Wall clock time and date at job start Tue Mar 31 2020 18:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42910 * 113.99945 * 2 1 4 4 C 1.53002 * 109.47074 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47073 * 65.00061 * 4 3 2 6 6 C 1.35460 * 116.99926 * 179.97438 * 5 4 3 7 7 N 1.32331 * 119.19271 * 0.02562 * 6 5 4 8 8 C 1.32289 * 120.75474 * 180.02562 * 7 6 5 9 9 C 1.38611 * 119.17513 * 359.97438 * 8 7 6 10 10 C 1.38575 * 118.52168 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.41072 * 179.72530 * 10 9 8 12 12 N 1.46900 * 109.47262 * 94.99720 * 11 10 9 13 13 C 1.46903 * 111.00222 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47135 * 275.00292 * 13 12 11 15 15 C 1.52994 * 109.47371 * 299.99532 * 14 13 12 16 16 C 1.52998 * 109.47088 * 300.00495 * 15 14 13 17 17 C 1.50707 * 109.46972 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99995 * 240.00078 * 17 16 15 19 19 C 1.37882 * 119.99799 * 60.00071 * 17 16 15 20 20 N 1.31517 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47263 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47198 * 119.99696 * 21 19 17 24 24 H 1.48498 * 109.47100 * 239.99910 * 21 19 17 25 25 C 1.52997 * 109.47272 * 59.99893 * 16 15 14 26 26 C 1.52998 * 109.47109 * 154.99928 * 13 12 11 27 27 N 1.32309 * 119.19279 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47141 * 299.99972 * 1 2 3 29 29 H 1.09002 * 109.47220 * 60.00051 * 1 2 3 30 30 H 1.08998 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46917 * 59.99789 * 3 2 1 32 32 H 1.09003 * 109.46841 * 300.00252 * 3 2 1 33 33 H 1.08991 * 109.46956 * 305.00019 * 4 3 2 34 34 H 1.08996 * 109.46664 * 184.99775 * 4 3 2 35 35 H 1.07999 * 120.41112 * 180.02562 * 8 7 6 36 36 H 1.08004 * 120.74059 * 179.97438 * 9 8 7 37 37 H 1.09002 * 109.46768 * 214.99373 * 11 10 9 38 38 H 1.08996 * 109.47391 * 334.99866 * 11 10 9 39 39 H 1.00905 * 110.99605 * 56.04400 * 12 11 10 40 40 H 1.09000 * 109.46818 * 35.00306 * 13 12 11 41 41 H 1.09001 * 109.47154 * 60.00236 * 14 13 12 42 42 H 1.09001 * 109.47003 * 179.97438 * 14 13 12 43 43 H 1.09002 * 109.47164 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.46902 * 60.00238 * 15 14 13 45 45 H 1.08993 * 109.46963 * 299.99393 * 16 15 14 46 46 H 0.97003 * 119.99544 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.47022 * 180.02562 * 25 16 15 48 48 H 1.09002 * 109.47280 * 59.99913 * 25 16 15 49 49 H 1.09002 * 109.47039 * 180.02562 * 26 13 12 50 50 H 1.08999 * 109.46903 * 300.00618 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.2976 0.3995 -1.3836 7 7 6.1221 0.7837 -0.4226 8 6 7.4292 0.6228 -0.5482 9 6 7.9308 0.0437 -1.7033 10 6 7.0385 -0.3467 -2.6891 11 6 7.5378 -0.9750 -3.9646 12 7 7.4935 -2.4380 -3.8399 13 6 7.9736 -3.0859 -5.0678 14 6 6.8211 -3.2019 -6.0674 15 6 5.6971 -4.0397 -5.4549 16 6 6.2256 -5.4363 -5.1215 17 6 5.1185 -6.2614 -4.5176 18 1 5.2264 -6.6628 -3.5208 19 6 3.9679 -6.5038 -5.2376 20 7 3.8364 -6.0145 -6.4513 21 14 2.5960 -7.5271 -4.4893 22 1 2.9881 -7.9574 -3.1232 23 1 1.3556 -6.7139 -4.4157 24 1 2.3539 -8.7239 -5.3343 25 6 7.3780 -5.3203 -4.1219 26 6 8.5022 -4.4824 -4.7344 27 7 5.7431 -0.1564 -2.4986 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1766 0.0889 35 1 8.0970 0.9380 0.2398 36 1 8.9935 -0.0993 -1.8326 37 1 6.9055 -0.6619 -4.7955 38 1 8.5639 -0.6570 -4.1489 39 1 6.5641 -2.7529 -3.6049 40 1 8.7745 -2.4890 -5.5042 41 1 6.4447 -2.2069 -6.3049 42 1 7.1775 -3.6822 -6.9787 43 1 4.8758 -4.1219 -6.1669 44 1 5.3408 -3.5590 -4.5438 45 1 6.5818 -5.9169 -6.0326 46 1 3.0270 -6.1853 -6.9580 47 1 7.7548 -6.3153 -3.8847 48 1 7.0217 -4.8396 -3.2107 49 1 8.8588 -4.9630 -5.6455 50 1 9.3232 -4.3997 -4.0223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:38 Heat of formation + Delta-G solvation = -63.176519 kcal Electronic energy + Delta-G solvation = -29238.021878 eV Core-core repulsion = 25264.661699 eV Total energy + Delta-G solvation = -3973.360179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25247 -40.15557 -39.70165 -38.50051 -36.35410 -34.98384 -33.89730 -32.66090 -31.30211 -31.21563 -30.44410 -27.47718 -27.22648 -26.29494 -25.04234 -24.28116 -23.18955 -22.73442 -22.42183 -19.72484 -19.58394 -18.82981 -18.40152 -18.03811 -17.25443 -16.91969 -16.77451 -16.54274 -16.46109 -16.20396 -15.82760 -15.56295 -15.22724 -14.96746 -14.75519 -14.43985 -14.36207 -13.95060 -13.81454 -13.59786 -13.37528 -13.15594 -13.00479 -12.82633 -12.65954 -12.51234 -12.50482 -12.46106 -12.07855 -12.04489 -11.91782 -11.76996 -11.72372 -11.63895 -11.15070 -10.74212 -10.66343 -10.52384 -10.32056 -10.22443 -9.96682 -9.28750 -8.08049 -6.21160 -0.03311 0.11537 1.35133 1.37493 1.48378 1.49337 2.41741 2.68007 2.74878 3.03901 3.18007 3.30257 3.57162 3.63730 3.87432 4.06981 4.09490 4.12450 4.19951 4.24531 4.29833 4.31038 4.42928 4.44637 4.50217 4.54499 4.63486 4.65539 4.66120 4.73041 4.81353 4.86763 4.91074 4.94944 5.00926 5.10018 5.23131 5.28778 5.30586 5.45416 5.52669 5.64155 5.72635 5.76184 6.06852 6.12711 6.13666 6.20995 6.25497 6.33213 6.44846 6.92260 7.08569 7.46561 8.95326 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007691 B = 0.003682 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3639.696256 B = 7602.205442 C =10556.748635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.059 3.941 4 C 0.076 3.924 5 O -0.311 6.311 6 C 0.481 3.519 7 N -0.576 5.576 8 C 0.182 3.818 9 C -0.235 4.235 10 C 0.201 3.799 11 C 0.105 3.895 12 N -0.676 5.676 13 C 0.101 3.899 14 C -0.141 4.141 15 C -0.097 4.097 16 C 0.048 3.952 17 C -0.533 4.533 18 H 0.045 0.955 19 C 0.013 3.987 20 N -0.915 5.915 21 Si 0.945 3.055 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.276 1.276 25 C -0.099 4.099 26 C -0.096 4.096 27 N -0.563 5.563 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.219 0.781 36 H 0.189 0.811 37 H 0.039 0.961 38 H 0.131 0.869 39 H 0.337 0.663 40 H 0.103 0.897 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.018 0.982 45 H -0.007 1.007 46 H 0.258 0.742 47 H 0.038 0.962 48 H 0.043 0.957 49 H 0.061 0.939 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 20.134 12.770 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.017 4.017 4 C 0.001 3.999 5 O -0.213 6.213 6 C 0.178 3.822 7 N -0.307 5.307 8 C 0.018 3.982 9 C -0.257 4.257 10 C 0.056 3.944 11 C -0.024 4.024 12 N -0.309 5.309 13 C -0.008 4.008 14 C -0.180 4.180 15 C -0.135 4.135 16 C 0.030 3.970 17 C -0.571 4.571 18 H 0.063 0.937 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.772 3.228 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.202 1.202 25 C -0.137 4.137 26 C -0.134 4.134 27 N -0.291 5.291 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.206 0.794 37 H 0.058 0.942 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.012 0.988 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.080 0.920 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.040 20.024 12.934 24.591 hybrid contribution -1.646 -0.624 -0.571 1.851 sum 4.393 19.400 12.363 23.420 Atomic orbital electron populations 1.22914 0.79199 1.03565 1.01284 1.87959 1.21856 1.28808 1.95700 1.22844 0.90297 0.85286 1.03256 1.23020 0.93995 0.99261 0.83651 1.86116 1.16473 1.76561 1.42172 1.20772 0.85702 0.89306 0.86419 1.68129 1.06996 1.25039 1.30526 1.23789 0.89405 0.88355 0.96658 1.22948 1.04129 1.03470 0.95149 1.21775 0.86299 0.89692 0.96631 1.21063 1.02392 0.88259 0.90681 1.60878 1.31479 1.03799 1.34738 1.21523 0.95830 0.95687 0.87780 1.22162 0.97539 0.98758 0.99507 1.21317 0.97955 0.96032 0.98191 1.18606 0.92489 0.92406 0.93527 1.21698 1.02481 1.31995 1.00967 0.93654 1.25693 1.00496 0.97040 0.95324 1.70025 1.27878 1.46234 1.11388 0.85694 0.79499 0.78835 0.78808 1.19412 1.20984 1.20190 1.21428 0.95914 0.98031 0.98340 1.21479 0.97336 0.93997 1.00555 1.67297 1.19122 1.19151 1.23510 0.91583 0.93388 0.89699 0.87100 0.91836 0.91032 0.87701 0.76494 0.79363 0.94244 0.85111 0.84306 0.87881 0.93239 0.92426 0.93108 0.96385 0.98847 0.93271 0.94328 0.93858 0.92012 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.10 10.67 -144.35 -1.54 -12.64 16 3 C 0.06 1.12 6.32 71.98 0.45 1.57 16 4 C 0.08 1.69 5.67 71.98 0.41 2.10 16 5 O -0.31 -10.18 10.16 -82.95 -0.84 -11.02 16 6 C 0.48 15.51 8.49 180.57 1.53 17.04 16 7 N -0.58 -14.52 9.23 -313.46 -2.89 -17.42 16 8 C 0.18 3.23 11.30 84.71 0.96 4.19 16 9 C -0.23 -4.37 9.83 22.44 0.22 -4.15 16 10 C 0.20 5.44 6.33 42.57 0.27 5.71 16 11 C 0.11 2.66 5.84 85.56 0.50 3.15 16 12 N -0.68 -20.95 5.76 -495.57 -2.85 -23.80 16 13 C 0.10 3.10 2.86 44.91 0.13 3.22 16 14 C -0.14 -5.35 5.52 30.59 0.17 -5.18 16 15 C -0.10 -4.77 4.73 30.59 0.14 -4.63 16 16 C 0.05 2.50 2.10 -11.54 -0.02 2.47 16 17 C -0.53 -31.18 8.56 25.60 0.22 -30.96 16 18 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 19 C 0.01 0.74 5.30 84.66 0.45 1.19 16 20 N -0.92 -55.44 11.32 21.45 0.24 -55.20 16 21 Si 0.95 46.43 29.54 68.60 2.03 48.46 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 C -0.10 -4.23 4.90 30.59 0.15 -4.08 16 26 C -0.10 -3.13 5.64 30.59 0.17 -2.96 16 27 N -0.56 -19.54 10.40 -301.50 -3.14 -22.68 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.65 8.09 -2.39 -0.02 1.63 16 34 H 0.11 1.80 8.09 -2.39 -0.02 1.78 16 35 H 0.22 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.04 1.12 7.44 -2.39 -0.02 1.10 16 38 H 0.13 2.22 7.98 -2.39 -0.02 2.20 16 39 H 0.34 13.19 5.55 -89.69 -0.50 12.69 16 40 H 0.10 2.44 7.80 -2.39 -0.02 2.42 16 41 H 0.05 1.78 7.45 -2.39 -0.02 1.76 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 2.91 6.07 -2.39 -0.01 2.89 16 44 H 0.02 0.91 6.26 -2.39 -0.01 0.90 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 47 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.04 1.90 7.21 -2.39 -0.02 1.88 16 49 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -77.45 398.31 -1.57 -79.01 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.43 Total: 24.85 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 7.00 Total: -9.56 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -8.64 Total: -119.10 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -2.38 Total: -23.66 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -77.45 -1.57 -79.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.836 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds