Wall clock time and date at job start Tue Mar 31 2020 18:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00095 * 2 1 4 4 C 1.50701 * 109.47196 * 293.95273 * 3 2 1 5 5 O 1.21294 * 119.99903 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99702 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00344 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99789 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99730 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47208 * 90.00319 * 11 9 7 13 13 H 1.48498 * 109.47297 * 210.00320 * 11 9 7 14 14 H 1.48501 * 109.47376 * 330.00370 * 11 9 7 15 15 C 1.46899 * 111.00181 * 123.95431 * 2 1 3 16 16 H 1.09000 * 110.88498 * 297.72963 * 15 2 1 17 17 C 1.55161 * 111.03418 * 61.63608 * 15 2 1 18 18 C 1.54325 * 102.94157 * 153.59226 * 17 15 2 19 19 N 1.47023 * 107.27235 * 337.80323 * 18 17 15 20 20 C 1.34778 * 125.64925 * 178.90226 * 19 18 17 21 21 O 1.21274 * 119.99776 * 180.02562 * 20 19 18 22 22 C 1.50700 * 119.99730 * 0.02936 * 20 19 18 23 23 C 1.52996 * 109.46788 * 179.97438 * 22 20 19 24 24 H 1.09002 * 110.34965 * 304.16991 * 23 22 20 25 25 C 1.51110 * 110.38497 * 66.45721 * 23 22 20 26 26 C 1.30527 * 111.10340 * 135.24604 * 25 23 22 27 27 C 1.51097 * 111.10428 * 359.97438 * 26 25 23 28 28 C 1.54631 * 104.72640 * 343.56179 * 27 26 25 29 29 C 1.47424 * 108.70063 * 358.94217 * 19 18 17 30 30 H 1.09001 * 109.46942 * 301.83431 * 1 2 3 31 31 H 1.09004 * 109.46873 * 61.83218 * 1 2 3 32 32 H 1.08996 * 109.47067 * 181.82907 * 1 2 3 33 33 H 1.09002 * 109.46929 * 53.95223 * 3 2 1 34 34 H 1.09007 * 109.47197 * 173.95287 * 3 2 1 35 35 H 0.96994 * 120.00007 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99869 * 179.97438 * 10 9 7 37 37 H 1.08996 * 110.72107 * 35.22630 * 17 15 2 38 38 H 1.08999 * 110.71742 * 271.95431 * 17 15 2 39 39 H 1.08994 * 109.87994 * 218.38544 * 18 17 15 40 40 H 1.09000 * 109.88283 * 97.22290 * 18 17 15 41 41 H 1.08999 * 109.47016 * 299.99780 * 22 20 19 42 42 H 1.09001 * 109.47200 * 60.00278 * 22 20 19 43 43 H 1.07996 * 124.44543 * 315.26681 * 25 23 22 44 44 H 1.07997 * 124.44618 * 180.02562 * 26 25 23 45 45 H 1.09001 * 110.38865 * 102.37528 * 27 26 25 46 46 H 1.09003 * 110.38224 * 224.63604 * 27 26 25 47 47 H 1.08998 * 111.03727 * 266.60186 * 28 27 26 48 48 H 1.09007 * 111.03109 * 142.66734 * 28 27 26 49 49 H 1.09005 * 110.36666 * 142.96313 * 29 19 18 50 50 H 1.08995 * 110.37069 * 265.17937 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4456 -2.1408 6 7 2.0181 3.3202 -1.5233 7 6 1.6915 3.9351 -2.7043 8 1 1.1292 3.3992 -3.4547 9 6 2.0849 5.2474 -2.9363 10 7 1.7723 5.8366 -4.0686 11 14 3.0580 6.1740 -1.6388 12 1 4.5105 5.9611 -1.8634 13 1 2.7503 7.6239 -1.7307 14 1 2.6871 5.6738 -0.2907 15 6 1.9955 -0.7660 1.1376 16 1 1.6924 -0.3157 2.0828 17 6 1.5528 -2.2511 1.0616 18 6 2.6687 -2.9845 1.8352 19 7 3.8548 -2.1157 1.8186 20 6 5.0366 -2.3886 2.4062 21 8 5.9502 -1.5949 2.3279 22 6 5.2227 -3.6800 3.1604 23 6 6.6436 -3.7408 3.7244 24 1 7.3744 -3.6183 2.9250 25 6 6.8363 -2.6781 4.7812 26 6 7.4494 -3.1613 5.8273 27 6 7.7672 -4.6269 5.6429 28 6 6.8710 -5.0784 4.4665 29 6 3.5368 -0.8963 1.0535 30 1 -0.3633 0.5421 0.8731 31 1 -0.3633 0.4851 -0.9060 32 1 -0.3633 -1.0271 0.0328 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1083 35 1 2.5234 3.8013 -0.8495 36 1 2.0466 6.7529 -4.2304 37 1 1.5147 -2.5897 0.0262 38 1 0.5886 -2.3916 1.5501 39 1 2.8966 -3.9322 1.3475 40 1 2.3528 -3.1608 2.8634 41 1 4.5042 -3.7297 3.9785 42 1 5.0638 -4.5210 2.4855 43 1 6.5094 -1.6534 4.6839 44 1 7.6963 -2.5889 6.7092 45 1 8.8195 -4.7585 5.3909 46 1 7.5212 -5.1853 6.5462 47 1 5.9291 -5.4909 4.8281 48 1 7.3915 -5.7948 3.8307 49 1 4.0161 -0.0284 1.5066 50 1 3.8539 -1.0056 0.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188784010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:38 Heat of formation + Delta-G solvation = -35.579219 kcal Electronic energy + Delta-G solvation = -28827.784334 eV Core-core repulsion = 24855.620863 eV Total energy + Delta-G solvation = -3972.163470 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54494 -39.29319 -38.51923 -37.58761 -35.55186 -33.88074 -32.12813 -31.67739 -30.89687 -29.30926 -29.05065 -28.04741 -25.98195 -24.86205 -23.65378 -22.85227 -20.87583 -20.32186 -19.70127 -19.29629 -18.77386 -18.22381 -17.35221 -16.93776 -16.23310 -15.98433 -15.59557 -15.50242 -14.99331 -14.76502 -14.53992 -14.49360 -14.01360 -13.64810 -13.41016 -13.12213 -13.04929 -12.94715 -12.58208 -12.43029 -12.26414 -12.17472 -12.17288 -12.08403 -11.80098 -11.58861 -11.52571 -11.45003 -11.38119 -11.17579 -11.07480 -11.01850 -10.85703 -10.58334 -9.97063 -9.94107 -9.53431 -9.16552 -8.83488 -8.61541 -8.18009 -8.02196 -6.30507 -3.81768 2.04788 2.47194 2.71180 3.03865 3.08899 3.16657 3.73203 3.84432 4.06573 4.11388 4.28302 4.31073 4.42451 4.50885 4.64682 4.72753 4.81830 4.91233 5.02762 5.05849 5.07736 5.12806 5.21112 5.22837 5.27636 5.33088 5.45943 5.47057 5.53162 5.56920 5.60243 5.61427 5.69939 5.77818 5.80386 5.82344 5.84731 5.91705 5.94697 6.00502 6.06415 6.33097 6.46419 6.65202 7.06728 7.21924 7.33021 7.58817 7.99508 8.14954 8.60641 8.95775 9.43112 9.83665 10.82487 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002242 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.495731 B =12486.143195 C =13860.429386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.506 5.506 3 C 0.039 3.961 4 C 0.454 3.546 5 O -0.559 6.559 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.879 3.121 12 H -0.270 1.270 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.068 3.932 16 H 0.055 0.945 17 C -0.123 4.123 18 C 0.103 3.897 19 N -0.620 5.620 20 C 0.527 3.473 21 O -0.536 6.536 22 C -0.126 4.126 23 C -0.055 4.055 24 H 0.090 0.910 25 C -0.141 4.141 26 C -0.183 4.183 27 C -0.099 4.099 28 C -0.122 4.122 29 C 0.112 3.888 30 H 0.016 0.984 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 -21.850 21.270 31.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.231 5.231 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.230 5.230 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.042 4.042 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.355 5.355 20 C 0.316 3.684 21 O -0.412 6.412 22 C -0.166 4.166 23 C -0.074 4.074 24 H 0.108 0.892 25 C -0.158 4.158 26 C -0.201 4.201 27 C -0.136 4.136 28 C -0.159 4.159 29 C -0.011 4.011 30 H 0.035 0.965 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.203 0.797 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.011 -21.894 20.107 30.328 hybrid contribution 0.435 1.480 1.687 2.286 sum 6.447 -20.415 21.794 30.550 Atomic orbital electron populations 1.22570 0.86001 1.01547 1.02469 1.61612 1.09020 1.12606 1.39838 1.21974 1.00958 0.89121 0.97175 1.19571 0.85163 0.82453 0.88875 1.90520 1.42688 1.64112 1.46789 1.42211 1.50972 1.11918 1.17895 1.19419 1.33819 0.96274 0.93742 0.86237 1.25036 0.97859 0.96525 0.96744 1.69623 1.45652 1.13607 1.23219 0.86686 0.81004 0.80462 0.81328 1.19543 1.20193 1.19540 1.22788 0.94041 0.94388 0.92936 0.92763 1.22704 0.97408 0.93868 1.02133 1.22061 0.85267 0.94182 1.00553 1.48492 1.12287 1.21093 1.53642 1.20382 0.80666 0.88669 0.78700 1.90724 1.40002 1.49823 1.60680 1.21693 0.98998 0.95608 1.00330 1.20851 0.95467 0.93476 0.97559 0.89160 1.23326 0.98929 0.99346 0.94245 1.23251 1.01215 0.96692 0.98958 1.21333 0.99903 0.94035 0.98347 1.22558 1.00110 0.96394 0.96861 1.22256 0.94273 0.87439 0.97146 0.96540 0.88207 0.91861 0.93207 0.89192 0.79720 0.91624 0.88920 0.90010 0.91044 0.91394 0.88866 0.88765 0.85683 0.86090 0.90875 0.91363 0.90891 0.90784 0.90512 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.05 60.06 0.54 0.86 16 2 N -0.51 -7.63 4.40 -233.74 -1.03 -8.66 16 3 C 0.04 0.65 5.33 -4.98 -0.03 0.62 16 4 C 0.45 10.19 7.52 -10.98 -0.08 10.11 16 5 O -0.56 -14.59 13.88 5.55 0.08 -14.51 16 6 N -0.59 -14.09 5.09 -10.96 -0.06 -14.14 16 7 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.46 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 10 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 11 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 15 C 0.07 0.78 2.71 -65.56 -0.18 0.61 16 16 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -1.07 5.33 -24.89 -0.13 -1.20 16 18 C 0.10 0.76 6.49 -3.06 -0.02 0.74 16 19 N -0.62 -6.57 3.33 -170.52 -0.57 -7.14 16 20 C 0.53 6.01 7.61 -10.98 -0.08 5.93 16 21 O -0.54 -8.19 14.94 5.56 0.08 -8.10 16 22 C -0.13 -0.96 4.31 -27.88 -0.12 -1.08 16 23 C -0.06 -0.46 2.55 -90.71 -0.23 -0.69 16 24 H 0.09 0.90 8.01 -51.93 -0.42 0.48 16 25 C -0.14 -1.35 9.19 -35.69 -0.33 -1.68 16 26 C -0.18 -1.50 10.77 -35.70 -0.38 -1.88 16 27 C -0.10 -0.65 6.81 -26.83 -0.18 -0.83 16 28 C -0.12 -0.75 6.71 -25.01 -0.17 -0.91 16 29 C 0.11 1.38 5.35 -2.53 -0.01 1.37 16 30 H 0.02 0.22 8.13 -51.93 -0.42 -0.21 16 31 H 0.10 1.83 5.91 -51.93 -0.31 1.52 16 32 H 0.06 0.76 6.92 -51.93 -0.36 0.40 16 33 H 0.05 0.75 8.11 -51.93 -0.42 0.32 16 34 H 0.09 1.37 6.70 -51.92 -0.35 1.02 16 35 H 0.37 7.83 5.76 -40.82 -0.24 7.60 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.57 7.97 -51.93 -0.41 0.16 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.41 7.31 -52.49 -0.38 1.02 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.37 7.91 -51.93 -0.41 -0.04 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 1.02 7.68 -51.93 -0.40 0.62 16 50 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -34.03 395.03 -9.45 -43.48 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.32 Total: 9.00 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.65 Total: 4.27 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.88 Total: -54.98 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.03 -9.45 -43.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188784010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.902 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds