Wall clock time and date at job start Tue Mar 31 2020 18:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00203 * 2 1 4 4 C 1.50698 * 109.46991 * 66.04447 * 3 2 1 5 5 O 1.21292 * 120.00423 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00508 * 179.97438 * 6 4 3 8 8 H 1.08010 * 119.99452 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00428 * 180.02562 * 7 6 4 10 10 N 1.31404 * 119.99795 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99946 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47291 * 89.99737 * 11 9 7 13 13 H 1.48505 * 109.46562 * 209.99768 * 11 9 7 14 14 H 1.48498 * 109.47027 * 329.99493 * 11 9 7 15 15 C 1.46900 * 111.00011 * 236.04256 * 2 1 3 16 16 H 1.08998 * 110.88584 * 67.83736 * 15 2 1 17 17 C 1.55160 * 111.00415 * 191.76012 * 15 2 1 18 18 C 1.54322 * 102.94401 * 153.57734 * 17 15 2 19 19 N 1.47022 * 107.26842 * 337.80602 * 18 17 15 20 20 C 1.34783 * 125.64711 * 178.90285 * 19 18 17 21 21 O 1.21281 * 119.99729 * 174.82076 * 20 19 18 22 22 C 1.50699 * 119.99873 * 354.81953 * 20 19 18 23 23 H 1.08997 * 109.64065 * 34.01367 * 22 20 19 24 24 C 1.53024 * 109.64053 * 273.59717 * 22 20 19 25 25 C 1.50172 * 110.09214 * 191.09588 * 24 22 20 26 26 C 1.29439 * 124.14697 * 16.71941 * 25 24 22 27 27 C 1.50069 * 124.07724 * 359.75693 * 26 25 24 28 28 C 1.53018 * 110.14728 * 17.13214 * 27 26 25 29 29 C 1.47424 * 108.70709 * 358.94054 * 19 18 17 30 30 H 1.09001 * 109.46712 * 60.00094 * 1 2 3 31 31 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47149 * 300.00354 * 1 2 3 33 33 H 1.09001 * 109.46868 * 186.04376 * 3 2 1 34 34 H 1.08998 * 109.46931 * 306.04316 * 3 2 1 35 35 H 0.97003 * 120.00038 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00010 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.71857 * 271.94319 * 17 15 2 38 38 H 1.09002 * 110.71617 * 35.21221 * 17 15 2 39 39 H 1.09001 * 109.88447 * 218.39461 * 18 17 15 40 40 H 1.08993 * 110.00965 * 97.29533 * 18 17 15 41 41 H 1.09004 * 109.35796 * 311.08511 * 24 22 20 42 42 H 1.08997 * 109.35997 * 70.67694 * 24 22 20 43 43 H 1.07996 * 117.88741 * 196.96801 * 25 24 22 44 44 H 1.07995 * 117.96233 * 179.73961 * 26 25 24 45 45 H 1.09002 * 109.35508 * 256.92640 * 27 26 25 46 46 H 1.08993 * 109.35802 * 137.34034 * 27 26 25 47 47 H 1.09002 * 109.64510 * 190.88025 * 28 27 26 48 48 H 1.09005 * 109.81704 * 70.35342 * 28 27 26 49 49 H 1.09001 * 110.37036 * 265.28873 * 29 19 18 50 50 H 1.08997 * 110.36914 * 142.96292 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0180 3.3201 1.5233 7 6 1.6915 3.9351 2.7043 8 1 1.1291 3.3992 3.4546 9 6 2.0839 5.2477 2.9359 10 7 2.7685 5.8996 2.0231 11 14 1.6395 6.0853 4.5454 12 1 2.7167 5.8497 5.5400 13 1 1.4862 7.5448 4.3179 14 1 0.3622 5.5273 5.0575 15 6 1.9954 -0.7661 -1.1375 16 1 1.7760 -0.2633 -2.0794 17 6 3.5187 -1.0171 -0.9818 18 6 3.7400 -2.3125 -1.7907 19 7 2.4441 -3.0017 -1.8743 20 6 2.2119 -4.1626 -2.5184 21 8 1.1224 -4.6902 -2.4437 22 6 3.3060 -4.8050 -3.3316 23 1 4.2710 -4.6160 -2.8614 24 6 3.3018 -4.2259 -4.7480 25 6 4.1961 -5.0381 -5.6401 26 6 4.6172 -6.2289 -5.3569 27 6 4.2749 -6.9636 -4.0939 28 6 3.0628 -6.3170 -3.4200 29 6 1.4403 -2.2123 -1.1376 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5234 3.8014 0.8495 36 1 3.0428 6.8158 2.1849 37 1 4.0909 -0.1933 -1.4085 38 1 3.7795 -1.1673 0.0659 39 1 4.4655 -2.9476 -1.2824 40 1 4.0965 -2.0706 -2.7919 41 1 2.2863 -4.2463 -5.1437 42 1 3.6551 -3.1952 -4.7180 43 1 4.5105 -4.5988 -6.5752 44 1 5.2543 -6.7246 -6.0743 45 1 5.1266 -6.9303 -3.4145 46 1 4.0450 -8.0023 -4.3312 47 1 2.9384 -6.7273 -2.4179 48 1 2.1660 -6.5100 -4.0088 49 1 1.3424 -2.5811 -0.1165 50 1 0.4785 -2.2494 -1.6490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188845545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:07 Heat of formation + Delta-G solvation = -51.053162 kcal Electronic energy + Delta-G solvation = -28950.412545 eV Core-core repulsion = 24977.578074 eV Total energy + Delta-G solvation = -3972.834471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68401 -39.12220 -38.16866 -37.36199 -35.48854 -33.84606 -31.94699 -31.26676 -31.23650 -30.70255 -29.18514 -27.49263 -25.58272 -24.52801 -23.69717 -22.99919 -22.45710 -20.28170 -19.46974 -19.09381 -18.31644 -17.86644 -17.44735 -16.74017 -16.35708 -15.94209 -15.53949 -14.94518 -14.73717 -14.48929 -14.31069 -14.16062 -14.05684 -13.70772 -13.61331 -13.56868 -13.40429 -12.92163 -12.86552 -12.83175 -12.63676 -12.43848 -12.21681 -11.90284 -11.52625 -11.45238 -11.33884 -11.17958 -11.14389 -10.99688 -10.94938 -10.78769 -10.76637 -10.40351 -10.23025 -9.85830 -9.49095 -9.39139 -8.82849 -8.49322 -8.00686 -7.90274 -6.43159 -3.83833 1.89648 2.41919 2.71175 3.16912 3.25754 3.31481 3.88542 3.92166 4.05462 4.21871 4.30875 4.33819 4.49561 4.51643 4.75112 4.81950 4.88111 4.91554 5.03224 5.04951 5.12243 5.15578 5.16900 5.25343 5.27537 5.34160 5.47611 5.52009 5.56004 5.59535 5.63591 5.70602 5.77445 5.80763 5.85573 5.86464 5.93003 5.94846 6.05541 6.12649 6.24363 6.26508 6.54297 6.54494 7.17272 7.32407 7.33469 7.54087 7.97181 8.05011 8.60367 9.16980 9.52909 10.04782 10.74563 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.001905 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.128799 B =14696.202242 C =15130.840275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.126 4.126 18 C 0.102 3.898 19 N -0.617 5.617 20 C 0.533 3.467 21 O -0.539 6.539 22 C -0.102 4.102 23 H 0.093 0.907 24 C -0.078 4.078 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.092 4.092 28 C -0.101 4.101 29 C 0.116 3.884 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -19.153 -16.259 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.201 5.201 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.164 4.164 18 C -0.021 4.021 19 N -0.352 5.352 20 C 0.322 3.678 21 O -0.416 6.416 22 C -0.123 4.123 23 H 0.111 0.889 24 C -0.115 4.115 25 C -0.171 4.171 26 C -0.173 4.173 27 C -0.129 4.129 28 C -0.139 4.139 29 C -0.007 4.007 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.662 -19.942 -15.250 25.736 hybrid contribution 0.075 1.390 -0.493 1.477 sum 5.737 -18.552 -15.744 24.999 Atomic orbital electron populations 1.22599 0.86361 1.01726 1.02231 1.61635 1.08842 1.12965 1.39643 1.21876 1.00781 0.88564 0.97286 1.19696 0.85516 0.82949 0.88893 1.90489 1.43871 1.64626 1.47079 1.41859 1.49440 1.10727 1.18060 1.19696 1.32938 0.95403 0.94742 0.87902 1.25255 0.96843 0.96648 0.99209 1.69606 1.38088 1.12264 1.34384 0.85861 0.79104 0.78046 0.81302 1.20404 1.20963 1.19433 1.22784 0.94894 0.93397 0.93045 0.92735 1.22742 0.95648 0.96021 1.02023 1.22096 0.85589 0.93947 1.00476 1.48492 1.11348 1.22586 1.52763 1.20303 0.89337 0.79241 0.78914 1.90707 1.25927 1.62067 1.62895 1.21354 0.98057 0.96941 0.95991 0.88898 1.20357 1.00281 0.98957 0.91927 1.21985 0.99277 0.96037 0.99810 1.22083 1.00676 0.96150 0.98382 1.20489 0.98035 0.99298 0.95083 1.21452 0.98548 0.92192 1.01716 1.22220 0.91740 0.89339 0.97395 0.96553 0.91975 0.88234 0.89286 0.93409 0.77523 0.91890 0.89821 0.88857 0.91071 0.91291 0.90212 0.90443 0.87527 0.87791 0.90689 0.90598 0.91127 0.90618 0.90013 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.98 60.06 0.54 0.83 16 2 N -0.51 -8.01 4.40 -233.75 -1.03 -9.04 16 3 C 0.05 0.78 5.36 -4.98 -0.03 0.76 16 4 C 0.44 10.16 7.51 -10.99 -0.08 10.07 16 5 O -0.58 -15.14 13.89 5.55 0.08 -15.07 16 6 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.17 13.05 55.50 0.72 -23.45 16 11 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 12 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.07 0.84 2.71 -65.56 -0.18 0.66 16 16 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -1.26 5.61 -24.90 -0.14 -1.40 16 18 C 0.10 0.86 6.09 -3.07 -0.02 0.84 16 19 N -0.62 -6.83 3.33 -170.52 -0.57 -7.40 16 20 C 0.53 6.34 6.93 -10.98 -0.08 6.27 16 21 O -0.54 -8.45 16.56 5.56 0.09 -8.36 16 22 C -0.10 -0.87 2.13 -91.56 -0.20 -1.07 16 23 H 0.09 0.67 7.27 -51.93 -0.38 0.29 16 24 C -0.08 -0.59 5.44 -28.13 -0.15 -0.74 16 25 C -0.15 -1.02 9.80 -35.85 -0.35 -1.38 16 26 C -0.15 -0.99 9.80 -35.90 -0.35 -1.35 16 27 C -0.09 -0.58 6.12 -28.18 -0.17 -0.75 16 28 C -0.10 -0.85 4.73 -26.52 -0.13 -0.97 16 29 C 0.12 1.45 5.03 -2.53 -0.01 1.43 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.89 6.76 -51.93 -0.35 0.53 16 32 H 0.10 1.94 5.88 -51.93 -0.31 1.63 16 33 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 34 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 40 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 41 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 43 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 49 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 50 H 0.08 0.99 7.89 -51.93 -0.41 0.58 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -32.28 395.65 -9.74 -42.01 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.33 Total: 8.16 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.59 Total: 5.37 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.93 Total: -53.89 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.28 -9.74 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188845545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.041 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds