Wall clock time and date at job start Tue Mar 31 2020 18:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00252 * 2 1 4 4 C 1.50696 * 109.46870 * 293.95953 * 3 2 1 5 5 O 1.21288 * 120.00418 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99567 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99943 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00104 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99955 * 180.02562 * 7 6 4 10 10 N 1.31409 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00040 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46924 * 59.99859 * 11 9 7 13 13 H 1.48500 * 109.47152 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47007 * 300.00033 * 11 9 7 15 15 C 1.46896 * 111.00531 * 123.95953 * 2 1 3 16 16 H 1.08999 * 110.88371 * 298.47511 * 15 2 1 17 17 C 1.55152 * 111.00994 * 174.58771 * 15 2 1 18 18 C 1.54319 * 102.94283 * 206.38370 * 17 15 2 19 19 N 1.47021 * 107.27471 * 22.19547 * 18 17 15 20 20 C 1.34772 * 125.65163 * 181.02047 * 19 18 17 21 21 O 1.21280 * 120.00302 * 180.02562 * 20 19 18 22 22 C 1.50703 * 119.99717 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46920 * 179.97438 * 22 20 19 24 24 H 1.08996 * 110.43432 * 55.89790 * 23 22 20 25 25 C 1.51101 * 110.38591 * 293.54673 * 23 22 20 26 26 C 1.30525 * 111.10317 * 224.50453 * 25 23 22 27 27 C 1.51099 * 111.10506 * 0.25074 * 26 25 23 28 28 C 1.54635 * 104.72863 * 16.42949 * 27 26 25 29 29 C 1.47425 * 108.69966 * 1.28372 * 19 18 17 30 30 H 1.09004 * 109.46704 * 296.04107 * 1 2 3 31 31 H 1.08997 * 109.47688 * 56.04218 * 1 2 3 32 32 H 1.09001 * 109.47591 * 176.04349 * 1 2 3 33 33 H 1.09001 * 109.46781 * 53.95826 * 3 2 1 34 34 H 1.08992 * 109.47217 * 173.95824 * 3 2 1 35 35 H 0.97002 * 120.00051 * 0.02562 * 6 4 3 36 36 H 0.97002 * 120.00273 * 180.02562 * 10 9 7 37 37 H 1.09006 * 110.71663 * 88.02055 * 17 15 2 38 38 H 1.09000 * 110.71624 * 324.75055 * 17 15 2 39 39 H 1.08998 * 109.88272 * 262.77011 * 18 17 15 40 40 H 1.09006 * 109.87701 * 141.60947 * 18 17 15 41 41 H 1.08998 * 109.47227 * 60.00146 * 22 20 19 42 42 H 1.08996 * 109.47596 * 300.00156 * 22 20 19 43 43 H 1.08002 * 124.45105 * 44.77985 * 25 23 22 44 44 H 1.07999 * 124.44852 * 180.22364 * 26 25 23 45 45 H 1.08999 * 110.39225 * 135.24698 * 27 26 25 46 46 H 1.09001 * 110.38605 * 257.50906 * 27 26 25 47 47 H 1.09005 * 111.03380 * 93.39919 * 28 27 26 48 48 H 1.08988 * 111.04122 * 217.29818 * 28 27 26 49 49 H 1.09005 * 110.36731 * 94.48126 * 29 19 18 50 50 H 1.08996 * 110.36831 * 216.80600 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6368 2.0471 -1.2984 5 8 1.0053 1.4454 -2.1410 6 7 2.0180 3.3202 -1.5232 7 6 1.6922 3.9348 -2.7046 8 1 1.1298 3.3990 -3.4549 9 6 2.0856 5.2471 -2.9366 10 7 2.7703 5.8990 -2.0238 11 14 1.6423 6.0844 -4.5466 12 1 0.1652 6.1210 -4.6952 13 1 2.1738 7.4710 -4.5462 14 1 2.2350 5.3268 -5.6780 15 6 1.9955 -0.7660 1.1374 16 1 1.6815 -0.3234 2.0827 17 6 3.5410 -0.8807 1.0632 18 6 3.8284 -2.1852 1.8360 19 7 2.5945 -2.9845 1.8174 20 6 2.4288 -4.1871 2.4026 21 8 1.3623 -4.7589 2.3221 22 6 3.5688 -4.8214 3.1571 23 6 3.1196 -6.1717 3.7192 24 1 2.7466 -6.8117 2.9197 25 6 2.0569 -5.9749 4.7752 26 6 2.2866 -6.7249 5.8185 27 6 3.5440 -7.5423 5.6348 28 6 4.2891 -6.8597 4.4643 29 6 1.5706 -2.2553 1.0472 30 1 -0.3633 0.4512 0.9234 31 1 -0.3634 0.5740 -0.8523 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5612 1.9273 0.8310 34 1 3.0797 1.3444 0.1082 35 1 2.5234 3.8013 -0.8494 36 1 3.0446 6.8152 -2.1856 37 1 4.0148 -0.0299 1.5529 38 1 3.8721 -0.9647 0.0281 39 1 4.1046 -1.9534 2.8646 40 1 4.6336 -2.7350 1.3486 41 1 3.8697 -4.1690 3.9767 42 1 4.4123 -4.9706 2.4831 43 1 1.2152 -5.3052 4.6776 44 1 1.6603 -6.7566 6.6978 45 1 4.1511 -7.5138 6.5396 46 1 3.2936 -8.5718 5.3789 47 1 5.0083 -6.1278 4.8321 48 1 4.7763 -7.5977 3.8272 49 1 1.5673 -2.5890 0.0095 50 1 0.5870 -2.3965 1.4950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188784013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:47 Heat of formation + Delta-G solvation = -43.119069 kcal Electronic energy + Delta-G solvation = -28587.787998 eV Core-core repulsion = 24615.297576 eV Total energy + Delta-G solvation = -3972.490423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50634 -39.22637 -38.42784 -37.49558 -35.46713 -33.84536 -32.10091 -31.26689 -30.81711 -29.32944 -29.11946 -27.54757 -26.08745 -24.99931 -23.65246 -22.75767 -20.88312 -20.32300 -19.64087 -19.12380 -18.73096 -17.85863 -17.33257 -16.86247 -16.22360 -16.01432 -15.55822 -15.48024 -14.80540 -14.70253 -14.50972 -14.27971 -13.89527 -13.58904 -13.57897 -13.28605 -12.95317 -12.89584 -12.54678 -12.25351 -12.20685 -12.16492 -12.13833 -11.89107 -11.58044 -11.52383 -11.47660 -11.39973 -11.15487 -11.10851 -10.98657 -10.93057 -10.79671 -10.45006 -10.22566 -9.92963 -9.48125 -9.16194 -8.80933 -8.48826 -8.00704 -7.90839 -6.43050 -3.83858 2.05148 2.48801 2.74723 3.19200 3.25075 3.29425 3.88588 3.92826 4.08914 4.21921 4.29564 4.36175 4.49660 4.52940 4.67681 4.82875 4.93657 5.03230 5.05828 5.09348 5.14248 5.17885 5.22084 5.26993 5.30893 5.37583 5.47976 5.54446 5.60090 5.61568 5.64900 5.69572 5.78015 5.84430 5.87293 5.88351 5.93942 5.95730 6.04977 6.11867 6.26379 6.33304 6.53448 6.65621 7.17793 7.32899 7.35774 7.53872 8.01122 8.04788 8.60361 9.16831 9.52816 10.04738 10.74541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.001763 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.764784 B =15880.717957 C =16194.423561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.023 3.977 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.128 4.128 18 C 0.103 3.897 19 N -0.620 5.620 20 C 0.527 3.473 21 O -0.539 6.539 22 C -0.127 4.127 23 C -0.055 4.055 24 H 0.090 0.910 25 C -0.141 4.141 26 C -0.183 4.183 27 C -0.099 4.099 28 C -0.122 4.122 29 C 0.117 3.883 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.081 0.919 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -19.756 16.408 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.231 5.231 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.166 4.166 18 C -0.021 4.021 19 N -0.355 5.355 20 C 0.317 3.683 21 O -0.416 6.416 22 C -0.167 4.167 23 C -0.073 4.073 24 H 0.108 0.892 25 C -0.158 4.158 26 C -0.201 4.201 27 C -0.136 4.136 28 C -0.160 4.160 29 C -0.006 4.006 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.382 -20.574 15.391 26.252 hybrid contribution -0.126 1.402 0.420 1.469 sum 5.257 -19.172 15.811 25.401 Atomic orbital electron populations 1.22577 0.86333 1.02233 1.01636 1.61605 1.08854 1.12931 1.39738 1.21875 1.00815 0.88611 0.97271 1.19700 0.85541 0.82950 0.88908 1.90491 1.43877 1.64630 1.47078 1.41855 1.49435 1.10728 1.18029 1.19650 1.33039 0.95469 0.94746 0.87953 1.25251 0.96784 0.96633 0.99206 1.69599 1.37991 1.12282 1.34470 0.85923 0.78909 0.77913 0.81502 1.19935 1.20997 1.19889 1.22828 0.94914 0.93402 0.92975 0.92767 1.22766 0.95410 0.96227 1.02240 1.22067 0.87183 0.92172 1.00631 1.48512 1.14470 1.19070 1.53441 1.20370 0.89809 0.79469 0.78693 1.90710 1.28212 1.61784 1.60860 1.21696 0.97173 0.97439 1.00387 1.20875 0.94041 0.94883 0.97510 0.89186 1.23326 0.98968 0.99265 0.94291 1.23252 0.98966 0.98928 0.98979 1.21331 0.94844 0.99016 0.98419 1.22588 0.96907 0.99595 0.96865 1.22221 0.91704 0.89824 0.96811 0.96621 0.88300 0.91975 0.93439 0.89231 0.77520 0.91835 0.89812 0.88879 0.91319 0.91040 0.88826 0.88742 0.85699 0.86102 0.91368 0.90892 0.90830 0.90809 0.90030 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.01 60.06 0.54 0.86 16 2 N -0.51 -8.04 4.40 -233.61 -1.03 -9.07 16 3 C 0.05 0.77 5.32 -4.98 -0.03 0.75 16 4 C 0.44 10.15 7.47 -10.99 -0.08 10.06 16 5 O -0.58 -15.15 13.91 5.55 0.08 -15.08 16 6 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 7 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 10 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 11 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 C 0.07 0.84 2.72 -65.45 -0.18 0.66 16 16 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.13 -1.27 5.31 -24.90 -0.13 -1.40 16 18 C 0.10 0.84 6.48 -3.07 -0.02 0.82 16 19 N -0.62 -6.76 3.32 -170.38 -0.57 -7.33 16 20 C 0.53 6.06 7.61 -10.99 -0.08 5.98 16 21 O -0.54 -8.12 14.94 5.56 0.08 -8.04 16 22 C -0.13 -0.99 4.31 -27.88 -0.12 -1.11 16 23 C -0.05 -0.46 2.55 -90.63 -0.23 -0.69 16 24 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 25 C -0.14 -1.34 9.19 -35.70 -0.33 -1.67 16 26 C -0.18 -1.49 10.77 -35.70 -0.38 -1.87 16 27 C -0.10 -0.65 6.81 -26.83 -0.18 -0.83 16 28 C -0.12 -0.76 6.71 -24.92 -0.17 -0.92 16 29 C 0.12 1.47 5.39 -2.41 -0.01 1.45 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.93 5.82 -51.93 -0.30 1.62 16 32 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.09 1.34 6.73 -51.93 -0.35 0.99 16 35 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 36 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.13 1.39 7.31 -52.49 -0.38 1.01 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.39 7.93 -51.93 -0.41 -0.02 16 48 H 0.07 0.39 8.14 -51.94 -0.42 -0.03 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -32.25 398.47 -9.82 -42.06 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -8.38 Total: 8.80 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.65 Total: 4.24 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.93 Total: -53.79 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.16 Total: -23.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.25 -9.82 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188784013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.056 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds