Wall clock time and date at job start Tue Mar 31 2020 18:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42910 * 113.99945 * 2 1 4 4 C 1.53002 * 109.47074 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47073 * 65.00061 * 4 3 2 6 6 C 1.35460 * 116.99926 * 179.97438 * 5 4 3 7 7 N 1.32331 * 119.19271 * 0.02562 * 6 5 4 8 8 C 1.32289 * 120.75474 * 180.02562 * 7 6 5 9 9 C 1.38611 * 119.17513 * 359.97438 * 8 7 6 10 10 C 1.38575 * 118.52168 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.41072 * 179.72530 * 10 9 8 12 12 N 1.46900 * 109.47262 * 94.99720 * 11 10 9 13 13 C 1.46903 * 111.00222 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47135 * 275.00292 * 13 12 11 15 15 C 1.52994 * 109.47371 * 299.99532 * 14 13 12 16 16 C 1.52998 * 109.47088 * 300.00495 * 15 14 13 17 17 C 1.50707 * 109.46972 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99995 * 240.00078 * 17 16 15 19 19 C 1.37882 * 119.99799 * 60.00071 * 17 16 15 20 20 N 1.31517 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47263 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47198 * 119.99696 * 21 19 17 24 24 H 1.48498 * 109.47100 * 239.99910 * 21 19 17 25 25 C 1.52997 * 109.47272 * 59.99893 * 16 15 14 26 26 C 1.52998 * 109.47109 * 154.99928 * 13 12 11 27 27 N 1.32309 * 119.19279 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47141 * 299.99972 * 1 2 3 29 29 H 1.09002 * 109.47220 * 60.00051 * 1 2 3 30 30 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 59.99789 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00252 * 3 2 1 33 33 H 1.08991 * 109.46956 * 305.00019 * 4 3 2 34 34 H 1.08996 * 109.46664 * 184.99775 * 4 3 2 35 35 H 1.07999 * 120.41112 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.74059 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.46768 * 214.99373 * 11 10 9 38 38 H 1.08996 * 109.47391 * 334.99866 * 11 10 9 39 39 H 1.00905 * 110.99605 * 56.04400 * 12 11 10 40 40 H 1.09000 * 109.46818 * 35.00306 * 13 12 11 41 41 H 1.09001 * 109.47154 * 60.00236 * 14 13 12 42 42 H 1.09001 * 109.47003 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47164 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.46902 * 60.00238 * 15 14 13 45 45 H 1.08993 * 109.46963 * 299.99393 * 16 15 14 46 46 H 0.97003 * 119.99544 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.47022 * 180.02562 * 25 16 15 48 48 H 1.09002 * 109.47280 * 59.99913 * 25 16 15 49 49 H 1.09002 * 109.47039 * 180.02562 * 26 13 12 50 50 H 1.08999 * 109.46903 * 300.00618 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.2976 0.3995 -1.3836 7 7 6.1221 0.7837 -0.4226 8 6 7.4292 0.6228 -0.5482 9 6 7.9308 0.0437 -1.7033 10 6 7.0385 -0.3467 -2.6891 11 6 7.5378 -0.9750 -3.9646 12 7 7.4935 -2.4380 -3.8399 13 6 7.9736 -3.0859 -5.0678 14 6 6.8211 -3.2019 -6.0674 15 6 5.6971 -4.0397 -5.4549 16 6 6.2256 -5.4363 -5.1215 17 6 5.1185 -6.2614 -4.5176 18 1 5.2264 -6.6628 -3.5208 19 6 3.9679 -6.5038 -5.2376 20 7 3.8364 -6.0145 -6.4513 21 14 2.5960 -7.5271 -4.4893 22 1 2.9881 -7.9574 -3.1232 23 1 1.3556 -6.7139 -4.4157 24 1 2.3539 -8.7239 -5.3343 25 6 7.3780 -5.3203 -4.1219 26 6 8.5022 -4.4824 -4.7344 27 7 5.7431 -0.1564 -2.4986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 8.0970 0.9380 0.2398 36 1 8.9935 -0.0993 -1.8326 37 1 6.9055 -0.6619 -4.7955 38 1 8.5639 -0.6570 -4.1489 39 1 6.5641 -2.7529 -3.6049 40 1 8.7745 -2.4890 -5.5042 41 1 6.4447 -2.2069 -6.3049 42 1 7.1775 -3.6822 -6.9787 43 1 4.8758 -4.1219 -6.1669 44 1 5.3408 -3.5590 -4.5438 45 1 6.5818 -5.9169 -6.0326 46 1 3.0270 -6.1853 -6.9580 47 1 7.7548 -6.3153 -3.8847 48 1 7.0217 -4.8396 -3.2107 49 1 8.8588 -4.9630 -5.6455 50 1 9.3232 -4.3997 -4.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:39 Heat of formation + Delta-G solvation = -38.270706 kcal Electronic energy + Delta-G solvation = -29236.941881 eV Core-core repulsion = 25264.661699 eV Total energy + Delta-G solvation = -3972.280182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27608 -38.98420 -38.42366 -37.59510 -34.99853 -33.52885 -32.43122 -31.42088 -30.35298 -29.57883 -28.88543 -26.60257 -26.06109 -24.43610 -24.08635 -23.37034 -21.90274 -21.40222 -20.66654 -18.69820 -18.02161 -17.83848 -17.16787 -16.25252 -16.20698 -15.93674 -15.72700 -15.60398 -15.32698 -14.76899 -14.53234 -14.35847 -13.80954 -13.73869 -13.48981 -13.41867 -12.78689 -12.65180 -12.45629 -12.35603 -12.01379 -11.85922 -11.67873 -11.52107 -11.25077 -11.19494 -11.17627 -11.14396 -10.83112 -10.60775 -10.51486 -10.09980 -9.97766 -9.96076 -9.83081 -9.29852 -9.18939 -9.02916 -8.84154 -8.56010 -8.19882 -7.96795 -5.88949 -3.94283 0.94872 1.02185 2.40889 3.36380 3.44291 3.47430 3.48850 3.68681 3.92967 4.27234 4.49451 4.52738 4.63259 4.78070 4.86211 4.97908 5.03741 5.06191 5.14830 5.15512 5.20137 5.32431 5.40703 5.44438 5.51979 5.52810 5.63844 5.69614 5.77061 5.87792 6.07185 6.22100 6.30646 6.44731 6.53067 6.63929 6.72024 6.75121 6.86254 6.87419 7.04978 7.11986 7.28062 7.28710 7.41597 7.61091 7.77925 7.85073 8.07249 8.12617 8.25852 8.58297 9.10268 9.70353 11.16502 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.003682 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.696256 B = 7602.205442 C =10556.748635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.061 3.939 4 C 0.079 3.921 5 O -0.279 6.279 6 C 0.503 3.497 7 N -0.576 5.576 8 C 0.181 3.819 9 C -0.250 4.250 10 C 0.227 3.773 11 C 0.103 3.897 12 N -0.677 5.677 13 C 0.094 3.906 14 C -0.149 4.149 15 C -0.108 4.108 16 C 0.049 3.951 17 C -0.509 4.509 18 H 0.054 0.946 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.886 3.114 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.108 4.108 26 C -0.102 4.102 27 N -0.516 5.516 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.151 0.849 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.359 0.641 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.023 0.977 46 H 0.257 0.743 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 18.551 11.203 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.016 4.016 4 C 0.003 3.997 5 O -0.180 6.180 6 C 0.201 3.799 7 N -0.306 5.306 8 C 0.017 3.983 9 C -0.273 4.273 10 C 0.080 3.920 11 C -0.027 4.027 12 N -0.313 5.313 13 C -0.016 4.016 14 C -0.188 4.188 15 C -0.146 4.146 16 C 0.031 3.969 17 C -0.548 4.548 18 H 0.072 0.928 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.715 3.285 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.145 4.145 26 C -0.140 4.140 27 N -0.242 5.242 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.188 0.812 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.182 0.818 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.074 0.926 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.728 18.435 11.368 21.977 hybrid contribution -0.937 -0.153 -0.127 0.958 sum 2.791 18.281 11.241 21.642 Atomic orbital electron populations 1.22773 0.80659 1.03279 0.99807 1.88021 1.19987 1.26725 1.95375 1.22634 0.91376 0.86137 1.01473 1.22756 0.92930 0.98726 0.85303 1.86165 1.15859 1.75850 1.40152 1.20607 0.85298 0.88176 0.85841 1.68040 1.05860 1.25224 1.31495 1.22905 0.89956 0.89797 0.95684 1.22556 1.02869 1.05532 0.96382 1.21534 0.86518 0.88558 0.95438 1.20911 1.00543 0.90125 0.91082 1.60857 1.33154 1.02018 1.35246 1.21527 0.96234 0.95396 0.88417 1.22264 0.97996 0.99498 0.99034 1.21591 0.97448 0.95830 0.99745 1.18649 0.91789 0.92509 0.93982 1.21297 1.01046 1.31307 1.01129 0.92820 1.24955 0.98268 0.95893 0.94852 1.69887 1.27348 1.45423 1.10400 0.86623 0.82423 0.80128 0.79364 1.19852 1.21111 1.21184 1.21585 0.95944 0.97363 0.99656 1.21514 0.98311 0.94257 0.99954 1.67412 1.17112 1.17598 1.22089 0.94160 0.93833 0.89263 0.90768 0.92014 0.90275 0.89773 0.81218 0.83108 0.92661 0.89040 0.81831 0.91936 0.94098 0.92253 0.89031 0.94895 0.95923 0.93274 0.93869 0.92961 0.92572 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.92 10.67 -40.08 -0.43 -5.34 16 3 C 0.06 0.58 6.32 37.16 0.23 0.82 16 4 C 0.08 0.88 5.67 37.16 0.21 1.09 16 5 O -0.28 -4.38 10.16 -22.92 -0.23 -4.61 16 6 C 0.50 8.00 8.49 -91.25 -0.77 7.22 16 7 N -0.58 -7.63 9.23 -14.73 -0.14 -7.76 16 8 C 0.18 1.90 11.30 -17.22 -0.19 1.71 16 9 C -0.25 -2.76 9.83 -39.32 -0.39 -3.15 16 10 C 0.23 3.22 6.33 -82.26 -0.52 2.70 16 11 C 0.10 1.41 5.84 -4.98 -0.03 1.38 16 12 N -0.68 -11.04 5.76 -107.99 -0.62 -11.67 16 13 C 0.09 1.54 2.86 -67.71 -0.19 1.35 16 14 C -0.15 -2.85 5.52 -26.73 -0.15 -2.99 16 15 C -0.11 -2.56 4.73 -26.73 -0.13 -2.69 16 16 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 17 C -0.51 -14.36 8.56 -34.44 -0.29 -14.65 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 20 N -0.89 -26.01 11.32 55.43 0.63 -25.39 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C -0.11 -2.29 4.90 -26.73 -0.13 -2.42 16 26 C -0.10 -1.79 5.64 -26.73 -0.15 -1.94 16 27 N -0.52 -8.77 10.40 -10.95 -0.11 -8.89 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.06 0.81 7.44 -51.93 -0.39 0.42 16 38 H 0.09 0.99 7.98 -51.93 -0.41 0.57 16 39 H 0.36 6.94 5.55 -39.29 -0.22 6.72 16 40 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 41 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 44 H 0.03 0.80 6.26 -51.93 -0.32 0.47 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 47 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.05 1.14 7.21 -51.93 -0.37 0.76 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -33.01 398.31 -9.88 -42.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.28 Total: 5.21 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.68 Total: -7.50 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.24 Total: -53.70 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.66 Total: -9.95 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.01 -9.88 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.624 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds