Wall clock time and date at job start Tue Mar 31 2020 18:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99975 * 2 1 4 4 C 1.50701 * 109.46921 * 66.04817 * 3 2 1 5 5 O 1.21294 * 119.99849 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99795 * 179.97438 * 4 3 2 7 7 C 1.37101 * 119.99707 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99704 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99927 * 180.02562 * 7 6 4 10 10 N 1.31418 * 120.00215 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00009 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.47177 * 89.99959 * 11 9 7 13 13 H 1.48505 * 109.47036 * 210.00243 * 11 9 7 14 14 H 1.48499 * 109.46776 * 329.99732 * 11 9 7 15 15 C 1.46903 * 110.99788 * 236.05051 * 2 1 3 16 16 H 1.08998 * 110.88732 * 61.52823 * 15 2 1 17 17 C 1.55151 * 111.00533 * 185.40734 * 15 2 1 18 18 C 1.54320 * 102.94615 * 153.57347 * 17 15 2 19 19 N 1.47021 * 107.27258 * 337.80871 * 18 17 15 20 20 C 1.34772 * 125.65362 * 178.89346 * 19 18 17 21 21 O 1.21286 * 120.00269 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.99950 * 0.02562 * 20 19 18 23 23 H 1.09007 * 115.52218 * 34.50529 * 22 20 19 24 24 C 1.52993 * 117.46108 * 180.02562 * 22 20 19 25 25 H 1.08991 * 119.30046 * 356.29427 * 24 22 20 26 26 C 1.54275 * 118.19771 * 202.15067 * 24 22 20 27 27 C 1.57041 * 103.17835 * 271.73399 * 26 24 22 28 28 C 1.54888 * 102.88360 * 38.01374 * 27 26 24 29 29 C 1.52994 * 117.46179 * 249.04617 * 22 20 19 30 30 H 1.08999 * 119.30149 * 3.70366 * 29 22 20 31 31 C 1.47429 * 108.69893 * 358.94044 * 19 18 17 32 32 H 1.09001 * 109.47121 * 59.99638 * 1 2 3 33 33 H 1.09005 * 109.47342 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46894 * 299.99652 * 1 2 3 35 35 H 1.09002 * 109.47401 * 306.04845 * 3 2 1 36 36 H 1.09001 * 109.46874 * 186.04858 * 3 2 1 37 37 H 0.96995 * 120.00011 * 0.02562 * 6 4 3 38 38 H 0.96996 * 119.99520 * 179.97438 * 10 9 7 39 39 H 1.09004 * 110.72292 * 271.93709 * 17 15 2 40 40 H 1.09008 * 110.72138 * 35.20914 * 17 15 2 41 41 H 1.09007 * 109.88241 * 97.22459 * 18 17 15 42 42 H 1.08996 * 109.88538 * 218.38615 * 18 17 15 43 43 H 1.09001 * 110.48450 * 30.89540 * 26 24 22 44 44 H 1.09000 * 110.48427 * 153.53140 * 26 24 22 45 45 H 1.08999 * 110.81713 * 279.58999 * 27 26 24 46 46 H 1.09005 * 110.72457 * 156.38354 * 27 26 24 47 47 H 1.09002 * 110.48353 * 203.23635 * 28 27 26 48 48 H 1.08994 * 110.60517 * 80.64434 * 28 27 26 49 49 H 1.09005 * 110.36353 * 265.28953 * 31 19 18 50 50 H 1.09002 * 110.36847 * 142.97032 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0055 1.4451 2.1412 6 7 2.0189 3.3198 1.5238 7 6 1.6932 3.9343 2.7053 8 1 1.1302 3.3986 3.4553 9 6 2.0865 5.2465 2.9374 10 7 1.7739 5.8357 4.0697 11 14 3.0597 6.1733 1.6398 12 1 2.1230 6.8774 0.7276 13 1 3.9465 7.1646 2.3003 14 1 3.8832 5.2146 0.8602 15 6 1.9954 -0.7659 -1.1377 16 1 1.6814 -0.3231 -2.0829 17 6 3.5409 -0.8805 -1.0635 18 6 3.8282 -2.1855 -1.8356 19 7 2.5944 -2.9847 -1.8165 20 6 2.4281 -4.1870 -2.4023 21 8 1.3613 -4.7584 -2.3219 22 6 3.5677 -4.8215 -3.1572 23 1 4.5620 -4.6325 -2.7525 24 6 3.3149 -6.1866 -3.7999 25 1 2.3557 -6.6802 -3.6440 26 6 4.5318 -7.0820 -4.1121 27 6 4.9521 -6.6247 -5.5544 28 6 4.7207 -5.0938 -5.5125 29 6 3.4338 -4.9289 -4.6775 30 1 2.5621 -4.4959 -5.1681 31 6 1.5688 -2.2526 -1.0512 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.5611 1.9274 -0.8309 36 1 3.0797 1.3444 -0.1083 37 1 2.5242 3.8010 0.8500 38 1 2.0488 6.7517 4.2318 39 1 4.0147 -0.0301 -1.5538 40 1 3.8723 -0.9640 -0.0284 41 1 4.1042 -1.9543 -2.8645 42 1 4.6335 -2.7350 -1.3482 43 1 5.3300 -6.9059 -3.3909 44 1 4.2421 -8.1328 -4.1128 45 1 4.3181 -7.0908 -6.3087 46 1 6.0019 -6.8516 -5.7405 47 1 4.5749 -4.7023 -6.5193 48 1 5.5577 -4.5924 -5.0268 49 1 1.5607 -2.5851 -0.0131 50 1 0.5867 -2.3924 -1.5028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189547296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:31 Heat of formation + Delta-G solvation = -50.810972 kcal Electronic energy + Delta-G solvation = -28783.711950 eV Core-core repulsion = 24810.887982 eV Total energy + Delta-G solvation = -3972.823969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63797 -40.65584 -39.84884 -38.66513 -36.78262 -35.81460 -33.73376 -32.79441 -31.80823 -30.51703 -29.14585 -28.92270 -27.10172 -25.95356 -24.38004 -23.43033 -21.66442 -21.36546 -21.13052 -20.64853 -20.26957 -19.99313 -18.54217 -17.91893 -17.54306 -16.94241 -16.80866 -16.44627 -15.95551 -15.74761 -15.57990 -15.30232 -15.16314 -14.87500 -14.77606 -14.33563 -14.23293 -14.04851 -13.92362 -13.81848 -13.66627 -13.56396 -13.12045 -12.97660 -12.62482 -12.44606 -12.39722 -12.28131 -12.24738 -11.96409 -11.95853 -11.89361 -11.84978 -11.69748 -11.44476 -11.15841 -11.04911 -10.65431 -10.36541 -10.21117 -9.75564 -9.27980 -8.38809 -5.99710 1.31821 1.32765 1.37885 1.46825 1.74171 1.98915 2.25489 2.62322 2.67741 3.16065 3.17798 3.27213 3.54396 3.64239 3.68755 3.73908 3.98533 4.03886 4.10101 4.18871 4.24754 4.27847 4.31793 4.36496 4.44685 4.48722 4.49786 4.55056 4.56086 4.65058 4.68229 4.77623 4.83884 4.85599 4.94151 5.02106 5.09858 5.14218 5.20745 5.22863 5.23248 5.26453 5.28231 5.50933 5.55212 5.86308 5.98982 6.14369 6.41985 6.62467 6.91548 7.02449 7.42840 8.00990 8.78901 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.001975 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.885275 B =14171.122333 C =14856.703988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.528 5.528 3 C 0.056 3.944 4 C 0.451 3.549 5 O -0.607 6.607 6 N -0.591 5.591 7 C -0.326 4.326 8 H 0.053 0.947 9 C -0.018 4.018 10 N -0.937 5.937 11 Si 0.965 3.035 12 H -0.259 1.259 13 H -0.277 1.277 14 H -0.226 1.226 15 C 0.075 3.925 16 H 0.073 0.927 17 C -0.124 4.124 18 C 0.104 3.896 19 N -0.613 5.613 20 C 0.550 3.450 21 O -0.591 6.591 22 C -0.158 4.158 23 H 0.145 0.855 24 C -0.145 4.145 25 H 0.094 0.906 26 C -0.093 4.093 27 C -0.120 4.120 28 C -0.090 4.090 29 C -0.127 4.127 30 H 0.101 0.899 31 C 0.117 3.883 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.390 0.610 38 H 0.278 0.722 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 -19.143 -26.257 35.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.253 5.253 3 C -0.075 4.075 4 C 0.239 3.761 5 O -0.491 6.491 6 N -0.233 5.233 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.216 4.216 10 N -0.577 5.577 11 Si 0.785 3.215 12 H -0.183 1.183 13 H -0.202 1.202 14 H -0.149 1.149 15 C -0.034 4.034 16 H 0.091 0.909 17 C -0.162 4.162 18 C -0.018 4.018 19 N -0.345 5.345 20 C 0.341 3.659 21 O -0.472 6.472 22 C -0.179 4.179 23 H 0.162 0.838 24 C -0.164 4.164 25 H 0.112 0.888 26 C -0.131 4.131 27 C -0.157 4.157 28 C -0.127 4.127 29 C -0.146 4.146 30 H 0.119 0.881 31 C -0.006 4.006 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.104 0.896 49 H 0.079 0.921 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.557 -19.982 -25.122 34.468 hybrid contribution -0.812 1.290 -0.064 1.526 sum 11.745 -18.691 -25.186 33.491 Atomic orbital electron populations 1.22433 0.86978 1.02007 1.00967 1.61487 1.08591 1.12827 1.42395 1.21846 1.03217 0.88869 0.93527 1.20898 0.82937 0.81767 0.90514 1.90531 1.44192 1.65131 1.49200 1.42009 1.51799 1.12619 1.16915 1.18977 1.34645 0.96967 0.94943 0.92860 1.26143 0.98748 0.97004 0.99690 1.69817 1.47389 1.14307 1.26233 0.85361 0.78866 0.79075 0.78187 1.18342 1.20227 1.14894 1.22772 0.96684 0.91813 0.92094 0.90945 1.22826 0.93147 0.98050 1.02189 1.22299 0.85983 0.91099 1.02443 1.48427 1.15270 1.18508 1.52342 1.19930 0.88502 0.79383 0.78090 1.90682 1.30128 1.63361 1.63046 1.22324 0.98169 1.01436 0.95942 0.83765 1.23312 1.01088 0.89083 1.02897 0.88790 1.22420 0.94804 0.98449 0.97396 1.23060 1.02236 0.94614 0.95788 1.22036 0.94315 0.96819 0.99577 1.23332 1.01365 1.01472 0.88429 0.88064 1.22051 0.91767 0.90926 0.95881 0.94646 0.91202 0.92374 0.90152 0.85486 0.77453 0.91242 0.86785 0.90157 0.88427 0.89305 0.90110 0.90558 0.91217 0.89450 0.89850 0.89645 0.92054 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.05 127.69 1.15 1.90 16 2 N -0.53 -15.24 4.40 -893.43 -3.93 -19.17 16 3 C 0.06 1.60 5.32 85.56 0.46 2.06 16 4 C 0.45 19.72 7.51 87.66 0.66 20.38 16 5 O -0.61 -33.04 13.89 -3.07 -0.04 -33.09 16 6 N -0.59 -27.04 5.09 -306.98 -1.56 -28.60 16 7 C -0.33 -18.86 10.16 84.04 0.85 -18.01 16 8 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 9 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 10 N -0.94 -56.26 13.96 21.66 0.30 -55.95 16 11 Si 0.97 37.75 27.74 68.60 1.90 39.65 16 12 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 13 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 14 H -0.23 -7.20 6.52 99.48 0.65 -6.55 16 15 C 0.08 1.55 2.71 46.30 0.13 1.68 16 16 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 17 C -0.12 -1.81 5.31 31.78 0.17 -1.64 16 18 C 0.10 1.28 6.28 86.73 0.55 1.83 16 19 N -0.61 -12.68 3.33 -811.79 -2.70 -15.38 16 20 C 0.55 13.21 7.63 87.66 0.67 13.88 16 21 O -0.59 -19.72 16.58 -3.05 -0.05 -19.77 16 22 C -0.16 -2.49 5.08 -11.54 -0.06 -2.55 16 23 H 0.14 1.53 7.74 -2.38 -0.02 1.52 16 24 C -0.15 -2.30 6.33 -10.09 -0.06 -2.37 16 25 H 0.09 1.99 7.78 -2.39 -0.02 1.98 16 26 C -0.09 -0.92 6.79 32.45 0.22 -0.70 16 27 C -0.12 -0.82 6.96 32.66 0.23 -0.59 16 28 C -0.09 -0.66 6.63 31.68 0.21 -0.45 16 29 C -0.13 -1.69 6.64 -10.08 -0.07 -1.76 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 C 0.12 2.84 5.36 86.85 0.47 3.31 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 2.01 6.97 -2.38 -0.02 1.99 16 34 H 0.06 2.31 5.88 -2.39 -0.01 2.30 16 35 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 36 H 0.13 2.77 6.73 -2.39 -0.02 2.75 16 37 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 38 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.11 1.04 7.88 -2.38 -0.02 1.02 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.09 0.85 8.06 -2.39 -0.02 0.83 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 0.35 8.14 -2.38 -0.02 0.33 16 47 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.06 1.67 7.81 -2.39 -0.02 1.65 16 Total: -1.00 -82.99 395.12 0.29 -82.70 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.34 Total: 33.13 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 6.03 Total: 16.48 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -7.89 Total: -119.10 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.86 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.65 kcal Total: -82.99 0.29 -82.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189547296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.887 kcal (2) G-P(sol) polarization free energy of solvation -82.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds