Wall clock time and date at job start Tue Mar 31 2020 18:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00134 * 2 1 4 4 O 1.42906 * 109.46773 * 82.19087 * 3 2 1 5 5 C 1.42905 * 113.99604 * 286.61680 * 4 3 2 6 6 C 1.50696 * 109.47221 * 202.18534 * 3 2 1 7 7 C 1.38350 * 120.44992 * 120.67070 * 6 3 2 8 8 C 1.50698 * 120.74460 * 359.97438 * 7 6 3 9 9 N 1.46896 * 109.47148 * 286.59000 * 8 7 6 10 10 C 1.38838 * 118.50241 * 180.26692 * 7 6 3 11 11 C 1.38062 * 119.33292 * 359.74770 * 10 7 6 12 12 N 1.31942 * 120.85124 * 0.02603 * 11 10 7 13 13 C 1.32424 * 121.62547 * 359.97438 * 12 11 10 14 14 N 1.39007 * 119.70317 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00295 * 355.80694 * 14 13 12 16 16 H 1.08996 * 109.35629 * 324.82764 * 15 14 13 17 17 C 1.52958 * 109.42462 * 84.64220 * 15 14 13 18 18 C 1.53232 * 109.42030 * 183.69197 * 17 15 14 19 19 C 1.51268 * 108.53314 * 305.38236 * 18 17 15 20 20 C 1.37883 * 120.84690 * 231.32075 * 19 18 17 21 21 N 1.31513 * 120.00344 * 180.02562 * 20 19 18 22 22 Si 1.86800 * 119.99731 * 0.02663 * 20 19 18 23 23 H 1.48493 * 109.47593 * 89.99994 * 22 20 19 24 24 H 1.48506 * 109.47067 * 209.99955 * 22 20 19 25 25 H 1.48500 * 109.47355 * 329.99457 * 22 20 19 26 26 C 1.51267 * 118.30443 * 51.34166 * 19 18 17 27 27 C 1.52962 * 109.41875 * 205.00168 * 15 14 13 28 28 H 1.09001 * 109.47583 * 184.41815 * 1 2 3 29 29 H 1.09007 * 109.46872 * 304.40980 * 1 2 3 30 30 H 1.09000 * 109.47447 * 64.41211 * 1 2 3 31 31 H 1.08993 * 109.46958 * 322.19099 * 3 2 1 32 32 H 1.09002 * 109.46511 * 195.36964 * 5 4 3 33 33 H 1.09002 * 109.46993 * 315.36535 * 5 4 3 34 34 H 1.08996 * 109.47369 * 75.36756 * 5 4 3 35 35 H 1.09001 * 109.47109 * 46.58682 * 8 7 6 36 36 H 1.09000 * 109.46941 * 166.58588 * 8 7 6 37 37 H 1.00902 * 110.99860 * 184.15658 * 9 8 7 38 38 H 1.00898 * 111.00044 * 308.10528 * 9 8 7 39 39 H 1.08004 * 120.33090 * 179.77467 * 10 7 6 40 40 H 1.07999 * 119.57636 * 179.97438 * 11 10 7 41 41 H 0.97007 * 119.99957 * 175.81317 * 14 13 12 42 42 H 1.09000 * 109.47190 * 63.70978 * 17 15 14 43 43 H 1.09001 * 109.49276 * 303.68750 * 17 15 14 44 44 H 1.08997 * 109.62788 * 185.66526 * 18 17 15 45 45 H 1.09000 * 109.78045 * 65.18264 * 18 17 15 46 46 H 0.96994 * 120.00534 * 180.02562 * 21 20 19 47 47 H 1.09004 * 109.62135 * 188.93617 * 26 19 18 48 48 H 1.09003 * 109.78207 * 68.46378 * 26 19 18 49 49 H 1.09003 * 109.47899 * 56.31469 * 27 15 14 50 50 H 1.09006 * 109.47950 * 296.29514 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.0367 1.8150 1.3349 5 6 0.7566 2.2116 1.8310 6 6 3.4164 1.2292 -0.5365 7 6 3.7785 1.9517 -1.6594 8 6 2.7774 2.8271 -2.3682 9 7 1.8265 1.9851 -3.1062 10 6 5.0833 1.8471 -2.1221 11 6 5.9761 1.0359 -1.4507 12 7 5.6040 0.3617 -0.3793 13 6 4.3690 0.4349 0.0930 14 7 4.0200 -0.2931 1.2246 15 6 4.9886 -1.2068 1.8353 16 1 5.5942 -1.6663 1.0542 17 6 5.8954 -0.4249 2.7872 18 6 6.9663 -1.3620 3.3555 19 6 6.2781 -2.5519 3.9869 20 6 6.5791 -2.9413 5.2749 21 7 5.9710 -3.9787 5.8073 22 14 7.8507 -1.9952 6.2635 23 1 7.1813 -0.9033 7.0151 24 1 8.5200 -2.9150 7.2182 25 1 8.8618 -1.4153 5.3435 26 6 5.2516 -3.3039 3.1690 27 6 4.2430 -2.2964 2.6076 28 1 -0.3634 -1.0246 0.0792 29 1 -0.3633 0.5808 0.8479 30 1 -0.3634 0.4438 -0.9269 31 1 1.4163 1.9675 -0.6300 32 1 0.8869 2.8282 2.7204 33 1 0.2318 2.7838 1.0659 34 1 0.1749 1.3256 2.0851 35 1 2.2381 3.4284 -1.6362 36 1 3.2982 3.4839 -3.0650 37 1 1.1861 2.5493 -3.6445 38 1 2.3104 1.3250 -3.6962 39 1 5.3969 2.3953 -2.9983 40 1 6.9920 0.9513 -1.8075 41 1 3.1350 -0.1962 1.6098 42 1 5.2994 -0.0166 3.6034 43 1 6.3757 0.3897 2.2450 44 1 7.5514 -0.8350 4.1091 45 1 7.6224 -1.7014 2.5539 46 1 6.1824 -4.2524 6.7135 47 1 4.7351 -4.0247 3.8030 48 1 5.7440 -3.8253 2.3481 49 1 3.5520 -2.8085 1.9379 50 1 3.6858 -1.8440 3.4280 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:59 Heat of formation + Delta-G solvation = -76.282293 kcal Electronic energy + Delta-G solvation = -30874.478032 eV Core-core repulsion = 26900.549544 eV Total energy + Delta-G solvation = -3973.928488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64961 -39.79573 -39.03497 -36.89210 -36.63262 -35.54826 -33.76004 -32.72247 -31.61673 -31.02053 -29.08296 -28.39627 -26.83553 -26.50498 -25.72015 -23.97371 -23.35028 -22.74813 -21.83467 -20.98791 -18.92906 -18.29184 -18.18944 -17.84702 -17.49791 -16.99402 -16.57370 -16.39339 -15.93323 -15.71567 -15.43604 -15.30238 -15.08843 -14.93733 -14.79993 -14.47089 -14.41806 -14.20933 -13.95278 -13.90051 -13.81407 -13.41433 -13.12914 -13.01826 -12.79221 -12.70816 -12.49598 -12.34200 -12.26017 -11.86840 -11.82091 -11.55902 -11.11528 -10.92002 -10.81193 -10.68235 -10.55994 -10.54009 -10.41248 -10.14807 -9.63452 -8.47790 -8.16529 -6.10232 0.26188 0.60141 1.37930 1.40407 1.50301 2.40020 2.41570 2.61182 2.83270 3.11986 3.33123 3.59639 3.68798 3.82453 3.89090 4.04825 4.10549 4.20925 4.26522 4.27200 4.36817 4.45833 4.54461 4.56062 4.57191 4.62033 4.66218 4.71437 4.76899 4.86803 4.94347 4.95695 4.99864 5.06550 5.09442 5.22488 5.25942 5.32263 5.41584 5.57061 5.61322 5.75756 5.76857 5.82650 6.08187 6.15906 6.17253 6.36000 6.45267 6.59871 6.64620 6.94363 7.46493 7.47829 8.94576 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.003535 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.958608 B = 7918.644296 C = 8773.799564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.410 6.410 3 C 0.304 3.696 4 O -0.420 6.420 5 C 0.015 3.985 6 C -0.208 4.208 7 C 0.010 3.990 8 C 0.103 3.897 9 N -0.850 5.850 10 C -0.237 4.237 11 C 0.147 3.853 12 N -0.576 5.576 13 C 0.418 3.582 14 N -0.702 5.702 15 C 0.183 3.817 16 H 0.060 0.940 17 C -0.098 4.098 18 C -0.011 4.011 19 C -0.498 4.498 20 C 0.023 3.977 21 N -0.930 5.930 22 Si 0.942 3.058 23 H -0.275 1.275 24 H -0.289 1.289 25 H -0.256 1.256 26 C 0.014 3.986 27 C -0.100 4.100 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.358 0.642 38 H 0.348 0.652 39 H 0.164 0.836 40 H 0.177 0.823 41 H 0.409 0.591 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.263 0.737 47 H 0.031 0.969 48 H -0.001 1.001 49 H 0.046 0.954 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.805 17.653 -19.083 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.331 6.331 3 C 0.209 3.791 4 O -0.341 6.341 5 C -0.080 4.080 6 C -0.216 4.216 7 C 0.002 3.998 8 C -0.027 4.027 9 N -0.382 5.382 10 C -0.260 4.260 11 C -0.012 4.012 12 N -0.295 5.295 13 C 0.181 3.819 14 N -0.333 5.333 15 C 0.078 3.922 16 H 0.078 0.922 17 C -0.137 4.137 18 C -0.049 4.049 19 C -0.517 4.517 20 C -0.175 4.175 21 N -0.570 5.570 22 Si 0.768 3.232 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.180 1.180 26 C -0.024 4.024 27 C -0.139 4.139 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.182 0.818 40 H 0.194 0.806 41 H 0.248 0.752 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.018 0.982 49 H 0.064 0.936 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.101 16.488 -17.571 26.530 hybrid contribution -0.242 0.916 -0.068 0.950 sum -11.343 17.404 -17.640 27.253 Atomic orbital electron populations 1.23292 0.79659 1.03939 1.01623 1.88069 1.21534 1.29768 1.93717 1.21668 0.91119 0.83386 0.82899 1.88092 1.31829 1.81504 1.32705 1.23223 0.84567 0.99850 1.00382 1.19441 0.94139 1.06798 1.01219 1.20060 0.95198 0.92996 0.91576 1.20711 0.91872 0.92944 0.97205 1.58656 1.21713 1.21520 1.36340 1.21910 0.93335 1.05881 1.04887 1.22992 1.00691 0.89289 0.88191 1.67349 1.16941 1.27973 1.17198 1.18499 0.88887 0.87909 0.86620 1.44999 1.16820 1.44126 1.27312 1.20471 0.89327 0.88742 0.93624 0.92203 1.21729 0.97514 0.97355 0.97126 1.19693 0.94650 0.94209 0.96346 1.20602 1.21121 1.11804 0.98160 1.25590 0.97841 0.95848 0.98234 1.69963 1.43939 1.27488 1.15641 0.85792 0.80406 0.78576 0.78461 1.20033 1.21493 1.18033 1.19255 0.94056 0.94497 0.94619 1.21684 0.97872 0.96769 0.97543 0.89352 0.92143 0.92087 0.88734 0.88956 0.91723 0.92764 0.89902 0.91378 0.82673 0.83891 0.81840 0.80641 0.75227 0.94483 0.93793 0.95182 0.96365 0.92749 0.95068 0.98229 0.93553 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 10.65 113.37 1.21 1.41 16 2 O -0.41 -11.56 9.35 -126.21 -1.18 -12.74 16 3 C 0.30 7.92 2.41 71.23 0.17 8.10 16 4 O -0.42 -11.75 9.29 -126.21 -1.17 -12.93 16 5 C 0.02 0.29 9.82 113.37 1.11 1.40 16 6 C -0.21 -6.09 5.27 -19.63 -0.10 -6.19 16 7 C 0.01 0.22 5.38 -19.69 -0.11 0.12 16 8 C 0.10 1.40 6.05 85.56 0.52 1.92 16 9 N -0.85 -10.03 9.11 -190.02 -1.73 -11.76 16 10 C -0.24 -4.82 9.76 22.37 0.22 -4.60 16 11 C 0.15 3.83 11.17 84.63 0.95 4.78 16 12 N -0.58 -20.42 9.19 -193.27 -1.78 -22.20 16 13 C 0.42 15.08 7.31 133.04 0.97 16.05 16 14 N -0.70 -27.51 4.89 -324.70 -1.59 -29.10 16 15 C 0.18 8.06 2.33 44.97 0.10 8.16 16 16 H 0.06 2.81 7.61 -2.39 -0.02 2.80 16 17 C -0.10 -4.49 5.52 30.66 0.17 -4.32 16 18 C -0.01 -0.54 5.59 30.11 0.17 -0.37 16 19 C -0.50 -27.79 5.51 -16.17 -0.09 -27.88 16 20 C 0.02 1.32 5.46 84.66 0.46 1.78 16 21 N -0.93 -56.38 12.73 21.45 0.27 -56.11 16 22 Si 0.94 45.28 27.27 68.60 1.87 47.15 16 23 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.26 -11.76 6.46 99.48 0.64 -11.12 16 26 C 0.01 0.74 5.97 30.10 0.18 0.92 16 27 C -0.10 -4.67 5.40 30.65 0.17 -4.50 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 0.99 4.46 -2.38 -0.01 0.98 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 2.02 5.12 -2.39 -0.01 2.00 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 0.89 7.83 -2.39 -0.02 0.87 16 34 H 0.05 0.98 5.87 -2.39 -0.01 0.97 16 35 H 0.08 1.13 7.20 -2.39 -0.02 1.11 16 36 H 0.07 0.62 8.00 -2.39 -0.02 0.60 16 37 H 0.36 2.33 9.08 -89.69 -0.81 1.52 16 38 H 0.35 4.20 8.93 -89.70 -0.80 3.40 16 39 H 0.16 2.03 8.04 -2.91 -0.02 2.00 16 40 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.41 15.85 5.79 -92.70 -0.54 15.32 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.04 1.94 8.08 -2.39 -0.02 1.92 16 44 H 0.03 1.46 4.78 -2.39 -0.01 1.45 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.03 1.82 7.07 -2.38 -0.02 1.80 16 48 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 49 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.04 2.02 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -71.60 385.48 -0.43 -72.03 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -1.23 Total: 28.89 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 6.10 Total: -3.25 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -4.82 Total: -119.17 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -2.35 Total: -25.66 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.87 Total: 47.15 kcal Total: -71.60 -0.43 -72.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.248 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds