Wall clock time and date at job start Tue Mar 31 2020 18:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00183 * 2 1 4 4 C 1.50700 * 109.47493 * 293.95805 * 3 2 1 5 5 O 1.21290 * 119.99853 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00348 * 180.02562 * 4 3 2 7 7 C 1.37090 * 120.00095 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00257 * 0.02562 * 7 6 4 9 9 C 1.38956 * 119.99864 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99896 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47512 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47173 * 120.00334 * 11 9 7 14 14 H 1.48499 * 109.47425 * 240.00380 * 11 9 7 15 15 C 1.46899 * 110.99878 * 123.95846 * 2 1 3 16 16 H 1.09002 * 110.88599 * 295.34233 * 15 2 1 17 17 C 1.55154 * 111.00491 * 171.46211 * 15 2 1 18 18 C 1.54320 * 102.94515 * 206.38229 * 17 15 2 19 19 N 1.47021 * 107.26834 * 22.19503 * 18 17 15 20 20 C 1.34781 * 125.64963 * 181.10366 * 19 18 17 21 21 O 1.21281 * 120.00118 * 179.97438 * 20 19 18 22 22 C 1.50700 * 119.99540 * 359.97438 * 20 19 18 23 23 H 1.08994 * 115.53267 * 34.50046 * 22 20 19 24 24 C 1.53008 * 117.45809 * 179.97438 * 22 20 19 25 25 H 1.09003 * 119.29633 * 356.29171 * 24 22 20 26 26 C 1.54264 * 118.19742 * 202.14708 * 24 22 20 27 27 C 1.54886 * 104.19496 * 272.21192 * 26 24 22 28 28 C 1.54882 * 102.75177 * 37.94283 * 27 26 24 29 29 C 1.53004 * 117.45652 * 249.04061 * 22 20 19 30 30 H 1.08993 * 119.29938 * 3.71006 * 29 22 20 31 31 C 1.47425 * 108.70661 * 1.06042 * 19 18 17 32 32 H 1.09000 * 109.47259 * 296.04590 * 1 2 3 33 33 H 1.09001 * 109.47028 * 56.04562 * 1 2 3 34 34 H 1.09001 * 109.47345 * 176.03956 * 1 2 3 35 35 H 1.09005 * 109.47303 * 53.95583 * 3 2 1 36 36 H 1.08998 * 109.47170 * 173.95359 * 3 2 1 37 37 H 0.96999 * 119.99785 * 359.97438 * 6 4 3 38 38 H 0.97000 * 120.00045 * 179.97438 * 10 9 7 39 39 H 1.09008 * 110.72156 * 324.75090 * 17 15 2 40 40 H 1.09004 * 110.71920 * 87.84265 * 17 15 2 41 41 H 1.09001 * 109.88340 * 141.60601 * 18 17 15 42 42 H 1.08995 * 109.88734 * 262.77895 * 18 17 15 43 43 H 1.08996 * 110.48484 * 30.89294 * 26 24 22 44 44 H 1.08997 * 110.48235 * 153.39924 * 26 24 22 45 45 H 1.09007 * 110.75473 * 156.26005 * 27 26 24 46 46 H 1.08996 * 110.75676 * 279.43987 * 27 26 24 47 47 H 1.09008 * 110.48126 * 80.73579 * 28 27 26 48 48 H 1.09000 * 110.49024 * 203.24226 * 28 27 26 49 49 H 1.08999 * 110.36494 * 217.03587 * 31 19 18 50 50 H 1.08994 * 110.36944 * 94.70434 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4454 -2.1411 6 7 2.0189 3.3199 -1.5236 7 6 1.6932 3.9345 -2.7050 8 1 1.1301 3.3989 -3.4550 9 6 2.0866 5.2468 -2.9370 10 7 2.7713 5.8986 -2.0242 11 14 1.6421 6.0845 -4.5463 12 1 0.8738 5.1423 -5.3992 13 1 0.8150 7.2858 -4.2672 14 1 2.8837 6.4914 -5.2520 15 6 1.9954 -0.7661 1.1375 16 1 1.7277 -0.2926 2.0821 17 6 3.5320 -0.9477 1.0223 18 6 3.7866 -2.2483 1.8130 19 7 2.5202 -2.9946 1.8450 20 6 2.3207 -4.1771 2.4601 21 8 1.2290 -4.7041 2.4216 22 6 3.4541 -4.8445 3.1956 23 1 4.1524 -4.1714 3.6928 24 6 3.1630 -6.1850 3.8734 25 1 2.1476 -6.5813 3.8577 26 6 4.0824 -6.6327 5.0284 27 6 5.2377 -7.3864 4.3238 28 6 5.4605 -6.5479 3.0408 29 6 4.0218 -6.1330 2.5970 30 1 3.6392 -6.4910 1.6413 31 6 1.5045 -2.2347 1.0938 32 1 -0.3634 0.4512 0.9233 33 1 -0.3633 0.5740 -0.8524 34 1 -0.3634 -1.0252 -0.0710 35 1 1.5612 1.9273 0.8310 36 1 3.0797 1.3443 0.1082 37 1 2.5243 3.8010 -0.8499 38 1 3.0462 6.8146 -2.1863 39 1 3.8294 -1.0654 -0.0198 40 1 4.0550 -0.1072 1.4786 41 1 4.5536 -2.8411 1.3145 42 1 4.1016 -2.0092 2.8286 43 1 4.4652 -5.7670 5.5687 44 1 3.5473 -7.2981 5.7059 45 1 6.1335 -7.3877 4.9449 46 1 4.9398 -8.4052 4.0761 47 1 6.0660 -5.6684 3.2603 48 1 5.9341 -7.1526 2.2673 49 1 0.5309 -2.3237 1.5757 50 1 1.4524 -2.5867 0.0636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189547292.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:28 Heat of formation + Delta-G solvation = -55.272630 kcal Electronic energy + Delta-G solvation = -28698.000736 eV Core-core repulsion = 24724.983296 eV Total energy + Delta-G solvation = -3973.017441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63297 -40.57941 -39.79645 -38.64807 -36.76152 -35.77345 -33.26576 -32.87768 -31.83371 -30.45226 -29.05244 -28.84118 -27.11573 -26.06550 -24.44443 -23.41867 -21.67343 -21.31690 -20.90225 -20.68885 -20.13276 -19.80889 -18.55364 -17.92716 -17.55460 -16.96494 -16.61489 -16.34872 -16.02423 -15.90935 -15.45991 -15.32267 -15.23982 -15.08798 -14.73095 -14.21629 -14.04153 -13.98976 -13.80841 -13.70454 -13.60270 -13.44418 -13.08031 -12.95208 -12.62901 -12.43304 -12.39997 -12.27807 -12.24711 -12.12037 -11.97965 -11.92575 -11.82988 -11.68743 -11.44891 -11.16963 -11.03305 -10.66764 -10.27828 -9.97883 -9.76174 -9.27808 -8.45217 -5.93084 1.32611 1.37109 1.42706 1.56216 1.74044 2.07779 2.29664 2.66868 2.76897 3.18278 3.22191 3.41291 3.54826 3.63566 3.69948 3.74907 3.98045 4.03979 4.15140 4.15453 4.23912 4.29404 4.32249 4.37754 4.48039 4.50956 4.52656 4.55641 4.56769 4.66867 4.69050 4.76844 4.83240 4.84747 4.95169 5.01249 5.09126 5.14385 5.20901 5.22806 5.23329 5.24940 5.27792 5.43358 5.50976 5.83829 6.03885 6.16596 6.41497 6.63126 7.01868 7.15616 7.59217 8.15553 8.72326 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031241 B = 0.001844 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.047123 B =15183.182560 C =15612.110173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.060 3.940 4 C 0.442 3.558 5 O -0.615 6.615 6 N -0.574 5.574 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.073 3.927 16 H 0.069 0.931 17 C -0.123 4.123 18 C 0.105 3.895 19 N -0.613 5.613 20 C 0.550 3.450 21 O -0.590 6.590 22 C -0.158 4.158 23 H 0.147 0.853 24 C -0.142 4.142 25 H 0.095 0.905 26 C -0.092 4.092 27 C -0.120 4.120 28 C -0.089 4.089 29 C -0.133 4.133 30 H 0.101 0.899 31 C 0.119 3.881 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -20.271 17.320 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.501 6.501 6 N -0.212 5.212 7 C -0.460 4.460 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.814 3.186 12 H -0.200 1.200 13 H -0.197 1.197 14 H -0.196 1.196 15 C -0.036 4.036 16 H 0.087 0.913 17 C -0.161 4.161 18 C -0.017 4.017 19 N -0.345 5.345 20 C 0.341 3.659 21 O -0.471 6.471 22 C -0.179 4.179 23 H 0.164 0.836 24 C -0.161 4.161 25 H 0.113 0.887 26 C -0.129 4.129 27 C -0.158 4.158 28 C -0.126 4.126 29 C -0.152 4.152 30 H 0.119 0.881 31 C -0.005 4.005 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.136 0.864 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.104 0.896 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.431 -21.054 16.349 28.276 hybrid contribution -0.979 1.380 -0.195 1.703 sum 8.452 -19.675 16.154 26.823 Atomic orbital electron populations 1.22426 0.86972 1.02238 1.00646 1.61528 1.08589 1.12652 1.42115 1.21733 1.02564 0.88808 0.93988 1.20767 0.83688 0.82228 0.90411 1.90477 1.45157 1.65391 1.49115 1.41914 1.50095 1.11563 1.17580 1.19666 1.34247 0.96377 0.95705 0.90458 1.25981 0.96355 0.96626 1.02231 1.69666 1.38177 1.12645 1.35570 0.84907 0.78236 0.77867 0.77546 1.19994 1.19735 1.19595 1.22788 0.96557 0.92101 0.92116 0.91326 1.22784 0.93485 0.97858 1.01988 1.22275 0.85158 0.91993 1.02255 1.48432 1.13621 1.20401 1.52092 1.19938 0.88806 0.79320 0.77826 1.90677 1.28270 1.64919 1.63263 1.22340 0.99036 0.92222 1.04278 0.83576 1.23320 1.00073 0.96820 0.95873 0.88698 1.22023 0.95105 1.00506 0.95265 1.22687 0.98374 0.98904 0.95804 1.22367 0.92075 1.00476 0.97715 1.23782 0.97345 0.96554 0.97549 0.88109 1.22039 0.91893 0.90399 0.96123 0.95035 0.92121 0.91097 0.91369 0.86436 0.76953 0.91354 0.90267 0.87324 0.89269 0.88427 0.90101 0.90456 0.89256 0.91275 0.89601 0.90175 0.91795 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.97 127.69 1.15 1.97 16 2 N -0.52 -16.36 4.40 -893.44 -3.93 -20.29 16 3 C 0.06 1.96 5.34 85.56 0.46 2.41 16 4 C 0.44 20.48 7.47 87.66 0.66 21.13 16 5 O -0.62 -33.55 13.91 -3.06 -0.04 -33.59 16 6 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 7 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 9 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 10 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 11 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 15 C 0.07 1.70 2.71 46.31 0.13 1.82 16 16 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 17 C -0.12 -2.14 5.47 31.78 0.17 -1.97 16 18 C 0.11 1.50 6.31 86.73 0.55 2.04 16 19 N -0.61 -13.47 3.33 -811.80 -2.70 -16.17 16 20 C 0.55 13.71 7.63 87.66 0.67 14.38 16 21 O -0.59 -20.05 16.58 -3.03 -0.05 -20.10 16 22 C -0.16 -2.63 5.05 -11.54 -0.06 -2.68 16 23 H 0.15 1.61 7.68 -2.39 -0.02 1.59 16 24 C -0.14 -2.34 6.35 -10.05 -0.06 -2.40 16 25 H 0.09 2.05 7.78 -2.39 -0.02 2.03 16 26 C -0.09 -0.92 6.62 31.67 0.21 -0.71 16 27 C -0.12 -0.91 6.91 31.88 0.22 -0.69 16 28 C -0.09 -0.78 6.65 32.34 0.22 -0.56 16 29 C -0.13 -1.99 6.81 -9.38 -0.06 -2.06 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 C 0.12 3.04 5.22 86.86 0.45 3.49 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 2.47 5.82 -2.39 -0.01 2.45 16 34 H 0.07 2.13 7.06 -2.39 -0.02 2.12 16 35 H 0.07 1.99 8.12 -2.38 -0.02 1.97 16 36 H 0.12 3.20 6.86 -2.39 -0.02 3.18 16 37 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 38 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.11 1.40 7.88 -2.38 -0.02 1.38 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.10 0.90 7.97 -2.39 -0.02 0.88 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 49 H 0.06 1.78 7.91 -2.39 -0.02 1.76 16 50 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.64 398.28 0.14 -73.50 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: 0.20 Total: 32.60 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 5.97 Total: 18.25 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.97 Total: -115.39 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -0.09 Total: -53.70 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.64 0.14 -73.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547292.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.228 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds