Wall clock time and date at job start Tue Mar 31 2020 18:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00095 * 2 1 4 4 C 1.50701 * 109.47196 * 293.95273 * 3 2 1 5 5 O 1.21294 * 119.99903 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.37097 * 119.99702 * 180.02562 * 6 4 3 8 8 H 1.08004 * 120.00344 * 359.97438 * 7 6 4 9 9 C 1.38953 * 119.99789 * 180.02562 * 7 6 4 10 10 N 1.31411 * 119.99730 * 179.97438 * 9 7 6 11 11 Si 1.86792 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48508 * 109.47208 * 90.00319 * 11 9 7 13 13 H 1.48498 * 109.47297 * 210.00320 * 11 9 7 14 14 H 1.48501 * 109.47376 * 330.00370 * 11 9 7 15 15 C 1.46899 * 111.00181 * 123.95431 * 2 1 3 16 16 H 1.09000 * 110.88498 * 297.72963 * 15 2 1 17 17 C 1.55161 * 111.03418 * 61.63608 * 15 2 1 18 18 C 1.54325 * 102.94157 * 153.59226 * 17 15 2 19 19 N 1.47023 * 107.27235 * 337.80323 * 18 17 15 20 20 C 1.34778 * 125.64925 * 178.90226 * 19 18 17 21 21 O 1.21274 * 119.99776 * 180.02562 * 20 19 18 22 22 C 1.50700 * 119.99730 * 0.02936 * 20 19 18 23 23 C 1.52996 * 109.46788 * 179.97438 * 22 20 19 24 24 H 1.09002 * 110.34965 * 304.16991 * 23 22 20 25 25 C 1.51110 * 110.38497 * 66.45721 * 23 22 20 26 26 C 1.30527 * 111.10340 * 135.24604 * 25 23 22 27 27 C 1.51097 * 111.10428 * 359.97438 * 26 25 23 28 28 C 1.54631 * 104.72640 * 343.56179 * 27 26 25 29 29 C 1.47424 * 108.70063 * 358.94217 * 19 18 17 30 30 H 1.09001 * 109.46942 * 301.83431 * 1 2 3 31 31 H 1.09004 * 109.46873 * 61.83218 * 1 2 3 32 32 H 1.08996 * 109.47067 * 181.82907 * 1 2 3 33 33 H 1.09002 * 109.46929 * 53.95223 * 3 2 1 34 34 H 1.09007 * 109.47197 * 173.95287 * 3 2 1 35 35 H 0.96994 * 120.00007 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99869 * 179.97438 * 10 9 7 37 37 H 1.08996 * 110.72107 * 35.22630 * 17 15 2 38 38 H 1.08999 * 110.71742 * 271.95431 * 17 15 2 39 39 H 1.08994 * 109.87994 * 218.38544 * 18 17 15 40 40 H 1.09000 * 109.88283 * 97.22290 * 18 17 15 41 41 H 1.08999 * 109.47016 * 299.99780 * 22 20 19 42 42 H 1.09001 * 109.47200 * 60.00278 * 22 20 19 43 43 H 1.07996 * 124.44543 * 315.26681 * 25 23 22 44 44 H 1.07997 * 124.44618 * 180.02562 * 26 25 23 45 45 H 1.09001 * 110.38865 * 102.37528 * 27 26 25 46 46 H 1.09003 * 110.38224 * 224.63604 * 27 26 25 47 47 H 1.08998 * 111.03727 * 266.60186 * 28 27 26 48 48 H 1.09007 * 111.03109 * 142.66734 * 28 27 26 49 49 H 1.09005 * 110.36666 * 142.96313 * 29 19 18 50 50 H 1.08995 * 110.37069 * 265.17937 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 8 1.0047 1.4456 -2.1408 6 7 2.0181 3.3202 -1.5233 7 6 1.6915 3.9351 -2.7043 8 1 1.1292 3.3992 -3.4547 9 6 2.0849 5.2474 -2.9363 10 7 1.7723 5.8366 -4.0686 11 14 3.0580 6.1740 -1.6388 12 1 4.5105 5.9611 -1.8634 13 1 2.7503 7.6239 -1.7307 14 1 2.6871 5.6738 -0.2907 15 6 1.9955 -0.7660 1.1376 16 1 1.6924 -0.3157 2.0828 17 6 1.5528 -2.2511 1.0616 18 6 2.6687 -2.9845 1.8352 19 7 3.8548 -2.1157 1.8186 20 6 5.0366 -2.3886 2.4062 21 8 5.9502 -1.5949 2.3279 22 6 5.2227 -3.6800 3.1604 23 6 6.6436 -3.7408 3.7244 24 1 7.3744 -3.6183 2.9250 25 6 6.8363 -2.6781 4.7812 26 6 7.4494 -3.1613 5.8273 27 6 7.7672 -4.6269 5.6429 28 6 6.8710 -5.0784 4.4665 29 6 3.5368 -0.8963 1.0535 30 1 -0.3633 0.5421 0.8731 31 1 -0.3633 0.4851 -0.9060 32 1 -0.3633 -1.0271 0.0328 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1083 35 1 2.5234 3.8013 -0.8495 36 1 2.0466 6.7529 -4.2304 37 1 1.5147 -2.5897 0.0262 38 1 0.5886 -2.3916 1.5501 39 1 2.8966 -3.9322 1.3475 40 1 2.3528 -3.1608 2.8634 41 1 4.5042 -3.7297 3.9785 42 1 5.0638 -4.5210 2.4855 43 1 6.5094 -1.6534 4.6839 44 1 7.6963 -2.5889 6.7092 45 1 8.8195 -4.7585 5.3909 46 1 7.5212 -5.1853 6.5462 47 1 5.9291 -5.4909 4.8281 48 1 7.3915 -5.7948 3.8307 49 1 4.0161 -0.0284 1.5066 50 1 3.8539 -1.0056 0.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188784010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:37 Heat of formation + Delta-G solvation = -60.051269 kcal Electronic energy + Delta-G solvation = -28828.845521 eV Core-core repulsion = 24855.620863 eV Total energy + Delta-G solvation = -3973.224658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38756 -40.54387 -39.62357 -38.62162 -36.74465 -35.83237 -33.76731 -32.85520 -31.72377 -30.06434 -29.72253 -29.43865 -26.83744 -26.47216 -24.76818 -23.78125 -21.45088 -21.38715 -21.13967 -20.46281 -20.08963 -19.43838 -18.22278 -17.90152 -17.50779 -16.89942 -16.77455 -16.51413 -16.35000 -15.88939 -15.79971 -15.46876 -15.32248 -14.88997 -14.68051 -14.36378 -14.26652 -14.01883 -13.79928 -13.68721 -13.32559 -13.16171 -12.91386 -12.80540 -12.75913 -12.66688 -12.59254 -12.43515 -12.36759 -12.07046 -12.01866 -11.99207 -11.87687 -11.82389 -11.66160 -11.49275 -10.82665 -10.38742 -10.24737 -9.78766 -9.66612 -9.27418 -8.42724 -6.02751 1.27632 1.33077 1.39222 1.41059 1.65009 1.89587 1.94113 2.20475 2.61231 3.12650 3.20803 3.33424 3.64511 3.68655 3.74301 3.97676 3.99257 4.02905 4.08999 4.25940 4.30965 4.33766 4.38636 4.41011 4.48972 4.56709 4.57893 4.64132 4.68236 4.71472 4.75936 4.81698 4.90550 4.99258 5.00052 5.02962 5.11407 5.19344 5.21109 5.29439 5.32113 5.43900 5.51598 5.70027 5.85745 5.96920 5.99742 6.17013 6.53898 6.58204 6.87194 7.17012 7.38363 7.95035 8.74711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002242 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.495731 B =12486.143195 C =13860.429386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.527 5.527 3 C 0.051 3.949 4 C 0.454 3.546 5 O -0.600 6.600 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.058 0.942 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.260 1.260 13 H -0.273 1.273 14 H -0.234 1.234 15 C 0.073 3.927 16 H 0.070 0.930 17 C -0.117 4.117 18 C 0.102 3.898 19 N -0.620 5.620 20 C 0.519 3.481 21 O -0.586 6.586 22 C -0.116 4.116 23 C -0.057 4.057 24 H 0.065 0.935 25 C -0.167 4.167 26 C -0.175 4.175 27 C -0.101 4.101 28 C -0.113 4.113 29 C 0.111 3.889 30 H 0.033 0.967 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -24.120 25.474 35.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.252 5.252 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.484 6.484 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.077 0.923 9 C -0.213 4.213 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.157 1.157 15 C -0.035 4.035 16 H 0.088 0.912 17 C -0.155 4.155 18 C -0.020 4.020 19 N -0.354 5.354 20 C 0.310 3.690 21 O -0.466 6.466 22 C -0.155 4.155 23 C -0.075 4.075 24 H 0.084 0.916 25 C -0.185 4.185 26 C -0.193 4.193 27 C -0.138 4.138 28 C -0.151 4.151 29 C -0.013 4.013 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.223 0.777 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.081 0.919 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.387 -24.215 24.335 34.919 hybrid contribution 0.267 2.097 0.302 2.135 sum 6.654 -22.118 24.637 33.771 Atomic orbital electron populations 1.22444 0.85736 1.03017 1.00828 1.61520 1.09435 1.11802 1.42461 1.21849 1.02162 0.90106 0.93865 1.20766 0.83004 0.81751 0.90358 1.90510 1.43989 1.65008 1.48913 1.42066 1.51869 1.12650 1.17005 1.18996 1.34707 0.96983 0.94693 0.92343 1.26057 0.98663 0.97023 0.99561 1.69796 1.47208 1.14369 1.25968 0.85422 0.78984 0.78365 0.79135 1.18509 1.19780 1.15712 1.22807 0.93021 0.95762 0.91955 0.91215 1.22731 0.99216 0.91497 1.02092 1.22308 0.83302 0.93970 1.02389 1.48604 1.13175 1.20856 1.52792 1.21170 0.80064 0.89452 0.78343 1.90701 1.41719 1.51636 1.62543 1.21733 0.98974 0.93923 1.00894 1.20844 0.95482 0.94457 0.96740 0.91630 1.23271 1.00839 0.98756 0.95657 1.23525 0.99442 0.97873 0.98487 1.21406 1.00226 0.92804 0.99395 1.22564 1.01026 0.95115 0.96368 1.22088 0.95069 0.88178 0.95948 0.94874 0.92766 0.89110 0.90425 0.87578 0.77748 0.91167 0.90218 0.87371 0.89009 0.88397 0.86562 0.86205 0.88294 0.85522 0.90659 0.89676 0.89044 0.89661 0.91911 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.05 127.69 1.16 1.91 16 2 N -0.53 -15.24 4.40 -893.41 -3.93 -19.17 16 3 C 0.05 1.65 5.33 85.56 0.46 2.11 16 4 C 0.45 20.81 7.52 87.66 0.66 21.46 16 5 O -0.60 -32.97 13.88 -3.07 -0.04 -33.01 16 6 N -0.59 -28.74 5.09 -306.97 -1.56 -30.30 16 7 C -0.32 -19.26 10.16 84.04 0.85 -18.41 16 8 H 0.06 4.10 7.39 -2.91 -0.02 4.08 16 9 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 10 N -0.93 -56.89 13.96 21.66 0.30 -56.59 16 11 Si 0.96 40.06 27.74 68.60 1.90 41.97 16 12 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.23 -8.31 6.52 99.48 0.65 -7.66 16 15 C 0.07 1.51 2.71 46.31 0.13 1.63 16 16 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.12 -1.63 5.33 31.78 0.17 -1.46 16 18 C 0.10 1.10 6.49 86.73 0.56 1.66 16 19 N -0.62 -11.90 3.33 -811.80 -2.70 -14.60 16 20 C 0.52 11.25 7.61 87.66 0.67 11.92 16 21 O -0.59 -18.37 14.94 -3.01 -0.04 -18.41 16 22 C -0.12 -1.44 4.31 29.85 0.13 -1.31 16 23 C -0.06 -0.87 2.55 -10.85 -0.03 -0.90 16 24 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 25 C -0.17 -3.15 9.19 26.26 0.24 -2.91 16 26 C -0.18 -2.63 10.77 26.26 0.28 -2.35 16 27 C -0.10 -1.07 6.81 30.53 0.21 -0.86 16 28 C -0.11 -1.03 6.71 31.71 0.21 -0.82 16 29 C 0.11 2.65 5.35 86.86 0.47 3.12 16 30 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.05 2.03 5.91 -2.38 -0.01 2.02 16 32 H 0.09 1.96 6.92 -2.39 -0.02 1.95 16 33 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 34 H 0.11 3.09 6.70 -2.38 -0.02 3.08 16 35 H 0.39 15.83 5.76 -92.71 -0.53 15.30 16 36 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 0.98 7.97 -2.39 -0.02 0.96 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 2.35 7.31 -2.91 -0.02 2.33 16 44 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.52 7.91 -2.39 -0.02 0.50 16 48 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.06 1.65 7.68 -2.38 -0.02 1.63 16 50 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -82.88 395.03 0.89 -81.99 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.34 Total: 33.68 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.63 Total: 14.46 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.89 Total: -120.67 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.09 Total: -51.43 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.90 Total: 41.97 kcal Total: -82.88 0.89 -81.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188784010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.939 kcal (2) G-P(sol) polarization free energy of solvation -82.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds