Wall clock time and date at job start Tue Mar 31 2020 18:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00203 * 2 1 4 4 C 1.50698 * 109.46991 * 66.04447 * 3 2 1 5 5 O 1.21292 * 120.00423 * 0.02562 * 4 3 2 6 6 N 1.34776 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.37094 * 120.00508 * 179.97438 * 6 4 3 8 8 H 1.08010 * 119.99452 * 0.02562 * 7 6 4 9 9 C 1.38949 * 120.00428 * 180.02562 * 7 6 4 10 10 N 1.31404 * 119.99795 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99946 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47291 * 89.99737 * 11 9 7 13 13 H 1.48505 * 109.46562 * 209.99768 * 11 9 7 14 14 H 1.48498 * 109.47027 * 329.99493 * 11 9 7 15 15 C 1.46900 * 111.00011 * 236.04256 * 2 1 3 16 16 H 1.08998 * 110.88584 * 67.83736 * 15 2 1 17 17 C 1.55160 * 111.00415 * 191.76012 * 15 2 1 18 18 C 1.54322 * 102.94401 * 153.57734 * 17 15 2 19 19 N 1.47022 * 107.26842 * 337.80602 * 18 17 15 20 20 C 1.34783 * 125.64711 * 178.90285 * 19 18 17 21 21 O 1.21281 * 119.99729 * 174.82076 * 20 19 18 22 22 C 1.50699 * 119.99873 * 354.81953 * 20 19 18 23 23 H 1.08997 * 109.64065 * 34.01367 * 22 20 19 24 24 C 1.53024 * 109.64053 * 273.59717 * 22 20 19 25 25 C 1.50172 * 110.09214 * 191.09588 * 24 22 20 26 26 C 1.29439 * 124.14697 * 16.71941 * 25 24 22 27 27 C 1.50069 * 124.07724 * 359.75693 * 26 25 24 28 28 C 1.53018 * 110.14728 * 17.13214 * 27 26 25 29 29 C 1.47424 * 108.70709 * 358.94054 * 19 18 17 30 30 H 1.09001 * 109.46712 * 60.00094 * 1 2 3 31 31 H 1.09001 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47149 * 300.00354 * 1 2 3 33 33 H 1.09001 * 109.46868 * 186.04376 * 3 2 1 34 34 H 1.08998 * 109.46931 * 306.04316 * 3 2 1 35 35 H 0.97003 * 120.00038 * 359.97438 * 6 4 3 36 36 H 0.96999 * 120.00010 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.71857 * 271.94319 * 17 15 2 38 38 H 1.09002 * 110.71617 * 35.21221 * 17 15 2 39 39 H 1.09001 * 109.88447 * 218.39461 * 18 17 15 40 40 H 1.08993 * 110.00965 * 97.29533 * 18 17 15 41 41 H 1.09004 * 109.35796 * 311.08511 * 24 22 20 42 42 H 1.08997 * 109.35997 * 70.67694 * 24 22 20 43 43 H 1.07996 * 117.88741 * 196.96801 * 25 24 22 44 44 H 1.07995 * 117.96233 * 179.73961 * 26 25 24 45 45 H 1.09002 * 109.35508 * 256.92640 * 27 26 25 46 46 H 1.08993 * 109.35802 * 137.34034 * 27 26 25 47 47 H 1.09002 * 109.64510 * 190.88025 * 28 27 26 48 48 H 1.09005 * 109.81704 * 70.35342 * 28 27 26 49 49 H 1.09001 * 110.37036 * 265.28873 * 29 19 18 50 50 H 1.08997 * 110.36914 * 142.96292 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0054 1.4453 2.1411 6 7 2.0180 3.3201 1.5233 7 6 1.6915 3.9351 2.7043 8 1 1.1291 3.3992 3.4546 9 6 2.0839 5.2477 2.9359 10 7 2.7685 5.8996 2.0231 11 14 1.6395 6.0853 4.5454 12 1 2.7167 5.8497 5.5400 13 1 1.4862 7.5448 4.3179 14 1 0.3622 5.5273 5.0575 15 6 1.9954 -0.7661 -1.1375 16 1 1.7760 -0.2633 -2.0794 17 6 3.5187 -1.0171 -0.9818 18 6 3.7400 -2.3125 -1.7907 19 7 2.4441 -3.0017 -1.8743 20 6 2.2119 -4.1626 -2.5184 21 8 1.1224 -4.6902 -2.4437 22 6 3.3060 -4.8050 -3.3316 23 1 4.2710 -4.6160 -2.8614 24 6 3.3018 -4.2259 -4.7480 25 6 4.1961 -5.0381 -5.6401 26 6 4.6172 -6.2289 -5.3569 27 6 4.2749 -6.9636 -4.0939 28 6 3.0628 -6.3170 -3.4200 29 6 1.4403 -2.2123 -1.1376 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5234 3.8014 0.8495 36 1 3.0428 6.8158 2.1849 37 1 4.0909 -0.1933 -1.4085 38 1 3.7795 -1.1673 0.0659 39 1 4.4655 -2.9476 -1.2824 40 1 4.0965 -2.0706 -2.7919 41 1 2.2863 -4.2463 -5.1437 42 1 3.6551 -3.1952 -4.7180 43 1 4.5105 -4.5988 -6.5752 44 1 5.2543 -6.7246 -6.0743 45 1 5.1266 -6.9303 -3.4145 46 1 4.0450 -8.0023 -4.3312 47 1 2.9384 -6.7273 -2.4179 48 1 2.1660 -6.5100 -4.0088 49 1 1.3424 -2.5811 -0.1165 50 1 0.4785 -2.2494 -1.6490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188845545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:06 Heat of formation + Delta-G solvation = -72.655542 kcal Electronic energy + Delta-G solvation = -28951.349294 eV Core-core repulsion = 24977.578074 eV Total energy + Delta-G solvation = -3973.771220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56401 -40.44730 -39.38109 -38.31041 -36.75091 -35.76749 -33.26132 -32.69835 -31.82866 -31.48000 -30.32742 -28.75132 -27.05916 -25.84607 -24.55343 -23.89861 -23.19560 -21.41969 -20.89650 -20.19880 -19.81424 -18.93539 -18.27316 -17.83562 -17.50131 -17.03270 -16.60316 -16.38338 -16.11693 -15.92850 -15.41586 -15.26612 -15.14248 -14.88010 -14.64252 -14.56968 -14.18415 -14.04495 -13.80159 -13.72184 -13.58924 -13.42953 -13.27336 -13.16984 -13.05936 -12.93192 -12.61485 -12.40648 -12.24969 -12.12814 -12.00828 -11.89705 -11.83345 -11.68643 -11.43935 -11.37014 -10.74272 -10.27197 -9.97636 -9.86511 -9.72559 -9.26063 -8.44669 -5.92570 1.38801 1.41477 1.42747 1.53461 1.54873 1.82541 2.08417 2.30126 2.77149 3.21946 3.24293 3.43668 3.60355 3.65943 3.73494 3.82091 4.04822 4.13654 4.17875 4.28819 4.29714 4.32917 4.38600 4.39457 4.46062 4.53130 4.56844 4.57088 4.61428 4.68066 4.70543 4.77921 4.85911 4.90701 4.95320 5.04999 5.05479 5.11352 5.20629 5.24758 5.25969 5.34720 5.43467 5.78056 5.84806 6.04514 6.07188 6.18167 6.46006 6.63631 7.06434 7.15990 7.59726 8.16134 8.72619 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.001905 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.128799 B =14696.202242 C =15130.840275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.060 3.940 4 C 0.442 3.558 5 O -0.615 6.615 6 N -0.574 5.574 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.275 1.275 15 C 0.073 3.927 16 H 0.070 0.930 17 C -0.122 4.122 18 C 0.102 3.898 19 N -0.616 5.616 20 C 0.528 3.472 21 O -0.587 6.587 22 C -0.094 4.094 23 H 0.114 0.886 24 C -0.075 4.075 25 C -0.161 4.161 26 C -0.157 4.157 27 C -0.089 4.089 28 C -0.102 4.102 29 C 0.118 3.882 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -19.133 -17.969 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.460 4.460 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.200 1.200 15 C -0.036 4.036 16 H 0.088 0.912 17 C -0.160 4.160 18 C -0.020 4.020 19 N -0.350 5.350 20 C 0.319 3.681 21 O -0.467 6.467 22 C -0.115 4.115 23 H 0.132 0.868 24 C -0.113 4.113 25 C -0.178 4.178 26 C -0.175 4.175 27 C -0.126 4.126 28 C -0.140 4.140 29 C -0.006 4.006 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.105 -19.912 -16.986 27.399 hybrid contribution -0.717 1.304 0.042 1.489 sum 7.388 -18.608 -16.944 26.229 Atomic orbital electron populations 1.22433 0.87009 1.02015 1.00863 1.61549 1.08557 1.12623 1.42161 1.21735 1.02527 0.88835 0.93955 1.20774 0.83689 0.82218 0.90426 1.90475 1.45154 1.65394 1.49121 1.41912 1.50112 1.11541 1.17595 1.19625 1.34319 0.96328 0.95742 0.90459 1.25981 0.96382 0.96640 1.02219 1.69659 1.38160 1.12661 1.35559 0.84968 0.78575 0.77398 0.77640 1.19687 1.19612 1.19991 1.22799 0.96388 0.92269 0.92136 0.91231 1.22765 0.93846 0.97694 1.01735 1.22305 0.84385 0.93147 1.02123 1.48586 1.12093 1.22350 1.51944 1.20978 0.89485 0.79021 0.78629 1.90683 1.28064 1.63393 1.64599 1.21382 0.97401 0.96533 0.96220 0.86766 1.20347 0.99765 1.00006 0.91141 1.22055 0.99332 0.96230 1.00232 1.22257 1.00667 0.96046 0.98503 1.20494 0.97262 0.99535 0.95291 1.21436 0.98925 0.92561 1.01101 1.22043 0.92066 0.90054 0.96395 0.95164 0.90931 0.92171 0.86492 0.91389 0.76962 0.91360 0.87455 0.90367 0.89348 0.88356 0.91930 0.88964 0.86170 0.86261 0.89413 0.89783 0.92112 0.92599 0.92044 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 8.98 127.69 1.15 1.95 16 2 N -0.52 -16.15 4.40 -893.44 -3.93 -20.08 16 3 C 0.06 1.96 5.36 85.56 0.46 2.41 16 4 C 0.44 20.40 7.51 87.66 0.66 21.06 16 5 O -0.62 -33.44 13.89 -3.07 -0.04 -33.48 16 6 N -0.57 -28.72 5.29 -306.98 -1.62 -30.34 16 7 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 10 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 11 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.07 1.64 2.71 46.31 0.13 1.76 16 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.12 -2.06 5.61 31.78 0.18 -1.89 16 18 C 0.10 1.37 6.09 86.73 0.53 1.89 16 19 N -0.62 -12.74 3.33 -811.80 -2.70 -15.44 16 20 C 0.53 12.24 6.93 87.66 0.61 12.85 16 21 O -0.59 -18.98 16.56 -3.03 -0.05 -19.03 16 22 C -0.09 -1.45 2.13 -11.40 -0.02 -1.47 16 23 H 0.11 1.28 7.27 -2.39 -0.02 1.26 16 24 C -0.08 -0.98 5.44 29.69 0.16 -0.82 16 25 C -0.16 -1.73 9.80 27.07 0.27 -1.46 16 26 C -0.16 -1.59 9.80 27.04 0.27 -1.32 16 27 C -0.09 -0.94 6.12 29.66 0.18 -0.76 16 28 C -0.10 -1.65 4.73 30.73 0.15 -1.50 16 29 C 0.12 2.90 5.03 86.86 0.44 3.34 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 2.13 6.76 -2.39 -0.02 2.12 16 32 H 0.06 2.44 5.88 -2.39 -0.01 2.42 16 33 H 0.12 3.16 7.01 -2.39 -0.02 3.14 16 34 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 36 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 37 H 0.11 1.35 7.91 -2.39 -0.02 1.33 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 0.94 8.01 -2.39 -0.02 0.92 16 40 H 0.10 0.82 7.66 -2.39 -0.02 0.80 16 41 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.09 0.91 7.67 -2.39 -0.02 0.89 16 43 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 44 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.11 8.09 -2.38 -0.02 1.09 16 49 H 0.06 1.75 8.12 -2.39 -0.02 1.73 16 50 H 0.06 1.71 7.89 -2.39 -0.02 1.69 16 Total: -1.00 -72.82 395.65 0.58 -72.24 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: 0.20 Total: 31.80 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 6.41 Total: 18.15 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -7.97 Total: -114.35 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.09 Total: -52.51 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.82 0.58 -72.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188845545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.418 kcal (2) G-P(sol) polarization free energy of solvation -72.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds