Wall clock time and date at job start Tue Mar 31 2020 19:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00134 * 2 1 4 4 O 1.42906 * 109.46773 * 82.19087 * 3 2 1 5 5 C 1.42905 * 113.99604 * 286.61680 * 4 3 2 6 6 C 1.50696 * 109.47221 * 202.18534 * 3 2 1 7 7 C 1.38350 * 120.44992 * 120.67070 * 6 3 2 8 8 C 1.50698 * 120.74460 * 359.97438 * 7 6 3 9 9 N 1.46896 * 109.47148 * 286.59000 * 8 7 6 10 10 C 1.38838 * 118.50241 * 180.26692 * 7 6 3 11 11 C 1.38062 * 119.33292 * 359.74770 * 10 7 6 12 12 N 1.31942 * 120.85124 * 0.02603 * 11 10 7 13 13 C 1.32424 * 121.62547 * 359.97438 * 12 11 10 14 14 N 1.39007 * 119.70317 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00295 * 355.80694 * 14 13 12 16 16 H 1.08996 * 109.35629 * 324.82764 * 15 14 13 17 17 C 1.52958 * 109.42462 * 84.64220 * 15 14 13 18 18 C 1.53232 * 109.42030 * 183.69197 * 17 15 14 19 19 C 1.51268 * 108.53314 * 305.38236 * 18 17 15 20 20 C 1.37883 * 120.84690 * 231.32075 * 19 18 17 21 21 N 1.31513 * 120.00344 * 180.02562 * 20 19 18 22 22 Si 1.86800 * 119.99731 * 0.02663 * 20 19 18 23 23 H 1.48493 * 109.47593 * 89.99994 * 22 20 19 24 24 H 1.48506 * 109.47067 * 209.99955 * 22 20 19 25 25 H 1.48500 * 109.47355 * 329.99457 * 22 20 19 26 26 C 1.51267 * 118.30443 * 51.34166 * 19 18 17 27 27 C 1.52962 * 109.41875 * 205.00168 * 15 14 13 28 28 H 1.09001 * 109.47583 * 184.41815 * 1 2 3 29 29 H 1.09007 * 109.46872 * 304.40980 * 1 2 3 30 30 H 1.09000 * 109.47447 * 64.41211 * 1 2 3 31 31 H 1.08993 * 109.46958 * 322.19099 * 3 2 1 32 32 H 1.09002 * 109.46511 * 195.36964 * 5 4 3 33 33 H 1.09002 * 109.46993 * 315.36535 * 5 4 3 34 34 H 1.08996 * 109.47369 * 75.36756 * 5 4 3 35 35 H 1.09001 * 109.47109 * 46.58682 * 8 7 6 36 36 H 1.09000 * 109.46941 * 166.58588 * 8 7 6 37 37 H 1.00902 * 110.99860 * 184.15658 * 9 8 7 38 38 H 1.00898 * 111.00044 * 308.10528 * 9 8 7 39 39 H 1.08004 * 120.33090 * 179.77467 * 10 7 6 40 40 H 1.07999 * 119.57636 * 179.97438 * 11 10 7 41 41 H 0.97007 * 119.99957 * 175.81317 * 14 13 12 42 42 H 1.09000 * 109.47190 * 63.70978 * 17 15 14 43 43 H 1.09001 * 109.49276 * 303.68750 * 17 15 14 44 44 H 1.08997 * 109.62788 * 185.66526 * 18 17 15 45 45 H 1.09000 * 109.78045 * 65.18264 * 18 17 15 46 46 H 0.96994 * 120.00534 * 180.02562 * 21 20 19 47 47 H 1.09004 * 109.62135 * 188.93617 * 26 19 18 48 48 H 1.09003 * 109.78207 * 68.46378 * 26 19 18 49 49 H 1.09003 * 109.47899 * 56.31469 * 27 15 14 50 50 H 1.09006 * 109.47950 * 296.29514 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.0367 1.8150 1.3349 5 6 0.7566 2.2116 1.8310 6 6 3.4164 1.2292 -0.5365 7 6 3.7785 1.9517 -1.6594 8 6 2.7774 2.8271 -2.3682 9 7 1.8265 1.9851 -3.1062 10 6 5.0833 1.8471 -2.1221 11 6 5.9761 1.0359 -1.4507 12 7 5.6040 0.3617 -0.3793 13 6 4.3690 0.4349 0.0930 14 7 4.0200 -0.2931 1.2246 15 6 4.9886 -1.2068 1.8353 16 1 5.5942 -1.6663 1.0542 17 6 5.8954 -0.4249 2.7872 18 6 6.9663 -1.3620 3.3555 19 6 6.2781 -2.5519 3.9869 20 6 6.5791 -2.9413 5.2749 21 7 5.9710 -3.9787 5.8073 22 14 7.8507 -1.9952 6.2635 23 1 7.1813 -0.9033 7.0151 24 1 8.5200 -2.9150 7.2182 25 1 8.8618 -1.4153 5.3435 26 6 5.2516 -3.3039 3.1690 27 6 4.2430 -2.2964 2.6076 28 1 -0.3634 -1.0246 0.0792 29 1 -0.3633 0.5808 0.8479 30 1 -0.3634 0.4438 -0.9269 31 1 1.4163 1.9675 -0.6300 32 1 0.8869 2.8282 2.7204 33 1 0.2318 2.7838 1.0659 34 1 0.1749 1.3256 2.0851 35 1 2.2381 3.4284 -1.6362 36 1 3.2982 3.4839 -3.0650 37 1 1.1861 2.5493 -3.6445 38 1 2.3104 1.3250 -3.6962 39 1 5.3969 2.3953 -2.9983 40 1 6.9920 0.9513 -1.8075 41 1 3.1350 -0.1962 1.6098 42 1 5.2994 -0.0166 3.6034 43 1 6.3757 0.3897 2.2450 44 1 7.5514 -0.8350 4.1091 45 1 7.6224 -1.7014 2.5539 46 1 6.1824 -4.2524 6.7135 47 1 4.7351 -4.0247 3.8030 48 1 5.7440 -3.8253 2.3481 49 1 3.5520 -2.8085 1.9379 50 1 3.6858 -1.8440 3.4280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167842894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:00 Heat of formation + Delta-G solvation = -53.801336 kcal Electronic energy + Delta-G solvation = -30873.503184 eV Core-core repulsion = 26900.549544 eV Total energy + Delta-G solvation = -3972.953641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.56561 -38.79171 -37.35594 -35.93295 -35.62978 -34.06038 -32.10456 -31.62206 -29.94912 -29.38917 -28.06985 -26.76372 -26.02429 -25.63249 -24.67856 -22.26484 -21.83376 -21.24377 -20.50846 -19.24979 -17.75490 -17.33750 -17.09483 -16.56415 -16.08901 -15.92064 -15.61352 -14.84461 -14.67845 -14.43824 -14.35522 -14.25300 -14.00736 -13.77637 -13.55697 -13.26503 -13.01921 -12.93582 -12.58567 -12.32452 -12.20432 -12.16725 -11.94200 -11.54738 -11.50585 -11.35026 -10.93174 -10.74476 -10.55588 -10.06101 -10.00414 -9.93136 -9.80747 -9.75865 -9.46342 -9.32141 -9.11724 -9.03014 -8.79126 -8.49875 -8.37588 -7.16969 -6.01341 -3.90681 1.30078 1.68500 3.33956 3.42041 3.42812 3.45607 3.83074 3.85198 4.18125 4.45486 4.47090 4.54002 4.75755 4.76495 4.92149 5.00017 5.04750 5.20841 5.26907 5.27776 5.29099 5.32799 5.39234 5.52740 5.62999 5.70517 5.81629 5.92603 6.07195 6.10714 6.37096 6.43109 6.61343 6.66172 6.74706 6.82763 6.92376 6.97277 7.04989 7.06681 7.07435 7.11170 7.22643 7.25806 7.57481 7.72351 7.80426 7.86782 7.88962 8.02209 8.48977 8.70900 9.06525 9.64373 11.08467 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.003535 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.958608 B = 7918.644296 C = 8773.799564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.382 6.382 3 C 0.299 3.701 4 O -0.392 6.392 5 C 0.022 3.978 6 C -0.196 4.196 7 C 0.012 3.988 8 C 0.098 3.902 9 N -0.843 5.843 10 C -0.258 4.258 11 C 0.167 3.833 12 N -0.539 5.539 13 C 0.448 3.552 14 N -0.692 5.692 15 C 0.164 3.836 16 H 0.076 0.924 17 C -0.110 4.110 18 C -0.012 4.012 19 C -0.484 4.484 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.888 3.112 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.267 1.267 26 C 0.015 3.985 27 C -0.114 4.114 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.342 0.658 38 H 0.347 0.653 39 H 0.125 0.875 40 H 0.152 0.848 41 H 0.410 0.590 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.263 0.737 47 H 0.058 0.942 48 H 0.005 0.995 49 H 0.034 0.966 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 14.780 -16.838 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.302 6.302 3 C 0.204 3.796 4 O -0.312 6.312 5 C -0.074 4.074 6 C -0.205 4.205 7 C 0.004 3.996 8 C -0.032 4.032 9 N -0.374 5.374 10 C -0.282 4.282 11 C 0.006 3.994 12 N -0.257 5.257 13 C 0.209 3.791 14 N -0.320 5.320 15 C 0.061 3.939 16 H 0.094 0.906 17 C -0.149 4.149 18 C -0.050 4.050 19 C -0.503 4.503 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.192 1.192 26 C -0.023 4.023 27 C -0.152 4.152 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.155 0.845 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.249 0.751 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.024 0.976 49 H 0.053 0.947 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.584 13.568 -15.262 23.001 hybrid contribution -0.353 1.766 -0.593 1.897 sum -10.937 15.334 -15.855 24.620 Atomic orbital electron populations 1.23116 0.81389 1.03245 1.00281 1.88109 1.19493 1.29024 1.93550 1.21659 0.91721 0.83361 0.82876 1.88133 1.29648 1.81274 1.32174 1.23025 0.85682 0.99299 0.99389 1.19082 0.93703 1.07109 1.00564 1.19555 0.94005 0.93582 0.92490 1.20711 0.92237 0.93461 0.96826 1.58719 1.21661 1.21201 1.35829 1.21472 0.94113 1.07746 1.04895 1.22453 0.99002 0.89164 0.88748 1.67434 1.16433 1.26441 1.15366 1.18247 0.87862 0.86634 0.86377 1.45375 1.17477 1.43110 1.26026 1.20973 0.89397 0.88903 0.94674 0.90574 1.21885 0.98072 0.97679 0.97271 1.19709 0.94196 0.94664 0.96453 1.20084 1.21163 1.11268 0.97828 1.24835 0.95938 0.94978 0.97000 1.69837 1.42190 1.25825 1.15241 0.86664 0.82361 0.79679 0.79677 1.20543 1.21773 1.19165 1.19320 0.93514 0.94211 0.95272 1.21913 0.98662 0.97066 0.97594 0.89608 0.93397 0.93592 0.90602 0.89636 0.94112 0.92995 0.90159 0.93913 0.84490 0.83950 0.85718 0.83033 0.75122 0.93540 0.94373 0.95403 0.96274 0.92735 0.92301 0.97648 0.94731 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.65 101.05 1.08 1.24 16 2 O -0.38 -5.54 9.35 -59.04 -0.55 -6.09 16 3 C 0.30 4.11 2.41 36.00 0.09 4.20 16 4 O -0.39 -5.66 9.29 -59.04 -0.55 -6.21 16 5 C 0.02 0.23 9.82 101.05 0.99 1.22 16 6 C -0.20 -3.00 5.27 -104.27 -0.55 -3.55 16 7 C 0.01 0.15 5.38 -104.36 -0.56 -0.41 16 8 C 0.10 0.86 6.05 -4.98 -0.03 0.83 16 9 N -0.84 -6.44 9.11 -11.41 -0.10 -6.55 16 10 C -0.26 -3.06 9.76 -39.42 -0.38 -3.44 16 11 C 0.17 2.33 11.17 -17.57 -0.20 2.13 16 12 N -0.54 -9.66 9.19 -12.44 -0.11 -9.77 16 13 C 0.45 8.13 7.31 -155.01 -1.13 7.00 16 14 N -0.69 -13.36 4.89 -53.98 -0.26 -13.63 16 15 C 0.16 3.53 2.33 -67.98 -0.16 3.37 16 16 H 0.08 1.74 7.61 -51.93 -0.40 1.35 16 17 C -0.11 -2.49 5.52 -26.63 -0.15 -2.64 16 18 C -0.01 -0.30 5.59 -27.48 -0.15 -0.45 16 19 C -0.48 -13.24 5.51 -98.92 -0.55 -13.78 16 20 C 0.07 2.10 5.46 -17.82 -0.10 2.00 16 21 N -0.89 -26.30 12.73 55.43 0.71 -25.59 16 22 Si 0.89 21.91 27.27 -169.99 -4.64 17.28 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.27 -6.43 6.46 56.52 0.37 -6.06 16 26 C 0.01 0.38 5.97 -27.49 -0.16 0.22 16 27 C -0.11 -2.57 5.40 -26.64 -0.14 -2.72 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.43 4.46 -51.92 -0.23 0.20 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.91 5.12 -51.93 -0.27 0.64 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.33 7.83 -51.93 -0.41 -0.07 16 34 H 0.05 0.50 5.87 -51.93 -0.30 0.20 16 35 H 0.08 0.70 7.20 -51.93 -0.37 0.33 16 36 H 0.04 0.30 8.00 -51.93 -0.42 -0.11 16 37 H 0.34 1.75 9.08 -39.29 -0.36 1.40 16 38 H 0.35 2.66 8.93 -39.29 -0.35 2.31 16 39 H 0.12 1.10 8.04 -52.48 -0.42 0.68 16 40 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.41 7.79 5.79 -40.82 -0.24 7.56 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.03 0.68 4.78 -51.93 -0.25 0.44 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.06 1.65 7.07 -51.93 -0.37 1.28 16 48 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 49 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -32.11 385.48 -9.58 -41.70 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.77 Total: 7.86 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.11 Total: -4.79 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.22 Total: -55.54 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.10 Total: -12.30 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.64 Total: 17.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.11 -9.58 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.105 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds