Wall clock time and date at job start Tue Mar 31 2020 18:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46868 * 60.44602 * 3 2 1 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47000 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99618 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.65427 * 0.02798 * 9 7 6 11 11 C 1.54319 * 107.27403 * 178.89861 * 10 9 7 12 12 C 1.55158 * 102.94374 * 337.80817 * 11 10 9 13 13 H 1.09000 * 111.00401 * 277.42390 * 12 11 10 14 14 N 1.46899 * 111.00360 * 153.60885 * 12 11 10 15 15 C 1.46900 * 110.99789 * 185.40609 * 14 12 11 16 16 C 1.46900 * 110.99553 * 61.45706 * 14 12 11 17 17 C 1.50703 * 109.46919 * 189.99513 * 16 14 12 18 18 O 1.21289 * 120.00140 * 0.02562 * 17 16 14 19 19 N 1.34775 * 120.00030 * 179.97438 * 17 16 14 20 20 C 1.37100 * 120.00011 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00042 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00242 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99926 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.47041 * 90.00063 * 24 22 20 26 26 H 1.48500 * 109.47095 * 209.99683 * 24 22 20 27 27 H 1.48496 * 109.47118 * 330.00015 * 24 22 20 28 28 C 1.47425 * 125.64486 * 179.71243 * 9 7 6 29 29 H 4.44653 * 5.63320 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47409 * 300.44671 * 3 2 1 31 31 H 1.09001 * 109.47194 * 180.44099 * 3 2 1 32 32 H 1.08993 * 109.46955 * 300.00020 * 4 3 2 33 33 H 1.09000 * 109.47050 * 59.99849 * 4 3 2 34 34 H 1.08993 * 109.47839 * 299.99931 * 5 4 3 35 35 H 1.09000 * 109.47160 * 60.00369 * 5 4 3 36 36 H 1.09004 * 109.47107 * 300.00294 * 6 5 4 37 37 H 1.09000 * 109.46866 * 60.00185 * 6 5 4 38 38 H 1.08996 * 109.87819 * 298.32286 * 10 9 7 39 39 H 1.09003 * 109.87680 * 59.48213 * 10 9 7 40 40 H 1.09000 * 110.71768 * 96.17001 * 11 10 9 41 41 H 1.09001 * 110.72228 * 219.26464 * 11 10 9 42 42 H 1.08998 * 109.46996 * 60.00169 * 15 14 12 43 43 H 1.09000 * 109.46980 * 180.02562 * 15 14 12 44 44 H 1.08996 * 109.47168 * 300.00361 * 15 14 12 45 45 H 1.08992 * 109.47455 * 309.99467 * 16 14 12 46 46 H 1.09000 * 109.47403 * 69.99983 * 16 14 12 47 47 H 0.96997 * 120.00282 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99831 * 180.02562 * 23 22 20 49 49 H 1.09000 * 110.36928 * 323.01419 * 28 9 7 50 50 H 1.09002 * 110.36527 * 85.33030 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7107 -1.2549 5 6 4.6863 -0.7094 -1.2552 6 6 5.1966 -1.4201 -2.5103 7 6 6.7036 -1.4194 -2.5103 8 8 7.3098 -0.9019 -1.5962 9 7 7.3777 -1.9949 -3.5257 10 6 6.7718 -2.6553 -4.6911 11 6 7.9254 -3.1359 -5.5966 12 6 9.1049 -2.2220 -5.1712 13 1 9.0546 -1.2581 -5.6776 14 7 10.3955 -2.8779 -5.4204 15 6 11.5061 -2.0686 -4.9012 16 6 10.5744 -3.1614 -6.8506 17 6 11.7808 -4.0444 -7.0406 18 8 12.4276 -4.4026 -6.0791 19 7 12.1404 -4.4369 -8.2787 20 6 13.2376 -5.2406 -8.4515 21 1 13.8135 -5.5595 -7.5954 22 6 13.6086 -5.6448 -9.7280 23 7 12.9076 -5.2571 -10.7698 24 14 15.1040 -6.7392 -9.9635 25 1 14.6892 -8.1640 -9.9024 26 1 15.7191 -6.4591 -11.2858 27 1 16.0922 -6.4649 -8.8896 28 6 8.8448 -2.0606 -3.6549 29 1 -1.0499 0.0001 -0.0002 30 1 3.0096 -0.5199 0.8859 31 1 3.0089 1.0285 0.0079 32 1 2.7934 -1.7384 -1.2628 33 1 2.7927 -0.1901 -2.1408 34 1 5.0489 0.3184 -1.2474 35 1 5.0502 -1.2297 -0.3692 36 1 4.8341 -2.4481 -2.5186 37 1 4.8327 -0.8994 -3.3960 38 1 6.1760 -3.5080 -4.3657 39 1 6.1448 -1.9477 -5.2337 40 1 8.1586 -4.1826 -5.4011 41 1 7.6783 -2.9871 -6.6477 42 1 11.3851 -1.9323 -3.8266 43 1 12.4497 -2.5770 -5.0993 44 1 11.5077 -1.0958 -5.3929 45 1 9.6891 -3.6685 -7.2340 46 1 10.7201 -2.2261 -7.3910 47 1 11.6229 -4.1507 -9.0477 48 1 13.1664 -5.5396 -11.6609 49 1 9.2996 -1.1407 -3.2873 50 1 9.2353 -2.9211 -3.1117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189704708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:30 Heat of formation + Delta-G solvation = -43.757969 kcal Electronic energy + Delta-G solvation = -27831.113239 eV Core-core repulsion = 23858.595112 eV Total energy + Delta-G solvation = -3972.518127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27680 -40.32404 -39.02745 -37.02972 -36.68925 -35.75955 -34.09861 -33.25538 -32.08223 -30.93773 -30.14684 -28.77595 -27.08484 -26.27528 -24.89243 -23.64748 -22.16930 -21.42403 -20.86700 -20.14128 -19.78997 -18.85382 -18.22264 -17.86382 -17.53265 -16.99198 -16.57369 -16.21566 -16.17767 -15.97895 -15.54118 -15.31866 -15.14055 -15.05405 -14.75094 -14.35169 -14.19401 -14.07229 -13.79314 -13.53850 -13.52637 -13.41944 -13.05780 -12.95128 -12.68505 -12.60133 -12.55530 -12.40214 -12.24497 -12.13864 -12.11792 -11.86684 -11.82199 -11.57134 -11.43475 -11.13747 -10.95656 -10.85358 -10.26804 -9.97096 -9.68045 -9.26054 -8.44377 -5.92333 1.39138 1.43239 1.55209 1.62896 1.84184 1.94707 1.95975 2.08714 2.30764 2.78920 3.22732 3.29722 3.44198 3.52825 3.68055 3.80531 3.99725 4.03401 4.08209 4.18290 4.32686 4.34357 4.39521 4.42479 4.45185 4.54008 4.57922 4.59242 4.64678 4.69478 4.76123 4.83235 4.85336 4.87814 4.94170 5.03424 5.10778 5.13410 5.22634 5.23656 5.27171 5.35553 5.43761 5.47054 5.85386 6.05244 6.18880 6.52848 6.63994 6.73952 7.14227 7.16319 7.60016 8.16422 8.72918 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036764 B = 0.001550 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.433221 B =18062.914930 C =18540.424795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.215 4.215 3 C -0.019 4.019 4 C -0.103 4.103 5 C -0.101 4.101 6 C -0.126 4.126 7 C 0.519 3.481 8 O -0.591 6.591 9 N -0.620 5.620 10 C 0.104 3.896 11 C -0.126 4.126 12 C 0.072 3.928 13 H 0.067 0.933 14 N -0.525 5.525 15 C 0.026 3.974 16 C 0.060 3.940 17 C 0.441 3.559 18 O -0.616 6.616 19 N -0.573 5.573 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.989 3.011 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.275 1.275 28 C 0.119 3.881 29 H 0.240 0.760 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.031 0.969 45 H 0.117 0.883 46 H 0.068 0.932 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.062 0.938 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.434 10.112 11.175 28.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.215 4.215 3 C -0.055 4.055 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.165 4.165 7 C 0.310 3.690 8 O -0.472 6.472 9 N -0.354 5.354 10 C -0.018 4.018 11 C -0.164 4.164 12 C -0.037 4.037 13 H 0.085 0.915 14 N -0.250 5.250 15 C -0.122 4.122 16 C -0.070 4.070 17 C 0.228 3.772 18 O -0.502 6.502 19 N -0.211 5.211 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.210 4.210 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.005 4.005 29 H 0.257 0.743 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.049 0.951 45 H 0.135 0.865 46 H 0.086 0.914 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.704 9.691 12.393 28.450 hybrid contribution 0.905 0.303 -0.885 1.302 sum -22.799 9.994 11.508 27.424 Atomic orbital electron populations 1.25694 0.96984 1.00530 1.00190 1.23730 0.95554 1.01061 1.01197 1.18835 0.84000 1.02697 0.99986 1.21448 0.93893 1.01407 0.97288 1.21294 0.94845 1.00919 0.96874 1.21705 0.87994 1.05026 1.01825 1.21222 0.91679 0.76263 0.79791 1.90692 1.71817 1.47669 1.37043 1.48620 1.06814 1.56729 1.23224 1.22282 0.96030 0.98253 0.85255 1.22797 0.92451 1.00008 1.01126 1.22752 0.89235 0.96857 0.94814 0.91500 1.61519 1.01956 1.46671 1.14831 1.22414 0.94984 0.94692 1.00113 1.21727 0.97215 0.98655 0.89445 1.20790 0.88320 0.85230 0.82848 1.90476 1.57737 1.61166 1.40797 1.41904 1.26863 1.45113 1.07201 1.19632 1.05924 1.26787 0.93786 0.90476 1.25957 1.01569 0.99202 0.94278 1.69663 1.40969 1.46126 0.99293 0.84981 0.77711 0.78269 0.77705 1.19695 1.19607 1.19974 1.21938 0.81445 1.01199 0.95925 0.74317 0.89198 0.89091 0.90881 0.90723 0.92079 0.92288 0.86648 0.86312 0.88987 0.88234 0.90402 0.87496 0.91077 0.92219 0.95055 0.86463 0.91417 0.76963 0.91363 0.91937 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.65 19.25 74.32 1.43 -1.22 16 2 C -0.22 -3.07 13.34 31.13 0.42 -2.65 16 3 C -0.02 -0.21 5.70 28.79 0.16 -0.04 16 4 C -0.10 -0.95 5.17 30.60 0.16 -0.80 16 5 C -0.10 -1.28 4.50 30.60 0.14 -1.14 16 6 C -0.13 -1.42 4.89 29.85 0.15 -1.28 16 7 C 0.52 10.98 7.85 87.66 0.69 11.67 16 8 O -0.59 -18.07 16.24 -3.04 -0.05 -18.12 16 9 N -0.62 -12.13 3.33 -812.24 -2.70 -14.83 16 10 C 0.10 1.25 6.49 86.73 0.56 1.82 16 11 C -0.13 -2.06 5.32 31.78 0.17 -1.89 16 12 C 0.07 1.61 2.69 46.23 0.12 1.74 16 13 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 14 N -0.53 -16.16 4.40 -893.90 -3.93 -20.09 16 15 C 0.03 0.84 9.01 127.69 1.15 1.99 16 16 C 0.06 1.95 5.32 85.56 0.46 2.41 16 17 C 0.44 20.33 7.47 87.66 0.66 20.99 16 18 O -0.62 -33.43 13.91 -3.06 -0.04 -33.47 16 19 N -0.57 -28.59 5.29 -306.99 -1.62 -30.21 16 20 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 23 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 24 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 C 0.12 2.89 5.36 86.78 0.47 3.35 16 29 H 0.24 1.23 7.80 -4.42 -0.03 1.20 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 1.30 7.88 -2.39 -0.02 1.28 16 42 H 0.07 2.10 7.16 -2.39 -0.02 2.09 16 43 H 0.06 2.41 5.82 -2.39 -0.01 2.40 16 44 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.12 3.16 6.73 -2.39 -0.02 3.14 16 46 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 49 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 50 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -75.34 413.35 2.15 -73.20 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.19 Total: 30.22 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 8.00 Total: 17.14 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -7.98 Total: -113.48 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -75.34 2.15 -73.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189704708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.438 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds