Wall clock time and date at job start Tue Mar 31 2020 18:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00183 * 2 1 4 4 C 1.50700 * 109.47493 * 293.95805 * 3 2 1 5 5 O 1.21290 * 119.99853 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00348 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00095 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00257 * 0.02562 * 7 6 4 9 9 C 1.38956 * 119.99864 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99896 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47512 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47173 * 120.00334 * 11 9 7 14 14 H 1.48499 * 109.47425 * 240.00380 * 11 9 7 15 15 C 1.46899 * 110.99878 * 123.95846 * 2 1 3 16 16 H 1.09002 * 110.88599 * 295.34233 * 15 2 1 17 17 C 1.55154 * 111.00491 * 171.46211 * 15 2 1 18 18 C 1.54320 * 102.94515 * 206.38229 * 17 15 2 19 19 N 1.47021 * 107.26834 * 22.19503 * 18 17 15 20 20 C 1.34781 * 125.64963 * 181.10366 * 19 18 17 21 21 O 1.21281 * 120.00118 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99540 * 359.97438 * 20 19 18 23 23 H 1.08994 * 115.53267 * 34.50046 * 22 20 19 24 24 C 1.53008 * 117.45809 * 179.97438 * 22 20 19 25 25 H 1.09003 * 119.29633 * 356.29171 * 24 22 20 26 26 C 1.54264 * 118.19742 * 202.14708 * 24 22 20 27 27 C 1.54886 * 104.19496 * 272.21192 * 26 24 22 28 28 C 1.54882 * 102.75177 * 37.94283 * 27 26 24 29 29 C 1.53004 * 117.45652 * 249.04061 * 22 20 19 30 30 H 1.08993 * 119.29938 * 3.71006 * 29 22 20 31 31 C 1.47425 * 108.70661 * 1.06042 * 19 18 17 32 32 H 1.09000 * 109.47259 * 296.04590 * 1 2 3 33 33 H 1.09001 * 109.47028 * 56.04562 * 1 2 3 34 34 H 1.09001 * 109.47345 * 176.03956 * 1 2 3 35 35 H 1.09005 * 109.47303 * 53.95583 * 3 2 1 36 36 H 1.08998 * 109.47170 * 173.95359 * 3 2 1 37 37 H 0.96999 * 119.99785 * 359.97438 * 6 4 3 38 38 H 0.97000 * 120.00045 * 179.97438 * 10 9 7 39 39 H 1.09008 * 110.72156 * 324.75090 * 17 15 2 40 40 H 1.09004 * 110.71920 * 87.84265 * 17 15 2 41 41 H 1.09001 * 109.88340 * 141.60601 * 18 17 15 42 42 H 1.08995 * 109.88734 * 262.77895 * 18 17 15 43 43 H 1.08996 * 110.48484 * 30.89294 * 26 24 22 44 44 H 1.08997 * 110.48235 * 153.39924 * 26 24 22 45 45 H 1.09007 * 110.75473 * 156.26005 * 27 26 24 46 46 H 1.08996 * 110.75676 * 279.43987 * 27 26 24 47 47 H 1.09008 * 110.48126 * 80.73579 * 28 27 26 48 48 H 1.09000 * 110.49024 * 203.24226 * 28 27 26 49 49 H 1.08999 * 110.36494 * 217.03587 * 31 19 18 50 50 H 1.08994 * 110.36944 * 94.70434 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4454 -2.1411 6 7 2.0189 3.3199 -1.5236 7 6 1.6932 3.9345 -2.7050 8 1 1.1301 3.3989 -3.4550 9 6 2.0866 5.2468 -2.9370 10 7 2.7713 5.8986 -2.0242 11 14 1.6421 6.0845 -4.5463 12 1 0.8738 5.1423 -5.3992 13 1 0.8150 7.2858 -4.2672 14 1 2.8837 6.4914 -5.2520 15 6 1.9954 -0.7661 1.1375 16 1 1.7277 -0.2926 2.0821 17 6 3.5320 -0.9477 1.0223 18 6 3.7866 -2.2483 1.8130 19 7 2.5202 -2.9946 1.8450 20 6 2.3207 -4.1771 2.4601 21 8 1.2290 -4.7041 2.4216 22 6 3.4541 -4.8445 3.1956 23 1 4.1524 -4.1714 3.6928 24 6 3.1630 -6.1850 3.8734 25 1 2.1476 -6.5813 3.8577 26 6 4.0824 -6.6327 5.0284 27 6 5.2377 -7.3864 4.3238 28 6 5.4605 -6.5479 3.0408 29 6 4.0218 -6.1330 2.5970 30 1 3.6392 -6.4910 1.6413 31 6 1.5045 -2.2347 1.0938 32 1 -0.3634 0.4512 0.9233 33 1 -0.3633 0.5740 -0.8524 34 1 -0.3634 -1.0252 -0.0710 35 1 1.5612 1.9273 0.8310 36 1 3.0797 1.3443 0.1082 37 1 2.5243 3.8010 -0.8499 38 1 3.0462 6.8146 -2.1863 39 1 3.8294 -1.0654 -0.0198 40 1 4.0550 -0.1072 1.4786 41 1 4.5536 -2.8411 1.3145 42 1 4.1016 -2.0092 2.8286 43 1 4.4652 -5.7670 5.5687 44 1 3.5473 -7.2981 5.7059 45 1 6.1335 -7.3877 4.9449 46 1 4.9398 -8.4052 4.0761 47 1 6.0660 -5.6684 3.2603 48 1 5.9341 -7.1526 2.2673 49 1 0.5309 -2.3237 1.5757 50 1 1.4524 -2.5867 0.0636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189547292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:29 Heat of formation + Delta-G solvation = -33.801106 kcal Electronic energy + Delta-G solvation = -28697.069661 eV Core-core repulsion = 24724.983296 eV Total energy + Delta-G solvation = -3972.086365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78278 -39.47761 -38.45597 -37.48284 -35.47545 -33.84482 -32.24776 -31.26722 -30.92485 -29.31106 -28.56978 -27.53745 -25.72785 -24.62826 -23.27058 -22.60210 -21.08881 -20.25036 -20.09083 -19.39977 -19.05864 -17.86322 -17.68065 -16.77912 -16.17454 -15.95045 -15.44652 -15.04207 -14.76582 -14.62797 -14.47172 -14.12723 -13.88502 -13.59940 -13.58755 -13.52100 -13.28604 -12.91336 -12.85722 -12.63652 -12.21567 -11.90581 -11.84517 -11.70311 -11.55458 -11.52500 -11.44265 -11.27821 -11.16727 -11.02578 -10.95573 -10.80007 -10.49629 -10.35105 -10.24738 -10.23682 -9.91601 -9.50079 -8.82890 -8.48729 -8.00696 -7.90830 -6.43299 -3.83910 2.23061 2.64431 3.15307 3.26180 3.33274 3.36430 3.88118 3.90599 3.95832 4.22025 4.28813 4.32650 4.34577 4.51103 4.70399 4.73883 4.79835 4.85742 4.97943 5.01821 5.05442 5.13194 5.16116 5.18243 5.26886 5.29494 5.38340 5.42009 5.58796 5.60192 5.63481 5.65279 5.67170 5.69968 5.78597 5.85974 5.86693 5.88413 5.93956 5.97548 6.05993 6.12493 6.26547 6.53521 7.17543 7.32030 7.33363 7.54264 7.97288 8.05218 8.60290 9.17005 9.52925 10.04694 10.74503 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.001844 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.047123 B =15183.182560 C =15612.110173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.127 4.127 18 C 0.104 3.896 19 N -0.613 5.613 20 C 0.559 3.441 21 O -0.541 6.541 22 C -0.160 4.160 23 H 0.120 0.880 24 C -0.132 4.132 25 H 0.121 0.879 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.095 4.095 29 C -0.136 4.136 30 H 0.117 0.883 31 C 0.117 3.883 32 H 0.016 0.984 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 -20.370 15.484 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.086 4.086 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.166 4.166 18 C -0.019 4.019 19 N -0.347 5.347 20 C 0.348 3.652 21 O -0.418 6.418 22 C -0.181 4.181 23 H 0.138 0.862 24 C -0.151 4.151 25 H 0.139 0.861 26 C -0.134 4.134 27 C -0.161 4.161 28 C -0.132 4.132 29 C -0.155 4.155 30 H 0.135 0.865 31 C -0.006 4.006 32 H 0.034 0.966 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.730 -21.167 14.487 26.518 hybrid contribution -0.086 1.484 0.392 1.537 sum 6.643 -19.683 14.879 25.552 Atomic orbital electron populations 1.22586 0.86342 1.02256 1.01669 1.61614 1.08854 1.12948 1.39673 1.21873 1.00812 0.88585 0.97285 1.19700 0.85501 0.82953 0.88893 1.90493 1.43857 1.64619 1.47069 1.41866 1.49435 1.10764 1.18048 1.19749 1.32831 0.95444 0.94714 0.87836 1.25257 0.96838 0.96651 0.99225 1.69615 1.38127 1.12213 1.34385 0.85805 0.78208 0.79025 0.81342 1.19215 1.20799 1.20758 1.22782 0.94940 0.93346 0.93043 0.92734 1.22757 0.95463 0.96149 1.02187 1.22067 0.86354 0.92939 1.00537 1.48330 1.12873 1.20566 1.52965 1.19245 0.88490 0.79398 0.78103 1.90705 1.26094 1.63654 1.61377 1.22330 0.99842 0.91779 1.04158 0.86238 1.23266 1.00574 0.97070 0.94179 0.86093 1.22000 0.95359 0.99933 0.96112 1.22678 0.98133 0.99297 0.96013 1.22330 0.93847 0.99745 0.97326 1.23693 0.95735 0.97651 0.98403 0.86466 1.22212 0.91661 0.89609 0.97085 0.96588 0.88282 0.91949 0.93409 0.89244 0.77523 0.91940 0.88858 0.89786 0.90884 0.91385 0.91215 0.90798 0.91085 0.91075 0.91024 0.90850 0.90524 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.97 60.07 0.54 0.85 16 2 N -0.51 -8.09 4.40 -233.75 -1.03 -9.12 16 3 C 0.05 0.78 5.34 -4.98 -0.03 0.75 16 4 C 0.44 10.18 7.47 -10.98 -0.08 10.10 16 5 O -0.58 -15.18 13.91 5.55 0.08 -15.10 16 6 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 11 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 C 0.07 0.86 2.71 -65.56 -0.18 0.68 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.13 -1.30 5.47 -24.90 -0.14 -1.44 16 18 C 0.10 0.92 6.31 -3.07 -0.02 0.90 16 19 N -0.61 -7.12 3.33 -170.52 -0.57 -7.68 16 20 C 0.56 7.04 7.63 -10.98 -0.08 6.96 16 21 O -0.54 -8.81 16.58 5.56 0.09 -8.71 16 22 C -0.16 -1.46 5.05 -91.77 -0.46 -1.92 16 23 H 0.12 0.88 7.68 -51.93 -0.40 0.48 16 24 C -0.13 -1.14 6.35 -89.47 -0.57 -1.70 16 25 H 0.12 1.23 7.78 -51.93 -0.40 0.82 16 26 C -0.10 -0.59 6.62 -25.08 -0.17 -0.76 16 27 C -0.12 -0.65 6.91 -24.74 -0.17 -0.82 16 28 C -0.10 -0.55 6.65 -24.04 -0.16 -0.71 16 29 C -0.14 -1.10 6.81 -88.43 -0.60 -1.70 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 31 C 0.12 1.50 5.22 -2.53 -0.01 1.49 16 32 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 34 H 0.06 0.91 7.06 -51.93 -0.37 0.54 16 35 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 36 H 0.09 1.34 6.86 -51.93 -0.36 0.99 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.08 0.74 7.88 -51.93 -0.41 0.33 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 50 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -32.43 398.28 -10.54 -42.97 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.39 Total: 8.51 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.37 Total: 4.83 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.93 Total: -54.32 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.43 -10.54 -42.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.173 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds