Wall clock time and date at job start Tue Mar 31 2020 18:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00252 * 2 1 4 4 C 1.50696 * 109.46870 * 293.95953 * 3 2 1 5 5 O 1.21288 * 120.00418 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99567 * 179.97438 * 4 3 2 7 7 C 1.37100 * 119.99943 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00104 * 0.02562 * 7 6 4 9 9 C 1.38951 * 119.99955 * 180.02562 * 7 6 4 10 10 N 1.31409 * 120.00186 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00040 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46924 * 59.99859 * 11 9 7 13 13 H 1.48500 * 109.47152 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47007 * 300.00033 * 11 9 7 15 15 C 1.46896 * 111.00531 * 123.95953 * 2 1 3 16 16 H 1.08999 * 110.88371 * 298.47511 * 15 2 1 17 17 C 1.55152 * 111.00994 * 174.58771 * 15 2 1 18 18 C 1.54319 * 102.94283 * 206.38370 * 17 15 2 19 19 N 1.47021 * 107.27471 * 22.19547 * 18 17 15 20 20 C 1.34772 * 125.65163 * 181.02047 * 19 18 17 21 21 O 1.21280 * 120.00302 * 180.02562 * 20 19 18 22 22 C 1.50703 * 119.99717 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46920 * 179.97438 * 22 20 19 24 24 H 1.08996 * 110.43432 * 55.89790 * 23 22 20 25 25 C 1.51101 * 110.38591 * 293.54673 * 23 22 20 26 26 C 1.30525 * 111.10317 * 224.50453 * 25 23 22 27 27 C 1.51099 * 111.10506 * 0.25074 * 26 25 23 28 28 C 1.54635 * 104.72863 * 16.42949 * 27 26 25 29 29 C 1.47425 * 108.69966 * 1.28372 * 19 18 17 30 30 H 1.09004 * 109.46704 * 296.04107 * 1 2 3 31 31 H 1.08997 * 109.47688 * 56.04218 * 1 2 3 32 32 H 1.09001 * 109.47591 * 176.04349 * 1 2 3 33 33 H 1.09001 * 109.46781 * 53.95826 * 3 2 1 34 34 H 1.08992 * 109.47217 * 173.95824 * 3 2 1 35 35 H 0.97002 * 120.00051 * 0.02562 * 6 4 3 36 36 H 0.97002 * 120.00273 * 180.02562 * 10 9 7 37 37 H 1.09006 * 110.71663 * 88.02055 * 17 15 2 38 38 H 1.09000 * 110.71624 * 324.75055 * 17 15 2 39 39 H 1.08998 * 109.88272 * 262.77011 * 18 17 15 40 40 H 1.09006 * 109.87701 * 141.60947 * 18 17 15 41 41 H 1.08998 * 109.47227 * 60.00146 * 22 20 19 42 42 H 1.08996 * 109.47596 * 300.00156 * 22 20 19 43 43 H 1.08002 * 124.45105 * 44.77985 * 25 23 22 44 44 H 1.07999 * 124.44852 * 180.22364 * 26 25 23 45 45 H 1.08999 * 110.39225 * 135.24698 * 27 26 25 46 46 H 1.09001 * 110.38605 * 257.50906 * 27 26 25 47 47 H 1.09005 * 111.03380 * 93.39919 * 28 27 26 48 48 H 1.08988 * 111.04122 * 217.29818 * 28 27 26 49 49 H 1.09005 * 110.36731 * 94.48126 * 29 19 18 50 50 H 1.08996 * 110.36831 * 216.80600 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6368 2.0471 -1.2984 5 8 1.0053 1.4454 -2.1410 6 7 2.0180 3.3202 -1.5232 7 6 1.6922 3.9348 -2.7046 8 1 1.1298 3.3990 -3.4549 9 6 2.0856 5.2471 -2.9366 10 7 2.7703 5.8990 -2.0238 11 14 1.6423 6.0844 -4.5466 12 1 0.1652 6.1210 -4.6952 13 1 2.1738 7.4710 -4.5462 14 1 2.2350 5.3268 -5.6780 15 6 1.9955 -0.7660 1.1374 16 1 1.6815 -0.3234 2.0827 17 6 3.5410 -0.8807 1.0632 18 6 3.8284 -2.1852 1.8360 19 7 2.5945 -2.9845 1.8174 20 6 2.4288 -4.1871 2.4026 21 8 1.3623 -4.7589 2.3221 22 6 3.5688 -4.8214 3.1571 23 6 3.1196 -6.1717 3.7192 24 1 2.7466 -6.8117 2.9197 25 6 2.0569 -5.9749 4.7752 26 6 2.2866 -6.7249 5.8185 27 6 3.5440 -7.5423 5.6348 28 6 4.2891 -6.8597 4.4643 29 6 1.5706 -2.2553 1.0472 30 1 -0.3633 0.4512 0.9234 31 1 -0.3634 0.5740 -0.8523 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5612 1.9273 0.8310 34 1 3.0797 1.3444 0.1082 35 1 2.5234 3.8013 -0.8494 36 1 3.0446 6.8152 -2.1856 37 1 4.0148 -0.0299 1.5529 38 1 3.8721 -0.9647 0.0281 39 1 4.1046 -1.9534 2.8646 40 1 4.6336 -2.7350 1.3486 41 1 3.8697 -4.1690 3.9767 42 1 4.4123 -4.9706 2.4831 43 1 1.2152 -5.3052 4.6776 44 1 1.6603 -6.7566 6.6978 45 1 4.1511 -7.5138 6.5396 46 1 3.2936 -8.5718 5.3789 47 1 5.0083 -6.1278 4.8321 48 1 4.7763 -7.5977 3.8272 49 1 1.5673 -2.5890 0.0095 50 1 0.5870 -2.3965 1.4950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188784013.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:46 Heat of formation + Delta-G solvation = -64.620051 kcal Electronic energy + Delta-G solvation = -28588.720351 eV Core-core repulsion = 24615.297576 eV Total energy + Delta-G solvation = -3973.422775 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37693 -40.43248 -39.57519 -38.59208 -36.71420 -35.76286 -33.26212 -32.84750 -31.65218 -30.36330 -29.76262 -28.81131 -27.15635 -26.43551 -24.92763 -23.63646 -21.59383 -21.30541 -20.87613 -20.35693 -19.81874 -19.43182 -18.20759 -17.89541 -17.55364 -16.85841 -16.58497 -16.48463 -16.28699 -16.03525 -15.76555 -15.38381 -15.22443 -15.09923 -14.73467 -14.24288 -14.02134 -13.81858 -13.71215 -13.44918 -13.39615 -13.05833 -12.96836 -12.86767 -12.76325 -12.66829 -12.60428 -12.41995 -12.23410 -12.12408 -12.06217 -12.00926 -11.87557 -11.82244 -11.66431 -11.43562 -10.83843 -10.27348 -9.97718 -9.78972 -9.67357 -9.27066 -8.44452 -5.92592 1.39043 1.40725 1.42830 1.53124 1.64051 1.89300 2.08307 2.30454 2.78316 3.22309 3.28806 3.44026 3.65088 3.67416 3.74438 3.97501 3.99161 4.05603 4.17040 4.31489 4.33600 4.37852 4.39404 4.48122 4.53288 4.56130 4.58206 4.61705 4.67659 4.70328 4.75722 4.81177 4.89098 4.99102 5.00168 5.03188 5.10156 5.12863 5.21709 5.26218 5.31411 5.43170 5.43942 5.69691 5.84593 5.99560 6.04548 6.17960 6.53072 6.63601 7.15651 7.15876 7.59516 8.15923 8.72532 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.039110 B = 0.001763 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.764784 B =15880.717957 C =16194.423561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.060 3.940 4 C 0.441 3.559 5 O -0.616 6.616 6 N -0.573 5.573 7 C -0.333 4.333 8 H 0.078 0.922 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.274 1.274 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.072 3.928 16 H 0.067 0.933 17 C -0.125 4.125 18 C 0.104 3.896 19 N -0.621 5.621 20 C 0.520 3.480 21 O -0.585 6.585 22 C -0.117 4.117 23 C -0.056 4.056 24 H 0.067 0.933 25 C -0.168 4.168 26 C -0.175 4.175 27 C -0.101 4.101 28 C -0.114 4.114 29 C 0.120 3.880 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.804 -19.982 18.243 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.228 3.772 5 O -0.502 6.502 6 N -0.211 5.211 7 C -0.462 4.462 8 H 0.096 0.904 9 C -0.211 4.211 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.037 4.037 16 H 0.085 0.915 17 C -0.163 4.163 18 C -0.018 4.018 19 N -0.355 5.355 20 C 0.311 3.689 21 O -0.466 6.466 22 C -0.156 4.156 23 C -0.075 4.075 24 H 0.085 0.915 25 C -0.186 4.186 26 C -0.193 4.193 27 C -0.138 4.138 28 C -0.151 4.151 29 C -0.004 4.004 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.075 -20.791 17.255 28.199 hybrid contribution -1.023 1.390 -0.118 1.730 sum 7.051 -19.401 17.137 26.829 Atomic orbital electron populations 1.22412 0.87008 1.02197 1.00573 1.61519 1.08554 1.12609 1.42255 1.21732 1.02553 0.88861 0.93946 1.20773 0.83725 0.82229 0.90432 1.90474 1.45170 1.65403 1.49119 1.41906 1.50096 1.11528 1.17568 1.19601 1.34459 0.96420 0.95759 0.90446 1.25974 0.96296 0.96604 1.02212 1.69655 1.38043 1.12644 1.35645 0.85032 0.78517 0.77344 0.77695 1.19933 1.19493 1.19810 1.22841 0.96723 0.92203 0.91891 0.91544 1.22799 0.93187 0.98214 1.02128 1.22277 0.86230 0.90980 1.02341 1.48625 1.14994 1.19126 1.52734 1.21151 0.90221 0.79213 0.78315 1.90690 1.30320 1.62993 1.62566 1.21739 0.96019 0.96969 1.00896 1.20870 0.94649 0.95187 0.96757 0.91453 1.23271 0.99309 1.00279 0.95719 1.23528 0.99416 0.97857 0.98493 1.21403 0.94167 0.98821 0.99407 1.22595 0.96139 0.99968 0.96425 1.22012 0.91952 0.90560 0.95851 0.95112 0.92173 0.91127 0.91458 0.86442 0.76959 0.91344 0.87519 0.90300 0.88418 0.88933 0.86694 0.86206 0.88302 0.85496 0.89741 0.90550 0.89142 0.89620 0.92116 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.01 127.69 1.15 2.00 16 2 N -0.52 -16.35 4.40 -893.02 -3.93 -20.28 16 3 C 0.06 1.96 5.32 85.56 0.46 2.41 16 4 C 0.44 20.45 7.47 87.66 0.66 21.11 16 5 O -0.62 -33.55 13.91 -3.05 -0.04 -33.59 16 6 N -0.57 -28.74 5.29 -306.99 -1.62 -30.37 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 10 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 11 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 15 C 0.07 1.65 2.72 46.38 0.13 1.78 16 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.13 -2.10 5.31 31.78 0.17 -1.93 16 18 C 0.10 1.32 6.48 86.73 0.56 1.88 16 19 N -0.62 -12.62 3.32 -811.35 -2.70 -15.31 16 20 C 0.52 11.57 7.61 87.66 0.67 12.24 16 21 O -0.59 -18.36 14.94 -3.03 -0.05 -18.40 16 22 C -0.12 -1.53 4.31 29.85 0.13 -1.40 16 23 C -0.06 -0.87 2.55 -10.80 -0.03 -0.90 16 24 H 0.07 1.33 8.01 -2.39 -0.02 1.32 16 25 C -0.17 -3.19 9.19 26.26 0.24 -2.95 16 26 C -0.18 -2.65 10.77 26.26 0.28 -2.37 16 27 C -0.10 -1.08 6.81 30.53 0.21 -0.87 16 28 C -0.11 -1.08 6.71 31.77 0.21 -0.87 16 29 C 0.12 3.00 5.39 86.93 0.47 3.46 16 30 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 2.45 5.82 -2.39 -0.01 2.44 16 32 H 0.07 2.13 7.15 -2.39 -0.02 2.11 16 33 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 34 H 0.12 3.20 6.73 -2.39 -0.02 3.18 16 35 H 0.40 18.72 7.90 -92.71 -0.73 17.98 16 36 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 37 H 0.11 1.34 7.88 -2.38 -0.02 1.32 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 2.36 7.31 -2.91 -0.02 2.34 16 44 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 45 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.58 7.93 -2.38 -0.02 0.56 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.06 1.67 7.90 -2.39 -0.02 1.65 16 Total: -1.00 -73.74 398.47 0.76 -72.99 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.20 Total: 33.14 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.58 Total: 15.62 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -7.96 Total: -114.39 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -0.09 Total: -51.99 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.74 0.76 -72.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188784013.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds