Wall clock time and date at job start Tue Mar 31 2020 18:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 O 1.21294 * 119.99849 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99707 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99927 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00215 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00009 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.47177 * 89.99959 * 11 9 7 13 13 H 1.48505 * 109.47036 * 210.00243 * 11 9 7 14 14 H 1.48499 * 109.46776 * 329.99732 * 11 9 7 15 15 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 16 16 H 1.08998 * 110.88732 * 61.52823 * 15 2 1 17 17 C 1.55151 * 111.00533 * 185.40734 * 15 2 1 18 18 C 1.54320 * 102.94615 * 153.57347 * 17 15 2 19 19 N 1.47021 * 107.27258 * 337.80871 * 18 17 15 20 20 C 1.34772 * 125.65362 * 178.89346 * 19 18 17 21 21 O 1.21286 * 120.00269 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99950 * 0.02562 * 20 19 18 23 23 H 1.09007 * 115.52218 * 34.50529 * 22 20 19 24 24 C 1.52993 * 117.46108 * 180.02562 * 22 20 19 25 25 H 1.08991 * 119.30046 * 356.29427 * 24 22 20 26 26 C 1.54275 * 118.19771 * 202.15067 * 24 22 20 27 27 C 1.57041 * 103.17835 * 271.73399 * 26 24 22 28 28 C 1.54888 * 102.88360 * 38.01374 * 27 26 24 29 29 C 1.52994 * 117.46179 * 249.04617 * 22 20 19 30 30 H 1.08999 * 119.30149 * 3.70366 * 29 22 20 31 31 C 1.47429 * 108.69893 * 358.94044 * 19 18 17 32 32 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 33 33 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 35 35 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 36 36 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 37 37 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 38 38 H 0.96996 * 119.99520 * 179.97438 * 10 9 7 39 39 H 1.09004 * 110.72292 * 271.93709 * 17 15 2 40 40 H 1.09008 * 110.72138 * 35.20914 * 17 15 2 41 41 H 1.09007 * 109.88241 * 97.22459 * 18 17 15 42 42 H 1.08996 * 109.88538 * 218.38615 * 18 17 15 43 43 H 1.09001 * 110.48450 * 30.89540 * 26 24 22 44 44 H 1.09000 * 110.48427 * 153.53140 * 26 24 22 45 45 H 1.08999 * 110.81713 * 279.58999 * 27 26 24 46 46 H 1.09005 * 110.72457 * 156.38354 * 27 26 24 47 47 H 1.09002 * 110.48353 * 203.23635 * 28 27 26 48 48 H 1.08994 * 110.60517 * 80.64434 * 28 27 26 49 49 H 1.09005 * 110.36353 * 265.28953 * 31 19 18 50 50 H 1.09002 * 110.36847 * 142.97032 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0055 1.4451 2.1412 6 7 2.0189 3.3198 1.5238 7 6 1.6932 3.9343 2.7053 8 1 1.1302 3.3986 3.4553 9 6 2.0865 5.2465 2.9374 10 7 1.7739 5.8357 4.0697 11 14 3.0597 6.1733 1.6398 12 1 2.1230 6.8774 0.7276 13 1 3.9465 7.1646 2.3003 14 1 3.8832 5.2146 0.8602 15 6 1.9954 -0.7659 -1.1377 16 1 1.6814 -0.3231 -2.0829 17 6 3.5409 -0.8805 -1.0635 18 6 3.8282 -2.1855 -1.8356 19 7 2.5944 -2.9847 -1.8165 20 6 2.4281 -4.1870 -2.4023 21 8 1.3613 -4.7584 -2.3219 22 6 3.5677 -4.8215 -3.1572 23 1 4.5620 -4.6325 -2.7525 24 6 3.3149 -6.1866 -3.7999 25 1 2.3557 -6.6802 -3.6440 26 6 4.5318 -7.0820 -4.1121 27 6 4.9521 -6.6247 -5.5544 28 6 4.7207 -5.0938 -5.5125 29 6 3.4338 -4.9289 -4.6775 30 1 2.5621 -4.4959 -5.1681 31 6 1.5688 -2.2526 -1.0512 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.5611 1.9274 -0.8309 36 1 3.0797 1.3444 -0.1083 37 1 2.5242 3.8010 0.8500 38 1 2.0488 6.7517 4.2318 39 1 4.0147 -0.0301 -1.5538 40 1 3.8723 -0.9640 -0.0284 41 1 4.1042 -1.9543 -2.8645 42 1 4.6335 -2.7350 -1.3482 43 1 5.3300 -6.9059 -3.3909 44 1 4.2421 -8.1328 -4.1128 45 1 4.3181 -7.0908 -6.3087 46 1 6.0019 -6.8516 -5.7405 47 1 4.5749 -4.7023 -6.5193 48 1 5.5577 -4.5924 -5.0268 49 1 1.5607 -2.5851 -0.0131 50 1 0.5867 -2.3924 -1.5028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189547296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:32 Heat of formation + Delta-G solvation = -26.678276 kcal Electronic energy + Delta-G solvation = -28782.665478 eV Core-core repulsion = 24810.887982 eV Total energy + Delta-G solvation = -3971.777496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83108 -39.55220 -38.58594 -37.57133 -35.56773 -33.90247 -32.18695 -31.69588 -30.97566 -29.42778 -28.69200 -27.69726 -25.78499 -24.57145 -23.21803 -22.67748 -21.13292 -20.33110 -20.07185 -19.46569 -19.25500 -18.26026 -17.70571 -16.89045 -16.13735 -15.97783 -15.51956 -15.13154 -14.99271 -14.76231 -14.40925 -14.17045 -14.00516 -13.73793 -13.61620 -13.28227 -13.20637 -13.02449 -12.94518 -12.68956 -12.45102 -12.14175 -11.91676 -11.89423 -11.74827 -11.57944 -11.54828 -11.31926 -11.26902 -11.09745 -11.03658 -10.89051 -10.61679 -10.52365 -10.29136 -9.99456 -9.94210 -9.55776 -8.87363 -8.62126 -8.20489 -8.03046 -6.32513 -3.84034 2.19150 2.59853 3.00131 3.04599 3.13242 3.32295 3.71421 3.82025 3.92112 4.08427 4.23902 4.29287 4.29427 4.43224 4.62707 4.71020 4.76401 4.78195 4.84736 4.95101 4.98604 5.05267 5.11470 5.12048 5.21579 5.27075 5.31929 5.38693 5.46181 5.55491 5.57195 5.59953 5.61116 5.62613 5.71298 5.76053 5.80678 5.82762 5.83147 5.90682 5.94160 5.99366 6.08190 6.48338 7.05996 7.23181 7.27640 7.56746 7.93601 8.13055 8.58559 8.93861 9.40756 9.81620 10.80579 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.001975 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.885275 B =14171.122333 C =14856.703988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.507 5.507 3 C 0.043 3.957 4 C 0.453 3.547 5 O -0.558 6.558 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.879 3.121 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.614 5.614 20 C 0.559 3.441 21 O -0.540 6.540 22 C -0.159 4.159 23 H 0.120 0.880 24 C -0.131 4.131 25 H 0.121 0.879 26 C -0.097 4.097 27 C -0.123 4.123 28 C -0.096 4.096 29 C -0.137 4.137 30 H 0.114 0.886 31 C 0.117 3.883 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 -19.578 -21.841 30.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.231 5.231 3 C -0.089 4.089 4 C 0.238 3.762 5 O -0.439 6.439 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.167 4.167 18 C -0.019 4.019 19 N -0.348 5.348 20 C 0.348 3.652 21 O -0.417 6.417 22 C -0.180 4.180 23 H 0.138 0.862 24 C -0.150 4.150 25 H 0.139 0.861 26 C -0.135 4.135 27 C -0.161 4.161 28 C -0.133 4.133 29 C -0.156 4.156 30 H 0.132 0.868 31 C -0.005 4.005 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.549 -20.405 -20.679 30.283 hybrid contribution 0.575 1.555 -1.556 2.273 sum 9.124 -18.850 -22.235 30.545 Atomic orbital electron populations 1.22612 0.86123 1.01923 1.02292 1.61607 1.09007 1.12664 1.39820 1.21919 1.00944 0.88931 0.97078 1.19601 0.85190 0.82432 0.88933 1.90534 1.42606 1.64029 1.46775 1.42205 1.50933 1.11988 1.17928 1.19423 1.33699 0.96219 0.93941 0.86252 1.25038 0.97897 0.96511 0.96734 1.69623 1.45747 1.13557 1.23179 0.86678 0.80484 0.80545 0.81703 1.19688 1.20181 1.19497 1.22779 0.94946 0.93412 0.92961 0.92687 1.22778 0.95338 0.96262 1.02301 1.22063 0.87124 0.91993 1.00725 1.48321 1.14503 1.18640 1.53309 1.19239 0.88219 0.79418 0.78326 1.90710 1.27904 1.61999 1.61107 1.22325 0.98780 1.01466 0.95443 0.86194 1.23263 1.01018 0.88491 1.02209 0.86074 1.22393 0.95827 0.98857 0.96393 1.23055 1.01260 0.94973 0.96765 1.21994 0.95416 0.96418 0.99501 1.23247 1.00462 1.02798 0.89046 0.86815 1.22206 0.91585 0.89756 0.97002 0.96447 0.91856 0.88144 0.93275 0.89103 0.79764 0.91618 0.89839 0.88797 0.91181 0.91050 0.91011 0.90721 0.91062 0.91158 0.90807 0.91071 0.89830 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.05 60.07 0.54 0.82 16 2 N -0.51 -7.69 4.40 -233.74 -1.03 -8.72 16 3 C 0.04 0.68 5.32 -4.97 -0.03 0.65 16 4 C 0.45 9.94 7.51 -10.98 -0.08 9.86 16 5 O -0.56 -14.48 13.89 5.55 0.08 -14.40 16 6 N -0.59 -13.70 5.09 -10.96 -0.06 -13.76 16 7 C -0.30 -8.45 10.16 -14.94 -0.15 -8.61 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 11 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 15 C 0.07 0.80 2.71 -65.57 -0.18 0.63 16 16 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 17 C -0.13 -1.21 5.31 -24.90 -0.13 -1.34 16 18 C 0.10 0.86 6.28 -3.07 -0.02 0.84 16 19 N -0.61 -6.83 3.33 -170.52 -0.57 -7.40 16 20 C 0.56 6.84 7.63 -10.99 -0.08 6.75 16 21 O -0.54 -8.62 16.58 5.55 0.09 -8.53 16 22 C -0.16 -1.40 5.08 -91.78 -0.47 -1.86 16 23 H 0.12 0.86 7.74 -51.93 -0.40 0.45 16 24 C -0.13 -1.09 6.33 -89.53 -0.57 -1.66 16 25 H 0.12 1.20 7.78 -51.93 -0.40 0.80 16 26 C -0.10 -0.58 6.79 -23.87 -0.16 -0.74 16 27 C -0.12 -0.61 6.96 -23.54 -0.16 -0.77 16 28 C -0.10 -0.52 6.63 -25.06 -0.17 -0.69 16 29 C -0.14 -1.04 6.64 -89.52 -0.59 -1.63 16 30 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 31 C 0.12 1.44 5.36 -2.53 -0.01 1.43 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.88 6.97 -51.93 -0.36 0.51 16 34 H 0.10 1.90 5.88 -51.93 -0.31 1.60 16 35 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 36 H 0.09 1.23 6.73 -51.93 -0.35 0.88 16 37 H 0.37 7.49 5.76 -40.82 -0.24 7.25 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 40 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -33.74 395.12 -10.17 -43.91 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.34 Total: 8.68 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.36 Total: 4.69 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.88 Total: -54.58 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.74 -10.17 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.233 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds