Wall clock time and date at job start Tue Mar 31 2020 18:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 111.00051 * 2 1 4 4 C 1.50693 * 109.46830 * 293.95202 * 3 2 1 5 5 O 1.21291 * 120.00645 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99690 * 180.02562 * 4 3 2 7 7 C 1.37101 * 119.99735 * 179.72576 * 6 4 3 8 8 H 1.07997 * 120.00254 * 359.97438 * 7 6 4 9 9 C 1.38949 * 119.99614 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00345 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46921 * 60.00112 * 11 9 7 13 13 H 1.48502 * 109.47213 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47304 * 300.00307 * 11 9 7 15 15 C 1.46897 * 110.99972 * 123.95158 * 2 1 3 16 16 H 1.09000 * 110.88773 * 292.17069 * 15 2 1 17 17 C 1.55153 * 111.00724 * 168.24262 * 15 2 1 18 18 C 1.54328 * 102.94588 * 206.42351 * 17 15 2 19 19 N 1.47022 * 107.26656 * 22.19449 * 18 17 15 20 20 C 1.34783 * 125.64403 * 181.02353 * 19 18 17 21 21 O 1.21284 * 119.99485 * 174.79623 * 20 19 18 22 22 C 1.50697 * 120.00035 * 354.79699 * 20 19 18 23 23 H 1.08999 * 109.64283 * 33.84991 * 22 20 19 24 24 C 1.53024 * 109.63949 * 273.42457 * 22 20 19 25 25 C 1.50167 * 110.09609 * 191.09491 * 24 22 20 26 26 C 1.29443 * 124.14223 * 16.72435 * 25 24 22 27 27 C 1.50065 * 124.07867 * 359.75685 * 26 25 24 28 28 C 1.53018 * 110.14906 * 17.12942 * 27 26 25 29 29 C 1.47423 * 108.70591 * 1.05567 * 19 18 17 30 30 H 1.08997 * 109.47205 * 60.00165 * 1 2 3 31 31 H 1.09000 * 109.47040 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47263 * 300.00155 * 1 2 3 33 33 H 1.09000 * 109.46989 * 173.94915 * 3 2 1 34 34 H 1.08998 * 109.46918 * 53.95433 * 3 2 1 35 35 H 0.96996 * 120.00392 * 359.97438 * 6 4 3 36 36 H 0.97003 * 119.99787 * 179.97438 * 10 9 7 37 37 H 1.09006 * 110.72156 * 324.78877 * 17 15 2 38 38 H 1.09001 * 110.72369 * 88.06130 * 17 15 2 39 39 H 1.08992 * 109.88286 * 262.77585 * 18 17 15 40 40 H 1.09002 * 110.01127 * 141.67672 * 18 17 15 41 41 H 1.09002 * 109.36529 * 311.09005 * 24 22 20 42 42 H 1.09002 * 109.35602 * 70.67399 * 24 22 20 43 43 H 1.07996 * 117.88984 * 196.92345 * 25 24 22 44 44 H 1.08001 * 117.95889 * 179.73459 * 26 25 24 45 45 H 1.09011 * 109.35842 * 256.92463 * 27 26 25 46 46 H 1.09002 * 109.36013 * 137.33949 * 27 26 25 47 47 H 1.08994 * 109.64609 * 190.87687 * 28 27 26 48 48 H 1.09006 * 109.81554 * 70.35211 * 28 27 26 49 49 H 1.09002 * 110.36554 * 217.03332 * 29 19 18 50 50 H 1.09005 * 110.36217 * 94.71375 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0055 1.4453 -2.1412 6 7 2.0189 3.3198 -1.5237 7 6 1.6976 3.9326 -2.7073 8 1 1.1388 3.3954 -3.4593 9 6 2.0910 5.2449 -2.9393 10 7 2.7705 5.8988 -2.0241 11 14 1.6539 6.0797 -4.5523 12 1 0.1774 6.1150 -4.7071 13 1 2.1854 7.4663 -4.5520 14 1 2.2518 5.3211 -5.6802 15 6 1.9954 -0.7659 1.1376 16 1 1.7759 -0.2632 2.0795 17 6 3.5185 -1.0169 0.9820 18 6 3.7399 -2.3123 1.7911 19 7 2.4440 -3.0016 1.8746 20 6 2.2121 -4.1632 2.5176 21 8 1.0817 -4.5945 2.6017 22 6 3.3574 -4.9259 3.1321 23 1 4.1067 -4.2263 3.5025 24 6 3.9858 -5.8445 2.0820 25 6 4.9409 -6.8000 2.7375 26 6 4.9638 -7.0473 4.0079 27 6 4.0417 -6.4096 5.0054 28 6 2.8400 -5.7883 4.2904 29 6 1.4403 -2.2121 1.1378 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.0797 1.3444 0.1083 34 1 1.5611 1.9273 0.8309 35 1 2.5242 3.8010 -0.8500 36 1 3.0454 6.8148 -2.1863 37 1 3.7796 -1.1672 -0.0656 38 1 4.0908 -0.1932 1.4087 39 1 4.0950 -2.0680 2.7922 40 1 4.4662 -2.9486 1.2852 41 1 3.2006 -6.4101 1.5802 42 1 4.5195 -5.2415 1.3474 43 1 5.6558 -7.3104 2.1092 44 1 5.6916 -7.7571 4.3726 45 1 4.5795 -5.6331 5.5496 46 1 3.6924 -7.1652 5.7092 47 1 2.2796 -5.1664 4.9884 48 1 2.1942 -6.5754 3.9011 49 1 0.4784 -2.2493 1.6492 50 1 1.3425 -2.5811 0.1167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188845548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:12 Heat of formation + Delta-G solvation = -72.543490 kcal Electronic energy + Delta-G solvation = -28935.992974 eV Core-core repulsion = 24962.226613 eV Total energy + Delta-G solvation = -3973.766361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56364 -40.44781 -39.38310 -38.30935 -36.75038 -35.76569 -33.25974 -32.70324 -31.83363 -31.47598 -30.32548 -28.75016 -27.05912 -25.85157 -24.55809 -23.88888 -23.19432 -21.42964 -20.89939 -20.19727 -19.81259 -18.92272 -18.26523 -17.87911 -17.53911 -16.97790 -16.59185 -16.33319 -16.02150 -15.97401 -15.61975 -15.26874 -15.11342 -14.80125 -14.68270 -14.48151 -14.19860 -14.10519 -13.83558 -13.71483 -13.53779 -13.43085 -13.25640 -13.17492 -13.07245 -12.93860 -12.61525 -12.42078 -12.25105 -12.12737 -12.00273 -11.91529 -11.79205 -11.71229 -11.43435 -11.36780 -10.74211 -10.27227 -9.97703 -9.87039 -9.72203 -9.26687 -8.44355 -5.92426 1.40749 1.40984 1.42793 1.53074 1.53536 1.82423 2.08466 2.30250 2.77016 3.21988 3.24154 3.43258 3.60914 3.64808 3.74379 3.82199 4.04309 4.14446 4.17109 4.28583 4.29536 4.32759 4.38460 4.39280 4.45711 4.53092 4.56809 4.57540 4.61933 4.67089 4.70170 4.77395 4.85749 4.90602 4.96647 5.02929 5.06267 5.11503 5.20529 5.24445 5.26009 5.34768 5.43352 5.77484 5.84513 6.04304 6.06704 6.17672 6.45925 6.63691 7.06399 7.15900 7.59716 8.16043 8.72657 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.001898 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.281438 B =14752.438211 C =15088.068325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.523 5.523 3 C 0.060 3.940 4 C 0.442 3.558 5 O -0.615 6.615 6 N -0.574 5.574 7 C -0.331 4.331 8 H 0.078 0.922 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.274 1.274 13 H -0.271 1.271 14 H -0.272 1.272 15 C 0.072 3.928 16 H 0.067 0.933 17 C -0.122 4.122 18 C 0.102 3.898 19 N -0.616 5.616 20 C 0.529 3.471 21 O -0.587 6.587 22 C -0.094 4.094 23 H 0.116 0.884 24 C -0.077 4.077 25 C -0.162 4.162 26 C -0.156 4.156 27 C -0.089 4.089 28 C -0.101 4.101 29 C 0.117 3.883 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.236 -20.071 16.466 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.211 5.211 7 C -0.461 4.461 8 H 0.096 0.904 9 C -0.212 4.212 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.037 4.037 16 H 0.085 0.915 17 C -0.160 4.160 18 C -0.020 4.020 19 N -0.350 5.350 20 C 0.319 3.681 21 O -0.467 6.467 22 C -0.115 4.115 23 H 0.134 0.866 24 C -0.114 4.114 25 C -0.180 4.180 26 C -0.173 4.173 27 C -0.126 4.126 28 C -0.140 4.140 29 C -0.006 4.006 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.455 -20.797 15.565 27.318 hybrid contribution -0.705 1.278 -0.104 1.463 sum 7.751 -19.520 15.461 26.079 Atomic orbital electron populations 1.22437 0.87020 1.02040 1.00837 1.61561 1.08540 1.12590 1.42066 1.21737 1.02524 0.88860 0.93967 1.20758 0.83717 0.82209 0.90410 1.90472 1.45152 1.65370 1.49113 1.41910 1.50161 1.11606 1.17467 1.19595 1.34600 0.96391 0.95510 0.90413 1.25987 0.96344 0.96624 1.02263 1.69659 1.38228 1.12597 1.35557 0.85028 0.78524 0.77333 0.77688 1.19918 1.19536 1.19777 1.22794 0.96480 0.92354 0.92055 0.91509 1.22763 0.93758 0.97664 1.01821 1.22305 0.84479 0.93162 1.02021 1.48580 1.12081 1.22197 1.52115 1.20974 0.90571 0.79480 0.77070 1.90681 1.25997 1.68848 1.61212 1.21379 0.95189 0.97661 0.97256 0.86581 1.20342 0.97818 0.96356 0.96883 1.22038 0.99739 0.99662 0.96516 1.22268 0.99895 1.00339 0.94839 1.20501 0.94371 1.00478 0.97202 1.21434 0.97955 0.98674 0.95894 1.22054 0.92167 0.90082 0.96329 0.92110 0.90880 0.95278 0.86496 0.91484 0.76975 0.91355 0.90169 0.87590 0.88628 0.89052 0.92105 0.89295 0.86336 0.86231 0.89239 0.89718 0.91839 0.92722 0.91819 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 8.98 127.69 1.15 1.94 16 2 N -0.52 -16.14 4.40 -893.46 -3.93 -20.07 16 3 C 0.06 1.95 5.36 85.55 0.46 2.41 16 4 C 0.44 20.42 7.51 87.65 0.66 21.08 16 5 O -0.62 -33.35 13.89 -3.06 -0.04 -33.39 16 6 N -0.57 -28.74 5.29 -306.99 -1.62 -30.36 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 9 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 10 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 11 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 15 C 0.07 1.64 2.71 46.31 0.13 1.76 16 16 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 17 C -0.12 -2.06 5.61 31.78 0.18 -1.89 16 18 C 0.10 1.37 6.12 86.73 0.53 1.90 16 19 N -0.62 -12.74 3.33 -811.78 -2.70 -15.44 16 20 C 0.53 12.24 6.93 87.66 0.61 12.85 16 21 O -0.59 -18.91 16.50 -3.04 -0.05 -18.96 16 22 C -0.09 -1.45 2.14 -11.40 -0.02 -1.47 16 23 H 0.12 1.25 7.21 -2.39 -0.02 1.24 16 24 C -0.08 -1.08 5.44 29.69 0.16 -0.92 16 25 C -0.16 -1.86 9.80 27.07 0.27 -1.59 16 26 C -0.16 -1.61 9.80 27.04 0.27 -1.34 16 27 C -0.09 -0.91 6.12 29.66 0.18 -0.73 16 28 C -0.10 -1.60 4.73 30.73 0.15 -1.45 16 29 C 0.12 2.88 5.08 86.86 0.44 3.32 16 30 H 0.06 2.46 5.88 -2.39 -0.01 2.45 16 31 H 0.07 2.14 6.76 -2.39 -0.02 2.13 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 3.18 7.01 -2.39 -0.02 3.16 16 34 H 0.07 1.96 8.12 -2.39 -0.02 1.95 16 35 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 36 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 1.36 7.91 -2.39 -0.02 1.34 16 39 H 0.10 0.84 7.92 -2.39 -0.02 0.82 16 40 H 0.09 0.93 7.74 -2.39 -0.02 0.91 16 41 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 42 H 0.09 1.04 7.74 -2.39 -0.02 1.02 16 43 H 0.12 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.12 0.88 8.06 -2.91 -0.02 0.86 16 45 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.05 1.08 8.09 -2.38 -0.02 1.06 16 49 H 0.06 1.72 7.79 -2.39 -0.02 1.70 16 50 H 0.06 1.81 8.12 -2.38 -0.02 1.79 16 Total: -1.00 -72.46 395.57 0.58 -71.88 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.20 Total: 32.30 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 6.42 Total: 17.94 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -7.97 Total: -114.40 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.09 Total: -52.36 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -72.46 0.58 -71.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188845548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.667 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds