Wall clock time and date at job start Tue Mar 31 2020 18:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00108 * 2 1 4 4 C 1.50700 * 109.47549 * 180.02562 * 3 2 1 5 5 C 1.38351 * 120.34372 * 270.04520 * 4 3 2 6 6 N 1.31933 * 121.07487 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87963 * 359.97438 * 6 5 4 8 8 C 1.39523 * 120.56847 * 359.97438 * 7 6 5 9 9 C 1.47836 * 120.55742 * 180.02562 * 8 7 6 10 10 O 1.21553 * 119.99786 * 179.97438 * 9 8 7 11 11 N 1.34775 * 119.99999 * 359.97438 * 9 8 7 12 12 C 1.46506 * 119.99694 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46965 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47237 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47367 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47367 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47237 * 180.02562 * 16 15 14 18 18 N 1.46496 * 109.46960 * 180.02562 * 17 16 15 19 19 C 1.36932 * 119.99994 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00201 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00268 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47014 * 90.00240 * 23 21 19 25 25 H 1.48504 * 109.47361 * 210.00138 * 23 21 19 26 26 H 1.48500 * 109.47276 * 330.00481 * 23 21 19 27 27 C 1.38357 * 120.34826 * 89.99653 * 4 3 2 28 28 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47501 * 299.99948 * 1 2 3 30 30 H 1.09005 * 109.47592 * 59.99989 * 1 2 3 31 31 H 1.09001 * 109.47292 * 59.99398 * 3 2 1 32 32 H 1.09000 * 109.47031 * 300.00163 * 3 2 1 33 33 H 1.08000 * 119.46743 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.71060 * 179.97438 * 7 6 5 35 35 H 0.96995 * 120.00170 * 0.02562 * 11 9 8 36 36 H 1.09004 * 109.47035 * 299.99496 * 12 11 9 37 37 H 1.08995 * 109.47163 * 60.00083 * 12 11 9 38 38 H 1.08996 * 109.46948 * 299.99874 * 13 12 11 39 39 H 1.08999 * 109.46892 * 59.99579 * 13 12 11 40 40 H 1.09009 * 109.46826 * 300.00027 * 14 13 12 41 41 H 1.09000 * 109.46938 * 59.99481 * 14 13 12 42 42 H 1.09001 * 109.47322 * 300.00093 * 15 14 13 43 43 H 1.09000 * 109.47512 * 59.99836 * 15 14 13 44 44 H 1.09004 * 109.46905 * 299.99546 * 16 15 14 45 45 H 1.08999 * 109.47517 * 59.99973 * 16 15 14 46 46 H 1.08996 * 109.46948 * 299.99881 * 17 16 15 47 47 H 1.08995 * 109.47147 * 60.00038 * 17 16 15 48 48 H 0.97000 * 120.00657 * 359.97438 * 18 17 16 49 49 H 0.97001 * 120.00115 * 179.97438 * 22 21 19 50 50 H 1.07994 * 120.85854 * 0.04271 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2097 1.1302 1.1931 6 7 5.5247 1.0256 1.2093 7 6 6.2318 0.9697 0.0997 8 6 5.6037 1.0194 -1.1452 9 6 6.3976 0.9560 -2.3906 10 8 5.8399 0.9997 -3.4698 11 7 7.7398 0.8498 -2.3296 12 6 8.5266 0.7875 -3.5639 13 6 10.0119 0.6693 -3.2164 14 6 10.8336 0.6036 -4.5054 15 6 12.3189 0.4860 -4.1580 16 6 13.1405 0.4197 -5.4470 17 6 14.6258 0.3015 -5.0996 18 7 15.4125 0.2386 -6.3338 19 6 16.7761 0.1295 -6.2718 20 1 17.2716 0.0893 -5.3130 21 6 17.5215 0.0694 -7.4413 22 7 16.9177 0.1178 -8.6098 23 14 19.3817 -0.0788 -7.3567 24 1 19.7634 -1.5138 -7.3334 25 1 19.9850 0.5747 -8.5459 26 1 19.8755 0.5848 -6.1234 27 6 4.2089 1.1315 -1.1949 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6686 1.1726 2.1268 34 1 7.3071 0.8845 0.1539 35 1 8.1848 0.8145 -1.4685 36 1 8.2199 -0.0810 -4.1468 37 1 8.3604 1.6934 -4.1467 38 1 10.3189 1.5375 -2.6333 39 1 10.1777 -0.2368 -2.6337 40 1 10.5264 -0.2649 -5.0882 41 1 10.6677 1.5095 -5.0885 42 1 12.6257 1.3547 -3.5755 43 1 12.4851 -0.4197 -3.5747 44 1 12.8336 -0.4493 -6.0291 45 1 12.9745 1.3251 -6.0307 46 1 14.9330 1.1701 -4.5172 47 1 14.7915 -0.6042 -4.5161 48 1 14.9675 0.2735 -7.1950 49 1 17.4386 0.0761 -9.4270 50 1 3.6900 1.1734 -2.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178722817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:42 Heat of formation + Delta-G solvation = -58.199471 kcal Electronic energy + Delta-G solvation = -26271.950861 eV Core-core repulsion = 22298.806503 eV Total energy + Delta-G solvation = -3973.144358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24165 -39.61870 -38.32299 -36.87911 -35.49611 -34.10837 -33.58088 -32.78145 -31.73007 -29.96069 -28.13436 -27.15340 -26.17493 -25.10462 -23.76367 -23.25670 -22.26331 -21.38967 -20.65957 -20.57959 -18.38764 -17.59544 -17.19715 -17.05789 -16.95695 -16.31810 -16.20134 -15.98834 -15.63789 -15.43786 -14.68053 -14.56857 -14.39267 -13.99883 -13.72688 -13.63282 -13.46959 -13.37810 -13.06518 -12.95767 -12.75353 -12.53561 -12.36478 -12.09126 -11.75635 -11.38133 -11.20885 -10.92214 -10.78261 -10.73432 -10.66783 -10.46784 -10.40496 -10.37158 -10.25486 -10.00206 -9.93168 -9.80504 -9.62888 -9.46695 -8.83227 -6.87589 -5.72895 -3.01269 0.03079 0.51608 2.33697 2.62793 3.05109 3.44599 3.45861 3.50554 3.52629 3.68127 4.05575 4.12584 4.21622 4.30078 4.41417 4.49528 4.61466 4.65055 4.72458 4.75282 4.79288 4.85715 4.93247 4.98118 5.10514 5.21554 5.33122 5.37375 5.40707 5.51346 5.55692 5.63318 5.68149 5.70806 5.87568 5.92647 5.95288 6.02124 6.13272 6.34230 6.34957 6.42615 6.44345 6.49656 6.93030 6.97071 6.99240 7.21387 7.71359 7.73058 8.46537 9.57176 10.16897 10.51357 11.50306 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.042459 B = 0.001150 C = 0.001128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.305166 B =24332.716193 C =24809.992317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.107 3.893 4 C -0.152 4.152 5 C 0.144 3.856 6 N -0.486 5.486 7 C 0.141 3.859 8 C -0.188 4.188 9 C 0.562 3.438 10 O -0.532 6.532 11 N -0.723 5.723 12 C 0.117 3.883 13 C -0.132 4.132 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.127 4.127 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.005 3.995 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.338 3.356 22.135 41.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.154 4.154 5 C -0.013 4.013 6 N -0.193 5.193 7 C -0.017 4.017 8 C -0.193 4.193 9 C 0.348 3.652 10 O -0.409 6.409 11 N -0.375 5.375 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.154 4.154 15 C -0.151 4.151 16 C -0.165 4.165 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.022 4.022 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -34.998 3.183 22.205 41.570 hybrid contribution 0.530 0.137 -0.697 0.886 sum -34.468 3.320 21.508 40.764 Atomic orbital electron populations 1.22801 0.80341 1.03237 1.00254 1.87976 1.20140 1.26932 1.95471 1.21237 0.88398 0.85608 1.01803 1.20591 0.96061 1.04560 0.94154 1.22949 0.89874 0.90779 0.97702 1.67781 1.07929 1.12854 1.30767 1.23059 1.00374 0.91510 0.86798 1.21009 0.95166 1.08230 0.94905 1.17989 0.82157 0.76694 0.88334 1.90809 1.70912 1.49542 1.29634 1.45952 1.06223 1.74734 1.10582 1.21525 0.90397 1.02861 0.85802 1.21844 0.92738 1.02836 0.99554 1.21516 0.95078 1.02647 0.96188 1.21498 0.93474 1.01878 0.98297 1.21732 0.95931 1.01967 0.96849 1.20656 0.89062 0.97473 0.90358 1.42395 1.03733 1.88916 1.02888 1.19262 0.83141 1.42057 0.92594 0.91226 1.24744 0.97995 1.03115 0.95251 1.69664 1.34356 1.57820 0.96539 0.86186 0.85581 0.77595 0.76826 1.21728 1.21748 1.20763 1.21654 0.92452 0.89027 0.99031 0.89264 0.93764 0.93726 0.91581 0.91714 0.81995 0.82153 0.76450 0.90997 0.90998 0.91151 0.91143 0.91567 0.91581 0.92072 0.92072 0.92084 0.92081 0.96593 0.96593 0.78337 0.93542 0.83281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 11.01 101.05 1.11 1.22 16 2 O -0.39 -2.57 10.69 -35.23 -0.38 -2.95 16 3 C 0.11 0.50 6.08 36.01 0.22 0.72 16 4 C -0.15 -0.97 5.52 -104.54 -0.58 -1.55 16 5 C 0.14 0.91 10.85 -17.47 -0.19 0.72 16 6 N -0.49 -3.76 10.35 -12.91 -0.13 -3.89 16 7 C 0.14 0.95 10.71 -17.13 -0.18 0.77 16 8 C -0.19 -1.51 5.89 -104.82 -0.62 -2.12 16 9 C 0.56 5.45 7.78 -12.33 -0.10 5.35 16 10 O -0.53 -7.13 16.42 5.32 0.09 -7.04 16 11 N -0.72 -5.32 5.51 -61.25 -0.34 -5.65 16 12 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16 13 C -0.13 -0.98 5.33 -26.73 -0.14 -1.12 16 14 C -0.12 -1.13 5.21 -26.74 -0.14 -1.27 16 15 C -0.11 -1.36 5.21 -26.74 -0.14 -1.50 16 16 C -0.13 -2.05 5.33 -26.73 -0.14 -2.20 16 17 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 18 N -0.74 -19.43 5.60 -59.91 -0.34 -19.76 16 19 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.94 13.06 55.49 0.72 -28.21 16 23 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 32 H 0.06 0.24 8.09 -51.93 -0.42 -0.18 16 33 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.16 0.62 6.42 -52.49 -0.34 0.29 16 35 H 0.40 1.82 6.54 -40.82 -0.27 1.55 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.58 7.67 -40.82 -0.31 10.26 16 49 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.15 1.14 7.74 -52.49 -0.41 0.73 16 LS Contribution 419.13 15.07 6.32 6.32 Total: -1.00 -36.20 419.13 -9.11 -45.31 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.47 Total: 2.99 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.56 Total: -4.86 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.08 Total: -57.52 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.29 Total: -9.99 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -36.20 -9.11 -45.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178722817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.887 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds