Wall clock time and date at job start Tue Mar 31 2020 18:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 C 1.50699 * 109.47315 * 265.00709 * 9 8 7 11 11 O 1.21287 * 119.99879 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00270 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00164 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47326 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47257 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.47257 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47257 * 179.97438 * 16 15 14 18 18 C 1.53002 * 109.47257 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.47137 * 179.97438 * 18 17 16 20 20 C 1.36940 * 119.99875 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99887 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00097 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99849 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47491 * 89.99177 * 24 22 20 26 26 H 1.48492 * 109.47364 * 209.99505 * 24 22 20 27 27 H 1.48503 * 109.47266 * 329.99694 * 24 22 20 28 28 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 29 29 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 30 30 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 32 32 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 34 34 H 1.09002 * 109.47116 * 25.00398 * 9 8 7 35 35 H 1.08994 * 109.47415 * 145.00430 * 9 8 7 36 36 H 0.97004 * 120.00117 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.46940 * 299.99046 * 13 12 10 38 38 H 1.08999 * 109.47634 * 59.99128 * 13 12 10 39 39 H 1.08993 * 109.47184 * 300.00008 * 14 13 12 40 40 H 1.09005 * 109.46664 * 59.99581 * 14 13 12 41 41 H 1.09003 * 109.47267 * 299.99748 * 15 14 13 42 42 H 1.08999 * 109.47375 * 59.99873 * 15 14 13 43 43 H 1.08993 * 109.47184 * 300.00367 * 16 15 14 44 44 H 1.09005 * 109.46664 * 59.99940 * 16 15 14 45 45 H 1.09003 * 109.47267 * 299.99748 * 17 16 15 46 46 H 1.08999 * 109.47375 * 59.99873 * 17 16 15 47 47 H 1.08993 * 109.47184 * 300.00367 * 18 17 16 48 48 H 1.09005 * 109.46664 * 59.99940 * 18 17 16 49 49 H 0.96995 * 120.00510 * 0.02562 * 19 18 17 50 50 H 0.96996 * 119.99862 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 6 4.4642 -0.4258 -1.4168 11 8 3.9530 0.1804 -2.3346 12 7 5.1927 -1.5326 -1.6630 13 6 5.3685 -2.0026 -3.0394 14 6 6.2306 -3.2667 -3.0405 15 6 6.4137 -3.7579 -4.4778 16 6 7.2763 -5.0215 -4.4790 17 6 7.4589 -5.5131 -5.9163 18 6 8.3221 -6.7764 -5.9175 19 7 8.4964 -7.2474 -7.2937 20 6 9.2371 -8.3716 -7.5440 21 1 9.6932 -8.9107 -6.7268 22 6 9.4027 -8.8177 -8.8480 23 7 8.8473 -8.1604 -9.8439 24 14 10.4138 -10.3508 -9.1894 25 1 9.5303 -11.5440 -9.1568 26 1 11.0455 -10.2391 -10.5286 27 1 11.4695 -10.4883 -8.1541 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2244 2.3567 0.0003 32 1 1.4006 4.5174 0.0011 33 1 5.0999 2.6329 0.0011 34 1 5.2581 0.2825 0.4331 35 1 3.7934 -0.7169 0.5881 36 1 5.6012 -2.0177 -0.9290 37 1 4.3943 -2.2266 -3.4740 38 1 5.8595 -1.2278 -3.6281 39 1 7.2047 -3.0425 -2.6059 40 1 5.7398 -4.0417 -2.4517 41 1 5.4394 -3.9823 -4.9120 42 1 6.9042 -2.9830 -5.0669 43 1 8.2505 -4.7968 -4.0450 44 1 6.7861 -5.7966 -3.8898 45 1 6.4845 -5.7381 -6.3499 46 1 7.9488 -4.7382 -6.5059 47 1 9.2964 -6.5511 -5.4840 48 1 7.8325 -7.5515 -5.3278 49 1 8.0871 -6.7630 -8.0277 50 1 8.9627 -8.4722 -10.7551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178810877.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:32 Heat of formation + Delta-G solvation = -80.746839 kcal Electronic energy + Delta-G solvation = -26814.806786 eV Core-core repulsion = 22840.684700 eV Total energy + Delta-G solvation = -3974.122085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83178 -40.47094 -39.17146 -37.91278 -36.74218 -35.28071 -34.40079 -33.46956 -32.21354 -31.57687 -29.43422 -28.47332 -27.82076 -25.72129 -24.01887 -23.91055 -23.21036 -22.20136 -21.99738 -21.16820 -19.34128 -19.11877 -18.19931 -18.01756 -17.17904 -17.04929 -16.75593 -16.66135 -16.32063 -15.94937 -15.89219 -15.38744 -15.36797 -15.24335 -15.17958 -14.85842 -14.38592 -14.19489 -14.15318 -13.87069 -13.41887 -13.27818 -13.03417 -12.98365 -12.82719 -12.61664 -12.50619 -12.38696 -12.18451 -12.13517 -12.00796 -11.80216 -11.79532 -11.47079 -11.34234 -10.98603 -10.93626 -10.53749 -10.12752 -10.07243 -9.74416 -9.01791 -7.96588 -5.26288 0.07011 0.33653 1.46672 1.49227 1.57853 1.67589 2.15779 2.23580 2.55667 2.85024 3.36941 3.46431 3.64588 3.73463 3.82060 3.87577 3.97658 4.02162 4.09435 4.20463 4.25260 4.30417 4.31473 4.32816 4.36600 4.42577 4.59683 4.63743 4.64927 4.67100 4.75139 4.79409 4.87188 4.94585 4.98642 5.00052 5.06765 5.07119 5.16647 5.29495 5.36134 5.46740 5.49424 5.53884 5.56688 5.56847 6.17379 6.26076 6.59995 7.01929 7.30450 7.31427 8.08652 8.31431 9.27292 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.032039 B = 0.001233 C = 0.001220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.725853 B =22708.948153 C =22951.574734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.165 3.835 4 C -0.264 4.264 5 C 0.123 3.877 6 N -0.536 5.536 7 C 0.132 3.868 8 C -0.166 4.166 9 C -0.081 4.081 10 C 0.512 3.488 11 O -0.587 6.587 12 N -0.718 5.718 13 C 0.121 3.879 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.103 4.103 17 C -0.117 4.117 18 C 0.148 3.852 19 N -0.752 5.752 20 C -0.251 4.251 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.978 3.022 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.268 1.268 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.162 0.838 32 H 0.182 0.818 33 H 0.177 0.823 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.418 0.582 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.053 0.947 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.372 0.628 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 21.991 30.140 40.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.111 3.889 4 C -0.285 4.285 5 C -0.032 4.032 6 N -0.248 5.248 7 C -0.024 4.024 8 C -0.170 4.170 9 C -0.121 4.121 10 C 0.299 3.701 11 O -0.467 6.467 12 N -0.371 5.371 13 C -0.003 4.003 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.141 4.141 17 C -0.155 4.155 18 C 0.022 3.978 19 N -0.394 5.394 20 C -0.383 4.383 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.193 1.193 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.137 0.863 31 H 0.180 0.820 32 H 0.199 0.801 33 H 0.194 0.806 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.474 22.841 29.564 40.831 hybrid contribution -0.274 -1.541 -0.911 1.811 sum -16.747 21.300 28.653 39.435 Atomic orbital electron populations 1.23415 0.75946 1.05877 1.02523 1.86023 1.23824 1.26164 1.87441 1.19419 0.92401 0.85391 0.91644 1.22477 1.02796 0.92652 1.10575 1.23026 0.90089 0.98259 0.91855 1.67742 1.08175 1.32653 1.16225 1.22873 1.01173 0.86153 0.92196 1.19978 0.91327 0.97103 1.08556 1.20447 1.02767 0.95678 0.93224 1.21071 0.77199 0.79983 0.91816 1.90711 1.49884 1.57907 1.48185 1.45909 1.53242 1.28012 1.09898 1.21284 0.99568 0.96369 0.83050 1.21682 1.00523 0.95741 0.97431 1.21456 1.00048 0.97057 0.96671 1.21413 1.00618 0.97377 0.94683 1.21645 0.99093 0.96230 0.98565 1.20881 0.96738 0.94579 0.85628 1.42674 1.62047 1.30785 1.03915 1.19706 1.23446 1.02579 0.92568 0.90563 1.25643 1.02975 1.02877 0.95475 1.69830 1.50721 1.42899 0.98776 0.85079 0.78338 0.78984 0.76995 1.21214 1.22027 1.19255 0.90580 0.92180 0.86280 0.82016 0.80139 0.80598 0.84206 0.85987 0.74440 0.93167 0.92857 0.89761 0.89953 0.92174 0.92085 0.91126 0.91192 0.92835 0.92812 0.96225 0.96243 0.79615 0.93948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.84 113.37 1.12 1.24 16 2 O -0.32 -5.02 9.77 -90.68 -0.89 -5.91 16 3 C 0.17 2.81 6.70 22.76 0.15 2.97 16 4 C -0.26 -3.68 9.11 22.45 0.20 -3.48 16 5 C 0.12 1.86 11.17 84.60 0.95 2.80 16 6 N -0.54 -10.30 10.36 -196.08 -2.03 -12.33 16 7 C 0.13 2.23 10.84 84.62 0.92 3.15 16 8 C -0.17 -2.74 4.40 -19.68 -0.09 -2.83 16 9 C -0.08 -0.89 5.61 29.10 0.16 -0.73 16 10 C 0.51 9.29 7.82 87.66 0.69 9.97 16 11 O -0.59 -16.92 16.03 -3.05 -0.05 -16.97 16 12 N -0.72 -9.45 5.56 -463.06 -2.57 -12.02 16 13 C 0.12 2.02 5.67 86.38 0.49 2.51 16 14 C -0.12 -1.54 5.33 30.59 0.16 -1.38 16 15 C -0.11 -2.14 5.21 30.59 0.16 -1.98 16 16 C -0.10 -2.31 5.21 30.59 0.16 -2.15 16 17 C -0.12 -3.76 5.33 30.59 0.16 -3.60 16 18 C 0.15 6.06 6.26 86.38 0.54 6.60 16 19 N -0.75 -40.06 5.60 -343.46 -1.92 -41.99 16 20 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 22 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 23 N -0.97 -60.97 13.06 21.65 0.28 -60.69 16 24 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.08 0.30 7.71 -2.38 -0.02 0.28 16 29 H 0.06 0.45 7.71 -2.39 -0.02 0.43 16 30 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.16 1.28 6.47 -2.91 -0.02 1.26 16 32 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.14 0.54 8.06 -2.39 -0.02 0.52 16 35 H 0.12 0.98 7.77 -2.39 -0.02 0.96 16 36 H 0.42 2.46 8.47 -92.71 -0.79 1.68 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.37 21.05 7.67 -92.71 -0.71 20.34 16 50 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -82.12 417.22 1.36 -80.76 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.56 Total: 25.06 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 7.08 Total: -4.70 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -6.25 Total: -127.03 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.93 Total: -22.88 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -82.12 1.36 -80.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178810877.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.010 kcal (2) G-P(sol) polarization free energy of solvation -82.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds