Wall clock time and date at job start Tue Mar 31 2020 18:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00425 * 2 1 4 4 C 1.50701 * 109.47248 * 293.95808 * 3 2 1 5 5 O 1.21295 * 119.99905 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00144 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99795 * 180.02562 * 6 4 3 8 8 H 1.07998 * 120.00404 * 359.97438 * 7 6 4 9 9 C 1.38956 * 119.99536 * 180.02562 * 7 6 4 10 10 N 1.31404 * 120.00385 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99489 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47409 * 60.00028 * 11 9 7 13 13 H 1.48503 * 109.46779 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47616 * 299.99583 * 11 9 7 15 15 C 1.46899 * 111.00235 * 123.95964 * 2 1 3 16 16 H 1.09003 * 110.91489 * 292.13819 * 15 2 1 17 17 C 1.55156 * 111.00644 * 168.24110 * 15 2 1 18 18 C 1.54315 * 102.86146 * 206.22528 * 17 15 2 19 19 N 1.47026 * 107.27598 * 22.52861 * 18 17 15 20 20 C 1.34773 * 125.64687 * 180.96971 * 19 18 17 21 21 O 1.21278 * 119.99940 * 184.91415 * 20 19 18 22 22 C 1.50704 * 120.00224 * 4.91300 * 20 19 18 23 23 H 1.09000 * 109.80950 * 326.10727 * 22 20 19 24 24 C 1.53012 * 109.64633 * 86.61578 * 22 20 19 25 25 C 1.50067 * 110.15253 * 169.10185 * 24 22 20 26 26 C 1.29443 * 124.07736 * 342.90616 * 25 24 22 27 27 C 1.50070 * 124.07670 * 0.45021 * 26 25 24 28 28 C 1.53022 * 110.14393 * 342.86523 * 27 26 25 29 29 C 1.47425 * 108.70142 * 0.69947 * 19 18 17 30 30 H 1.09003 * 109.46733 * 296.04500 * 1 2 3 31 31 H 1.09001 * 109.47495 * 56.04258 * 1 2 3 32 32 H 1.09002 * 109.47270 * 176.04542 * 1 2 3 33 33 H 1.09006 * 109.46658 * 53.95283 * 3 2 1 34 34 H 1.09002 * 109.47430 * 173.95586 * 3 2 1 35 35 H 0.96994 * 120.00092 * 359.97438 * 6 4 3 36 36 H 0.96995 * 120.00214 * 180.02562 * 10 9 7 37 37 H 1.08999 * 110.71876 * 324.78171 * 17 15 2 38 38 H 1.08998 * 110.71976 * 88.05929 * 17 15 2 39 39 H 1.09001 * 109.99054 * 263.04478 * 18 17 15 40 40 H 1.09005 * 109.77300 * 141.87980 * 18 17 15 41 41 H 1.08998 * 109.33949 * 48.90504 * 24 22 20 42 42 H 1.08997 * 109.25679 * 289.25058 * 24 22 20 43 43 H 1.08005 * 117.95894 * 162.88552 * 25 24 22 44 44 H 1.08001 * 117.95916 * 180.42178 * 26 25 24 45 45 H 1.08993 * 109.35978 * 222.66031 * 27 26 25 46 46 H 1.09002 * 109.24735 * 103.00000 * 27 26 25 47 47 H 1.09004 * 109.64361 * 169.11866 * 28 27 26 48 48 H 1.09000 * 109.64491 * 289.75359 * 28 27 26 49 49 H 1.09000 * 110.36512 * 94.94156 * 29 19 18 50 50 H 1.09004 * 110.36285 * 217.26492 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0053 1.4454 -2.1411 6 7 2.0181 3.3202 -1.5232 7 6 1.6914 3.9351 -2.7043 8 1 1.1290 3.3993 -3.4546 9 6 2.0849 5.2474 -2.9363 10 7 2.7695 5.8993 -2.0236 11 14 1.6404 6.0850 -4.5457 12 1 0.1631 6.1219 -4.6931 13 1 2.1721 7.4715 -4.5454 14 1 2.2320 5.3277 -5.6778 15 6 1.9954 -0.7661 1.1375 16 1 1.7767 -0.2635 2.0797 17 6 3.5186 -1.0171 0.9817 18 6 3.7387 -2.3097 1.7954 19 7 2.4439 -3.0018 1.8743 20 6 2.2118 -4.1626 2.5184 21 8 1.1224 -4.6902 2.4436 22 6 3.3059 -4.8051 3.3316 23 1 4.2726 -4.6159 2.8649 24 6 3.2984 -4.2299 4.7495 25 6 4.1957 -5.0384 5.6402 26 6 4.6170 -6.2291 5.3568 27 6 4.2751 -6.9637 4.0937 28 6 3.0629 -6.3171 3.4198 29 6 1.4403 -2.2122 1.1375 30 1 -0.3633 0.4512 0.9234 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5611 1.9273 0.8310 34 1 3.0798 1.3443 0.1082 35 1 2.5228 3.8016 -0.8492 36 1 3.0439 6.8154 -2.1854 37 1 3.7795 -1.1673 -0.0659 38 1 4.0908 -0.1934 1.4085 39 1 4.0894 -2.0639 2.7977 40 1 4.4677 -2.9436 1.2904 41 1 2.2823 -4.2533 5.1432 42 1 3.6512 -3.1990 4.7211 43 1 4.5096 -4.5993 6.5757 44 1 5.2548 -6.7245 6.0740 45 1 4.0452 -8.0024 4.3307 46 1 5.1274 -6.9279 3.4152 47 1 2.9388 -6.7272 2.4175 48 1 2.1682 -6.5104 4.0115 49 1 1.3424 -2.5811 0.1165 50 1 0.4785 -2.2494 1.6491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188845547.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:10 Heat of formation + Delta-G solvation = -51.031590 kcal Electronic energy + Delta-G solvation = -28950.446975 eV Core-core repulsion = 24977.613439 eV Total energy + Delta-G solvation = -3972.833535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68529 -39.12586 -38.17368 -37.36410 -35.48699 -33.84536 -31.94502 -31.26733 -31.23729 -30.70387 -29.17919 -27.49407 -25.58033 -24.52682 -23.69146 -22.99578 -22.45641 -20.28487 -19.46635 -19.09207 -18.32033 -17.86617 -17.44609 -16.73993 -16.35505 -15.94144 -15.53636 -14.94785 -14.73438 -14.49140 -14.31067 -14.16041 -14.06135 -13.71351 -13.61145 -13.56688 -13.40826 -12.91348 -12.86072 -12.83164 -12.63237 -12.43650 -12.21938 -11.89835 -11.52585 -11.45641 -11.33776 -11.17837 -11.13867 -10.99251 -10.93944 -10.78836 -10.76457 -10.44985 -10.22569 -9.85899 -9.48047 -9.39082 -8.82780 -8.48543 -8.00688 -7.90874 -6.43024 -3.83790 1.89578 2.42066 2.71362 3.19210 3.25078 3.29425 3.88537 3.92309 4.05611 4.21883 4.30698 4.34100 4.49380 4.51833 4.75155 4.81926 4.88365 4.91821 5.03326 5.05050 5.12403 5.15925 5.17126 5.25301 5.27575 5.34086 5.47710 5.52167 5.55961 5.59770 5.63768 5.69819 5.77424 5.80802 5.85826 5.87759 5.92748 5.94900 6.05967 6.12332 6.24393 6.26624 6.53448 6.54272 7.17499 7.32464 7.33545 7.53939 7.97349 8.04838 8.60387 9.16857 9.52877 10.04773 10.74603 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031846 B = 0.001905 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.021338 B =14696.925484 C =15131.580672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.577 6.577 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.931 3.069 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.126 4.126 18 C 0.102 3.898 19 N -0.617 5.617 20 C 0.534 3.466 21 O -0.539 6.539 22 C -0.102 4.102 23 H 0.093 0.907 24 C -0.078 4.078 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.092 4.092 28 C -0.101 4.101 29 C 0.116 3.884 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -19.106 16.260 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.164 4.164 18 C -0.021 4.021 19 N -0.352 5.352 20 C 0.322 3.678 21 O -0.416 6.416 22 C -0.124 4.124 23 H 0.111 0.889 24 C -0.115 4.115 25 C -0.171 4.171 26 C -0.173 4.173 27 C -0.129 4.129 28 C -0.139 4.139 29 C -0.007 4.007 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.687 -19.893 15.250 25.703 hybrid contribution 0.060 1.382 0.493 1.469 sum 5.747 -18.511 15.744 24.971 Atomic orbital electron populations 1.22587 0.86364 1.02261 1.01657 1.61625 1.08843 1.12953 1.39664 1.21870 1.00777 0.88587 0.97278 1.19697 0.85535 0.82958 0.88901 1.90493 1.43879 1.64636 1.47072 1.41852 1.49438 1.10716 1.18034 1.19648 1.33001 0.95447 0.94764 0.87951 1.25255 0.96798 0.96650 0.99218 1.69595 1.37995 1.12288 1.34464 0.85921 0.78909 0.77911 0.81496 1.19933 1.21003 1.19886 1.22789 0.94900 0.93406 0.93018 0.92734 1.22746 0.95647 0.96061 1.01994 1.22100 0.85635 0.93931 1.00453 1.48491 1.11419 1.22524 1.52749 1.20290 0.89325 0.79260 0.78897 1.90707 1.25919 1.62094 1.62875 1.21356 0.98065 0.96955 0.95986 0.88875 1.20339 1.00245 0.99012 0.91939 1.21970 0.99280 0.96049 0.99820 1.22092 1.00696 0.96135 0.98386 1.20498 0.98043 0.99306 0.95077 1.21460 0.98554 0.92207 1.01693 1.22216 0.91743 0.89328 0.97396 0.96614 0.88295 0.91919 0.93418 0.89285 0.77518 0.91829 0.88830 0.89838 0.91276 0.91055 0.90178 0.90486 0.87512 0.87798 0.90582 0.90693 0.91111 0.90624 0.90013 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.93 60.06 0.54 0.84 16 2 N -0.51 -8.02 4.40 -233.75 -1.03 -9.04 16 3 C 0.05 0.78 5.36 -4.98 -0.03 0.76 16 4 C 0.44 10.15 7.47 -10.99 -0.08 10.06 16 5 O -0.58 -15.15 13.91 5.54 0.08 -15.07 16 6 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 10 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 11 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.07 0.84 2.71 -65.57 -0.18 0.66 16 16 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 17 C -0.13 -1.26 5.62 -24.90 -0.14 -1.40 16 18 C 0.10 0.86 6.09 -3.07 -0.02 0.84 16 19 N -0.62 -6.84 3.33 -170.52 -0.57 -7.41 16 20 C 0.53 6.35 6.93 -10.99 -0.08 6.27 16 21 O -0.54 -8.45 16.56 5.56 0.09 -8.36 16 22 C -0.10 -0.87 2.14 -91.56 -0.20 -1.07 16 23 H 0.09 0.67 7.28 -51.93 -0.38 0.30 16 24 C -0.08 -0.59 5.42 -28.18 -0.15 -0.74 16 25 C -0.15 -1.03 9.80 -35.90 -0.35 -1.38 16 26 C -0.16 -0.99 9.80 -35.90 -0.35 -1.35 16 27 C -0.09 -0.58 6.12 -28.18 -0.17 -0.76 16 28 C -0.10 -0.85 4.73 -26.52 -0.13 -0.98 16 29 C 0.12 1.45 5.05 -2.53 -0.01 1.44 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 32 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 35 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 0.72 7.91 -51.93 -0.41 0.31 16 39 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 40 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 41 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 43 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 49 H 0.08 1.14 8.11 -51.93 -0.42 0.71 16 50 H 0.08 0.99 7.98 -51.93 -0.41 0.58 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -32.24 395.83 -9.75 -41.99 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.34 Total: 8.19 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.59 Total: 5.35 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.93 Total: -53.88 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.24 -9.75 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188845547.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.046 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds