11.97325 -11.80543 -11.43342 -11.24773 -11.09009 -10.82108 -10.53826 -10.41852 -9.87617 -9.68414 -8.88196 -8.62996 -7.85537 -5.29475 1.34336 1.46723 1.48948 1.55150 1.76413 2.09777 2.40064 2.52092 2.59523 2.94057 3.29163 3.70577 3.76939 3.81718 3.87870 4.01216 4.21406 4.26881 4.32713 4.47233 4.48865 4.52362 4.55427 4.59843 4.65882 4.67942 4.70144 4.71175 4.80574 4.81557 4.90176 4.93751 4.94689 5.06973 5.18446 5.24591 5.28233 5.38817 5.39040 5.45747 5.52621 5.65259 5.68777 5.82663 6.13443 6.25191 6.27466 6.41556 6.78069 6.86321 7.18128 7.43366 7.90091 8.40341 9.20125 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.002623 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.035722 B =10671.231980 C =11104.020332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.080 3.920 4 C -0.049 4.049 5 C 0.144 3.856 6 N -0.704 5.704 7 C 0.506 3.494 8 O -0.587 6.587 9 C -0.065 4.065 10 C 0.022 3.978 11 C -0.210 4.210 12 C -0.228 4.228 13 C -0.013 4.013 14 N -0.551 5.551 15 H 0.422 0.578 16 C -0.112 4.112 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.281 1.281 27 C 0.184 3.816 28 C -0.110 4.110 29 H 0.106 0.894 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.417 0.583 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.192 0.808 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.047 0.953 48 H 0.004 0.996 49 H 0.069 0.931 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.182 -12.039 -15.856 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C 0.003 3.997 4 C -0.049 4.049 5 C 0.019 3.981 6 N -0.361 5.361 7 C 0.293 3.707 8 O -0.467 6.467 9 C -0.105 4.105 10 C -0.091 4.091 11 C -0.235 4.235 12 C -0.252 4.252 13 C -0.144 4.144 14 N -0.147 5.147 15 H 0.260 0.740 16 C -0.151 4.151 17 C 0.015 3.985 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.082 0.918 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.208 1.208 27 C 0.058 3.942 28 C -0.149 4.149 29 H 0.124 0.876 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.260 0.740 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.209 0.791 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.022 0.978 49 H 0.087 0.913 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.539 -12.038 -16.181 20.476 hybrid contribution 0.341 0.503 1.675 1.782 sum -3.198 -11.535 -14.506 18.807 Atomic orbital electron populations 1.22874 0.79688 1.03979 1.00064 1.87429 1.21051 1.28014 1.95425 1.22545 0.92255 0.84687 1.00169 1.20645 0.93848 0.96175 0.94279 1.21173 0.97061 0.83121 0.96732 1.46262 1.50194 1.14070 1.25544 1.21054 0.80760 0.87645 0.81265 1.90692 1.39686 1.78805 1.37551 1.20158 1.03774 0.90449 0.96168 1.19783 0.93298 0.98991 0.97026 1.20863 1.04038 1.05302 0.93276 1.21157 0.99758 1.03877 1.00410 1.22283 1.03343 1.04810 0.83974 1.41985 1.25302 1.35935 1.11488 0.73993 1.21877 1.00438 0.93986 0.98842 1.21068 0.97010 0.94006 0.86373 1.44286 1.64122 1.08783 1.16109 1.19451 1.14960 1.18151 0.86600 0.91834 1.25712 0.98319 1.01417 0.98970 1.70164 1.26691 1.41534 1.19381 0.85431 0.79180 0.77919 0.78447 1.20231 1.22081 1.20757 1.20435 0.94684 0.83988 0.95062 1.21871 0.99526 0.98573 0.94906 0.87551 0.94911 0.93256 0.93916 0.92247 0.91916 0.92988 0.73986 0.86050 0.84708 0.85191 0.83903 0.79111 0.89482 0.91923 0.96089 0.92778 0.94210 0.93469 0.97838 0.91278 0.93835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -9.78 6.77 -148.98 -1.01 -10.79 16 3 C 0.08 2.21 4.05 71.98 0.29 2.50 16 4 C -0.05 -1.44 0.51 -52.16 -0.03 -1.47 16 5 C 0.14 3.98 4.56 86.38 0.39 4.37 16 6 N -0.70 -17.50 4.60 -463.06 -2.13 -19.63 16 7 C 0.51 13.17 7.82 87.66 0.69 13.86 16 8 O -0.59 -20.50 16.03 -3.03 -0.05 -20.55 16 9 C -0.07 -1.18 6.24 29.10 0.18 -1.00 16 10 C 0.02 0.49 5.66 41.08 0.23 0.73 16 11 C -0.21 -5.05 10.77 22.14 0.24 -4.82 16 12 C -0.23 -4.93 10.86 22.14 0.24 -4.69 16 13 C -0.01 -0.23 11.94 83.22 0.99 0.76 16 14 N -0.55 -10.26 6.07 -182.76 -1.11 -11.37 16 15 H 0.42 5.61 8.96 -92.71 -0.83 4.78 16 16 C -0.11 -3.44 4.91 30.67 0.15 -3.29 16 17 C 0.14 5.43 6.05 86.37 0.52 5.95 16 18 N -0.61 -29.31 3.00 -699.95 -2.10 -31.41 16 19 C -0.26 -14.08 9.58 84.03 0.81 -13.27 16 20 H 0.06 3.36 7.88 -2.91 -0.02 3.33 16 21 C -0.05 -2.67 4.92 84.86 0.42 -2.26 16 22 N -0.93 -53.96 11.18 21.65 0.24 -53.72 16 23 Si 0.96 44.43 29.59 68.60 2.03 46.46 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C 0.18 8.42 4.81 86.22 0.41 8.84 16 28 C -0.11 -3.89 4.57 30.53 0.14 -3.75 16 29 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 30 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 1.43 4.99 -2.39 -0.01 1.42 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.42 9.60 4.69 -92.71 -0.43 9.17 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 40 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 41 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.02 0.81 6.69 -2.39 -0.02 0.79 16 45 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 46 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 47 H 0.05 2.52 6.05 -2.39 -0.01 2.51 16 48 H 0.00 0.18 6.70 -2.39 -0.02 0.16 16 49 H 0.07 2.23 6.49 -2.38 -0.02 2.21 16 50 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.84 389.26 2.49 -69.36 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.32 Total: 27.37 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.93 Total: 4.28 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.10 Total: -116.13 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.06 Total: -31.34 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.84 2.49 -69.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162608246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.588 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds