Wall clock time and date at job start Tue Mar 31 2020 18:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 113.99920 * 2 1 4 4 C 1.53001 * 109.47138 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47226 * 64.99558 * 4 3 2 6 6 C 1.35519 * 116.99635 * 180.02562 * 5 4 3 7 7 C 1.39426 * 120.50704 * 180.02562 * 6 5 4 8 8 C 1.38186 * 118.34810 * 180.02562 * 7 6 5 9 9 C 1.50703 * 120.40971 * 179.97438 * 8 7 6 10 10 N 1.46899 * 109.46939 * 95.00795 * 9 8 7 11 11 C 1.46904 * 111.00124 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.46927 * 204.99705 * 11 10 9 13 13 C 1.53004 * 109.46837 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47202 * 60.00201 * 13 12 11 15 15 C 1.50699 * 109.47233 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99645 * 5.43896 * 15 14 13 17 17 C 1.37878 * 120.00130 * 185.44361 * 15 14 13 18 18 N 1.31520 * 119.99824 * 9.57458 * 17 15 14 19 19 Si 1.86797 * 120.00124 * 189.57177 * 17 15 14 20 20 H 1.48501 * 109.47078 * 94.98819 * 19 17 15 21 21 H 1.48496 * 109.46934 * 214.99316 * 19 17 15 22 22 H 1.48503 * 109.46865 * 334.99145 * 19 17 15 23 23 C 1.53002 * 109.46993 * 299.99906 * 14 13 12 24 24 C 1.52999 * 109.47009 * 84.99609 * 11 10 9 25 25 N 1.32517 * 119.17873 * 0.26054 * 8 7 6 26 26 C 1.31761 * 120.96684 * 359.47681 * 25 8 7 27 27 N 1.31798 * 121.80953 * 0.53177 * 26 25 8 28 28 H 1.08998 * 109.47121 * 59.99798 * 1 2 3 29 29 H 1.08999 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47107 * 300.00286 * 1 2 3 31 31 H 1.09000 * 109.47477 * 59.99954 * 3 2 1 32 32 H 1.08999 * 109.47340 * 299.99871 * 3 2 1 33 33 H 1.09004 * 109.46799 * 304.99856 * 4 3 2 34 34 H 1.09004 * 109.47546 * 185.00066 * 4 3 2 35 35 H 1.07996 * 120.82438 * 0.04615 * 7 6 5 36 36 H 1.08993 * 109.47333 * 335.00221 * 9 8 7 37 37 H 1.09006 * 109.46882 * 215.00386 * 9 8 7 38 38 H 1.00894 * 111.00095 * 56.04007 * 10 9 8 39 39 H 1.09005 * 109.46453 * 324.99753 * 11 10 9 40 40 H 1.08996 * 109.47213 * 59.99886 * 12 11 10 41 41 H 1.09002 * 109.47313 * 300.00057 * 12 11 10 42 42 H 1.09004 * 109.47082 * 179.97438 * 13 12 11 43 43 H 1.08998 * 109.47059 * 299.99577 * 13 12 11 44 44 H 1.08993 * 109.47167 * 59.99660 * 14 13 12 45 45 H 0.96999 * 119.99783 * 180.02562 * 18 17 15 46 46 H 1.08996 * 109.47146 * 179.97438 * 23 14 13 47 47 H 1.09007 * 109.46970 * 300.00123 * 23 14 13 48 48 H 1.08993 * 109.47218 * 60.00043 * 24 11 10 49 49 H 1.09004 * 109.47172 * 300.00021 * 24 11 10 50 50 H 1.07994 * 119.09847 * 180.24567 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2219 6 6 5.2982 0.3983 -1.3831 7 6 5.7976 -0.1849 -2.5469 8 6 7.1647 -0.3490 -2.6641 9 6 7.7546 -0.9745 -3.9018 10 7 8.1568 0.0817 -4.8401 11 6 8.7370 -0.4921 -6.0616 12 6 9.6769 0.5277 -6.7075 13 6 10.2817 -0.0702 -7.9794 14 6 9.1613 -0.4235 -8.9596 15 6 9.7570 -1.0130 -10.2121 16 1 10.8182 -1.2060 -10.2662 17 6 8.9472 -1.3059 -11.2889 18 7 7.6957 -0.9017 -11.2996 19 14 9.6275 -2.2767 -12.7325 20 1 9.3104 -3.7165 -12.5542 21 1 9.0129 -1.7866 -13.9922 22 1 11.1004 -2.0988 -12.7984 23 6 8.2214 -1.4434 -8.3136 24 6 7.6162 -0.8450 -7.0415 25 7 7.9501 0.0453 -1.6723 26 6 7.4464 0.5977 -0.5873 27 7 6.1490 0.7727 -0.4349 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9786 2.1765 0.0889 35 1 5.1326 -0.5003 -3.3372 36 1 7.0110 -1.6164 -4.3742 37 1 8.6264 -1.5688 -3.6282 38 1 8.7973 0.7280 -4.4042 39 1 9.2963 -1.3931 -5.8095 40 1 10.4753 0.7792 -6.0094 41 1 9.1176 1.4287 -6.9595 42 1 10.9510 0.6566 -8.4399 43 1 10.8412 -0.9709 -7.7270 44 1 8.6019 0.4772 -9.2120 45 1 7.1259 -1.1081 -12.0570 46 1 7.4229 -1.6947 -9.0117 47 1 8.7809 -2.3442 -8.0612 48 1 7.0569 0.0559 -7.2935 49 1 6.9466 -1.5716 -6.5813 50 1 8.1147 0.9116 0.2009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173333995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:36 Heat of formation + Delta-G solvation = -52.521675 kcal Electronic energy + Delta-G solvation = -28084.349286 eV Core-core repulsion = 24111.451135 eV Total energy + Delta-G solvation = -3972.898150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.41666 -39.20815 -38.23292 -37.86375 -35.38502 -33.39733 -32.48235 -31.88556 -30.58993 -29.76744 -28.82331 -26.84254 -26.11252 -24.56889 -24.06067 -23.32745 -22.18359 -21.51463 -20.38694 -18.92658 -18.67439 -17.72212 -17.34011 -16.38204 -16.28121 -16.01062 -15.72507 -15.59996 -15.56316 -15.02220 -14.83299 -14.59080 -14.09237 -14.05286 -13.78156 -13.23344 -13.03836 -12.88938 -12.74647 -12.37485 -12.11525 -12.06852 -11.96277 -11.55460 -11.48029 -11.23960 -11.05300 -10.94810 -10.74370 -10.52676 -10.45736 -10.26777 -10.19380 -10.16547 -9.89450 -9.59055 -9.31306 -9.27808 -8.82117 -8.68277 -8.25578 -8.22643 -5.96183 -3.97239 0.75123 0.94094 2.50145 3.25287 3.33370 3.40849 3.43718 3.53029 3.78519 3.86020 4.36496 4.44562 4.48857 4.58021 4.67010 4.82723 4.90277 4.91168 4.95474 4.99649 5.02396 5.22848 5.26696 5.34151 5.39418 5.39510 5.50525 5.59652 5.62127 5.89700 6.03064 6.15896 6.31611 6.38977 6.44406 6.56534 6.61096 6.66665 6.68435 6.79503 6.91591 6.95196 7.12784 7.20828 7.35673 7.51640 7.53134 7.80886 7.88387 8.06205 8.10477 8.52242 9.07335 9.65740 11.12708 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016161 B = 0.001909 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.186001 B =14661.715574 C =16037.806480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.060 3.940 4 C 0.072 3.928 5 O -0.291 6.291 6 C 0.363 3.637 7 C -0.221 4.221 8 C 0.211 3.789 9 C 0.107 3.893 10 N -0.680 5.680 11 C 0.093 3.907 12 C -0.116 4.116 13 C -0.105 4.105 14 C 0.046 3.954 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.884 3.116 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.103 4.103 24 C -0.103 4.103 25 N -0.539 5.539 26 C 0.333 3.667 27 N -0.582 5.582 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.341 0.659 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 4.115 25.753 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.017 4.017 4 C -0.004 4.004 5 O -0.195 6.195 6 C 0.176 3.824 7 C -0.244 4.244 8 C 0.068 3.932 9 C -0.023 4.023 10 N -0.312 5.312 11 C -0.015 4.015 12 C -0.154 4.154 13 C -0.143 4.143 14 C 0.028 3.972 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.142 4.142 24 C -0.141 4.141 25 N -0.259 5.259 26 C 0.044 3.956 27 N -0.313 5.313 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.159 0.841 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.121 4.222 25.892 28.119 hybrid contribution 0.329 -0.726 -0.809 1.136 sum -9.793 3.496 25.083 27.153 Atomic orbital electron populations 1.22775 0.80619 1.03125 1.00057 1.87966 1.20027 1.27072 1.95439 1.22648 0.91512 0.85885 1.01649 1.22750 0.92897 0.99046 0.85675 1.86310 1.17300 1.75670 1.40194 1.20078 0.84259 0.88356 0.89671 1.21806 0.97144 1.06616 0.98836 1.21478 0.88934 0.89370 0.93437 1.20897 1.00217 0.93566 0.87605 1.60624 1.47690 1.16876 1.05984 1.21634 0.95211 0.96069 0.88583 1.21724 0.97216 0.98542 0.97899 1.21593 0.99425 0.98946 0.94373 1.18671 0.91548 0.95278 0.91695 1.21212 0.94067 1.41567 0.98484 0.92856 1.24961 0.95076 0.95849 0.97956 1.69976 1.06445 1.45044 1.31135 0.86709 0.79183 0.80588 0.82299 1.20799 1.21399 1.19975 1.21565 1.00279 0.98384 0.93957 1.21616 0.96263 1.00350 0.95854 1.68265 1.40742 1.14598 1.02248 1.24629 0.87894 0.89234 0.93810 1.68081 1.05989 1.25223 1.32050 0.93757 0.89380 0.94033 0.90811 0.91918 0.90402 0.89656 0.82762 0.88681 0.92692 0.84119 0.94093 0.93792 0.91700 0.93194 0.93591 0.94886 0.93146 0.90828 0.94773 0.92026 0.94165 0.78518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.58 10.67 -40.09 -0.43 -4.01 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.07 0.60 5.72 37.16 0.21 0.82 16 5 O -0.29 -3.35 10.10 -23.11 -0.23 -3.59 16 6 C 0.36 4.39 7.53 -16.70 -0.13 4.27 16 7 C -0.22 -2.68 9.79 -39.16 -0.38 -3.07 16 8 C 0.21 2.61 6.33 -82.31 -0.52 2.09 16 9 C 0.11 1.33 5.84 -4.98 -0.03 1.31 16 10 N -0.68 -9.63 6.30 -107.99 -0.68 -10.31 16 11 C 0.09 1.53 2.49 -67.71 -0.17 1.36 16 12 C -0.12 -1.98 5.19 -26.73 -0.14 -2.12 16 13 C -0.11 -2.15 5.14 -26.73 -0.14 -2.29 16 14 C 0.05 1.14 1.97 -91.77 -0.18 0.96 16 15 C -0.52 -14.11 8.48 -34.44 -0.29 -14.40 16 16 H 0.05 1.45 7.77 -52.49 -0.41 1.04 16 17 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 18 N -0.89 -25.57 12.16 55.43 0.67 -24.90 16 19 Si 0.88 21.34 29.55 -169.99 -5.02 16.32 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.10 -2.35 5.04 -26.70 -0.13 -2.48 16 24 C -0.10 -1.93 5.43 -26.70 -0.14 -2.07 16 25 N -0.54 -6.52 10.37 -10.87 -0.11 -6.63 16 26 C 0.33 3.45 12.28 -92.18 -1.13 2.32 16 27 N -0.58 -6.57 9.38 -14.64 -0.14 -6.70 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 34 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.15 7.35 -51.93 -0.38 0.77 16 37 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 38 H 0.34 4.65 8.34 -39.29 -0.33 4.32 16 39 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 40 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.90 8.09 -51.93 -0.42 0.48 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 46 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 49 H 0.04 0.69 7.45 -51.93 -0.39 0.31 16 50 H 0.20 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -31.01 405.58 -10.33 -41.34 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.58 Total: 2.08 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.92 Total: -9.72 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.26 Total: -48.53 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.66 Total: -7.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.01 -10.33 -41.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173333995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds