Wall clock time and date at job start Tue Mar 31 2020 18:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 C 1.50699 * 109.47315 * 265.00709 * 9 8 7 11 11 O 1.21287 * 119.99879 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00270 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47326 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47257 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47257 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47257 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47257 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.47137 * 179.97438 * 18 17 16 20 20 C 1.36940 * 119.99875 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99887 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00097 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99849 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47491 * 89.99177 * 24 22 20 26 26 H 1.48492 * 109.47364 * 209.99505 * 24 22 20 27 27 H 1.48503 * 109.47266 * 329.99694 * 24 22 20 28 28 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 29 29 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 30 30 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 32 32 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 34 34 H 1.09002 * 109.47116 * 25.00398 * 9 8 7 35 35 H 1.08994 * 109.47415 * 145.00430 * 9 8 7 36 36 H 0.97004 * 120.00117 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46940 * 299.99046 * 13 12 10 38 38 H 1.08999 * 109.47634 * 59.99128 * 13 12 10 39 39 H 1.08993 * 109.47184 * 300.00008 * 14 13 12 40 40 H 1.09005 * 109.46664 * 59.99581 * 14 13 12 41 41 H 1.09003 * 109.47267 * 299.99748 * 15 14 13 42 42 H 1.08999 * 109.47375 * 59.99873 * 15 14 13 43 43 H 1.08993 * 109.47184 * 300.00367 * 16 15 14 44 44 H 1.09005 * 109.46664 * 59.99940 * 16 15 14 45 45 H 1.09003 * 109.47267 * 299.99748 * 17 16 15 46 46 H 1.08999 * 109.47375 * 59.99873 * 17 16 15 47 47 H 1.08993 * 109.47184 * 300.00367 * 18 17 16 48 48 H 1.09005 * 109.46664 * 59.99940 * 18 17 16 49 49 H 0.96995 * 120.00510 * 0.02562 * 19 18 17 50 50 H 0.96996 * 119.99862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 6 4.4642 -0.4258 -1.4168 11 8 3.9530 0.1804 -2.3346 12 7 5.1927 -1.5326 -1.6630 13 6 5.3685 -2.0026 -3.0394 14 6 6.2306 -3.2667 -3.0405 15 6 6.4137 -3.7579 -4.4778 16 6 7.2763 -5.0215 -4.4790 17 6 7.4589 -5.5131 -5.9163 18 6 8.3221 -6.7764 -5.9175 19 7 8.4964 -7.2474 -7.2937 20 6 9.2371 -8.3716 -7.5440 21 1 9.6932 -8.9107 -6.7268 22 6 9.4027 -8.8177 -8.8480 23 7 8.8473 -8.1604 -9.8439 24 14 10.4138 -10.3508 -9.1894 25 1 9.5303 -11.5440 -9.1568 26 1 11.0455 -10.2391 -10.5286 27 1 11.4695 -10.4883 -8.1541 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2244 2.3567 0.0003 32 1 1.4006 4.5174 0.0011 33 1 5.0999 2.6329 0.0011 34 1 5.2581 0.2825 0.4331 35 1 3.7934 -0.7169 0.5881 36 1 5.6012 -2.0177 -0.9290 37 1 4.3943 -2.2266 -3.4740 38 1 5.8595 -1.2278 -3.6281 39 1 7.2047 -3.0425 -2.6059 40 1 5.7398 -4.0417 -2.4517 41 1 5.4394 -3.9823 -4.9120 42 1 6.9042 -2.9830 -5.0669 43 1 8.2505 -4.7968 -4.0450 44 1 6.7861 -5.7966 -3.8898 45 1 6.4845 -5.7381 -6.3499 46 1 7.9488 -4.7382 -6.5059 47 1 9.2964 -6.5511 -5.4840 48 1 7.8325 -7.5515 -5.3278 49 1 8.0871 -6.7630 -8.0277 50 1 8.9627 -8.4722 -10.7551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178810877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:33 Heat of formation + Delta-G solvation = -54.488662 kcal Electronic energy + Delta-G solvation = -26813.668146 eV Core-core repulsion = 22840.684700 eV Total energy + Delta-G solvation = -3972.983445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28094 -39.75664 -38.64755 -36.84002 -35.39937 -33.95190 -33.78074 -31.90284 -31.66725 -30.12678 -28.68885 -27.99044 -26.64942 -24.16902 -23.38027 -23.01228 -22.15645 -21.31640 -20.64588 -20.42615 -18.83435 -17.65345 -17.38740 -16.96012 -16.49570 -16.28105 -16.23951 -15.52298 -15.41444 -15.22026 -14.73425 -14.64028 -14.35657 -14.25217 -13.84972 -13.62429 -13.44728 -13.36313 -13.13017 -12.78008 -12.67902 -12.37362 -12.33645 -12.08879 -11.71230 -11.67179 -11.34625 -11.18054 -10.90721 -10.72576 -10.70952 -10.43395 -10.24842 -10.22266 -9.96602 -9.92960 -9.63326 -9.57200 -9.35132 -9.17698 -8.83279 -6.87556 -5.72910 -3.01302 0.62226 0.91664 2.37374 2.60469 2.86025 3.42135 3.45672 3.50317 3.52473 3.95194 4.14914 4.28889 4.36389 4.52243 4.57065 4.59063 4.61404 4.67030 4.74706 4.76965 4.84550 4.95742 4.98232 5.08238 5.24346 5.24745 5.39780 5.41269 5.45201 5.57116 5.58378 5.65467 5.71322 5.76008 5.95622 5.97675 6.08540 6.14670 6.15403 6.35305 6.35857 6.43095 6.50112 6.66390 6.93271 6.97310 7.18256 7.58743 7.72969 7.94442 8.46502 9.57090 10.16911 10.51398 11.50251 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.001233 C = 0.001220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.725853 B =22708.948153 C =22951.574734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.183 3.817 4 C -0.262 4.262 5 C 0.135 3.865 6 N -0.507 5.507 7 C 0.145 3.855 8 C -0.151 4.151 9 C -0.089 4.089 10 C 0.515 3.485 11 O -0.533 6.533 12 N -0.732 5.732 13 C 0.118 3.882 14 C -0.130 4.130 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.401 0.599 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.892 22.543 27.874 39.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.021 4.021 6 N -0.219 5.219 7 C -0.011 4.011 8 C -0.155 4.155 9 C -0.130 4.130 10 C 0.301 3.699 11 O -0.409 6.409 12 N -0.384 5.384 13 C -0.005 4.005 14 C -0.168 4.168 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.025 3.975 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.583 5.583 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.175 0.825 33 H 0.178 0.822 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.235 0.765 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.689 23.418 27.218 39.595 hybrid contribution -0.154 -1.724 -0.238 1.747 sum -16.843 21.694 26.980 38.500 Atomic orbital electron populations 1.23163 0.77547 1.04569 1.01678 1.86056 1.22050 1.26227 1.87448 1.19107 0.91821 0.84739 0.91374 1.22196 1.01557 0.93168 1.11374 1.22566 0.90307 0.96994 0.92264 1.67738 1.07132 1.31864 1.15183 1.22526 1.00245 0.86119 0.92162 1.19696 0.90812 0.96354 1.08608 1.20395 1.01148 0.96200 0.95229 1.20494 0.78103 0.80270 0.91064 1.90733 1.47606 1.56200 1.46370 1.46032 1.53976 1.28530 1.09850 1.21434 1.00400 0.96259 0.82454 1.21823 0.99870 0.96185 0.98923 1.21519 1.00822 0.98123 0.94993 1.21497 0.99516 0.96382 0.97712 1.21731 1.00629 0.98462 0.95651 1.20657 0.95754 0.92725 0.88413 1.42397 1.62346 1.31202 1.01984 1.19264 1.23685 1.01930 0.92180 0.91221 1.24749 1.01313 0.99470 0.95618 1.69665 1.49002 1.41064 0.98614 0.86177 0.79740 0.82976 0.77242 1.21740 1.21755 1.20776 0.92306 0.92187 0.87721 0.84317 0.82481 0.82236 0.87544 0.87488 0.76549 0.91496 0.91418 0.91259 0.91305 0.91671 0.91640 0.92089 0.92119 0.92104 0.92091 0.96584 0.96607 0.78336 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.49 9.77 -18.94 -0.18 -2.68 16 3 C 0.18 1.60 6.70 -38.82 -0.26 1.34 16 4 C -0.26 -1.91 9.11 -39.30 -0.36 -2.27 16 5 C 0.14 1.04 11.17 -17.60 -0.20 0.85 16 6 N -0.51 -4.90 10.36 -13.33 -0.14 -5.03 16 7 C 0.15 1.25 10.84 -17.59 -0.19 1.06 16 8 C -0.15 -1.29 4.40 -104.34 -0.46 -1.75 16 9 C -0.09 -0.56 5.61 -29.04 -0.16 -0.73 16 10 C 0.51 4.89 7.82 -10.99 -0.09 4.81 16 11 O -0.53 -7.55 16.03 5.55 0.09 -7.46 16 12 N -0.73 -5.43 5.56 -60.29 -0.33 -5.77 16 13 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 14 C -0.13 -1.02 5.33 -26.73 -0.14 -1.16 16 15 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 16 C -0.11 -1.38 5.21 -26.73 -0.14 -1.52 16 17 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 18 C 0.15 3.17 6.26 -4.04 -0.03 3.14 16 19 N -0.74 -19.48 5.60 -59.91 -0.34 -19.82 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -28.96 13.06 55.49 0.72 -28.24 16 24 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.06 0.16 7.71 -51.92 -0.40 -0.24 16 29 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.14 0.64 6.47 -52.49 -0.34 0.30 16 32 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.11 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.11 0.54 7.77 -51.93 -0.40 0.14 16 36 H 0.40 1.75 8.47 -40.82 -0.35 1.40 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 10.61 7.67 -40.82 -0.31 10.30 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 417.22 15.07 6.29 6.29 Total: -1.00 -37.43 417.22 -9.00 -46.44 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -8.51 Total: 3.81 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.58 Total: -5.30 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.08 Total: -58.86 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.10 Total: -10.14 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.43 -9.00 -46.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178810877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.051 kcal (2) G-P(sol) polarization free energy of solvation -37.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds