Wall clock time and date at job start Tue Mar 31 2020 18:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00082 * 2 1 4 4 C 1.50706 * 109.46878 * 66.04815 * 3 2 1 5 5 O 1.21291 * 119.99960 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99680 * 180.02562 * 4 3 2 7 7 C 1.37101 * 119.99839 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99607 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00056 * 180.02562 * 7 6 4 10 10 N 1.31406 * 120.00064 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00041 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47352 * 89.99733 * 11 9 7 13 13 H 1.48502 * 109.46911 * 210.00095 * 11 9 7 14 14 H 1.48502 * 109.46916 * 329.99340 * 11 9 7 15 15 C 1.46900 * 111.00091 * 236.04560 * 2 1 3 16 16 H 1.09000 * 110.88497 * 72.68348 * 15 2 1 17 17 C 1.55153 * 111.00737 * 308.80213 * 15 2 1 18 18 C 1.54327 * 102.94534 * 206.42310 * 17 15 2 19 19 N 1.47027 * 107.26924 * 22.18714 * 18 17 15 20 20 C 1.34768 * 125.64682 * 181.10158 * 19 18 17 21 21 O 1.21283 * 119.99988 * 187.04628 * 20 19 18 22 22 C 1.50702 * 120.00177 * 7.05659 * 20 19 18 23 23 C 1.52997 * 115.55044 * 180.57928 * 22 20 19 24 24 C 1.52996 * 117.49782 * 34.33441 * 23 22 20 25 25 C 1.52997 * 117.50308 * 325.67446 * 23 22 20 26 26 C 1.53002 * 117.49685 * 34.87165 * 22 20 19 27 27 C 1.52997 * 117.49497 * 326.25240 * 22 20 19 28 28 C 1.47422 * 108.70144 * 1.06516 * 19 18 17 29 29 H 1.09002 * 109.46922 * 55.00649 * 1 2 3 30 30 H 1.09001 * 109.46595 * 175.00967 * 1 2 3 31 31 H 1.08998 * 109.47035 * 295.00812 * 1 2 3 32 32 H 1.08998 * 109.46978 * 306.04581 * 3 2 1 33 33 H 1.09000 * 109.46833 * 186.04662 * 3 2 1 34 34 H 0.96993 * 120.00335 * 359.97438 * 6 4 3 35 35 H 0.97004 * 120.00278 * 179.97438 * 10 9 7 36 36 H 1.09006 * 110.71731 * 324.78484 * 17 15 2 37 37 H 1.08995 * 110.72111 * 87.87652 * 17 15 2 38 38 H 1.09000 * 109.88421 * 141.60366 * 18 17 15 39 39 H 1.09003 * 109.88104 * 262.61862 * 18 17 15 40 40 H 1.08998 * 115.54877 * 179.97438 * 23 22 20 41 41 H 1.09000 * 117.49969 * 359.97438 * 24 23 22 42 42 H 1.09004 * 117.50215 * 145.02078 * 24 23 22 43 43 H 1.08999 * 117.49898 * 214.97775 * 25 23 22 44 44 H 1.09006 * 117.49613 * 359.97438 * 25 23 22 45 45 H 1.09000 * 117.50122 * 0.02562 * 26 22 20 46 46 H 1.09007 * 117.49453 * 145.02131 * 26 22 20 47 47 H 1.09006 * 117.49582 * 214.97597 * 27 22 20 48 48 H 1.09001 * 117.50442 * 0.02562 * 27 22 20 49 49 H 1.09001 * 110.36445 * 217.03243 * 28 19 18 50 50 H 1.09004 * 110.36863 * 94.70854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0181 3.3201 1.5234 7 6 1.6915 3.9350 2.7044 8 1 1.1285 3.3993 3.4544 9 6 2.0839 5.2476 2.9361 10 7 2.7685 5.8995 2.0233 11 14 1.6395 6.0851 4.5456 12 1 2.7168 5.8495 5.5401 13 1 1.4862 7.5446 4.3183 14 1 0.3622 5.5271 5.0578 15 6 1.9955 -0.7660 -1.1376 16 1 1.8518 -0.2228 -2.0716 17 6 1.3475 -2.1740 -1.2076 18 6 2.4231 -3.0141 -1.9279 19 7 3.7098 -2.3271 -1.7430 20 6 4.8951 -2.7324 -2.2399 21 8 5.9149 -2.1592 -1.9196 22 6 4.9536 -3.8978 -3.1936 23 6 6.3517 -4.2799 -3.6837 24 6 7.5146 -4.1098 -2.7042 25 6 7.3626 -3.1497 -3.8867 26 6 3.7901 -4.0686 -4.1725 27 6 3.9426 -5.0281 -2.9906 28 6 3.4883 -1.1209 -0.9248 29 1 -0.3633 0.5894 -0.8419 30 1 -0.3632 -1.0238 -0.0894 31 1 -0.3633 0.4344 0.9313 32 1 1.5612 1.9273 -0.8309 33 1 3.0798 1.3444 -0.1083 34 1 2.5234 3.8013 0.8496 35 1 3.0421 6.8160 2.1848 36 1 1.1608 -2.5628 -0.2065 37 1 0.4247 -2.1454 -1.7869 38 1 2.4692 -4.0114 -1.4902 39 1 2.1878 -3.0859 -2.9898 40 1 6.3939 -5.1231 -4.3732 41 1 7.2837 -3.7251 -1.7108 42 1 8.3222 -4.8404 -2.7499 43 1 8.0702 -3.2491 -4.7098 44 1 7.0316 -2.1337 -3.6714 45 1 2.9827 -3.3378 -4.1269 46 1 4.0207 -4.4532 -5.1660 47 1 4.2735 -6.0440 -3.2066 48 1 3.2350 -4.9287 -2.1675 49 1 4.1248 -0.3062 -1.2701 50 1 3.6813 -1.3348 0.1264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190810206.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:17 Heat of formation + Delta-G solvation = 4.744738 kcal Electronic energy + Delta-G solvation = -29508.208042 eV Core-core repulsion = 25537.793149 eV Total energy + Delta-G solvation = -3970.414892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96782 -40.50300 -39.37628 -38.06128 -37.26544 -36.03315 -35.53739 -33.29857 -31.89459 -30.05287 -29.36178 -26.80012 -26.43642 -25.07499 -23.84879 -23.65465 -22.97571 -22.41867 -21.36243 -20.91838 -20.11034 -19.86842 -18.01268 -17.59351 -17.54863 -16.67000 -16.64346 -16.30956 -16.27597 -16.06871 -15.59333 -15.44522 -15.17446 -15.07261 -14.84667 -14.62938 -14.30598 -13.88673 -13.77960 -13.65776 -13.43900 -13.24004 -13.06131 -12.75329 -12.63000 -12.48758 -12.41819 -12.36277 -12.17104 -12.13143 -12.10541 -11.86015 -11.74297 -11.50878 -11.46639 -11.07037 -10.58069 -10.39284 -10.30257 -10.01776 -9.61935 -9.25848 -8.47416 -5.96266 1.36914 1.40194 1.40418 1.53235 1.79944 2.03828 2.27530 2.65312 2.75628 3.19078 3.24120 3.27005 3.36034 3.44469 3.54699 3.63787 3.93450 3.99908 4.00699 4.11953 4.15156 4.22435 4.26939 4.30860 4.35744 4.38682 4.46811 4.52625 4.58477 4.68040 4.70111 4.75091 4.84619 4.86937 4.91257 4.99323 5.02067 5.12055 5.13121 5.23220 5.26834 5.30508 5.33666 5.40297 5.40555 5.84258 6.03405 6.18553 6.48045 6.59195 7.10284 7.11878 7.55052 8.10524 8.70204 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.002321 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.205506 B =12059.707198 C =13156.705645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.526 5.526 3 C 0.056 3.944 4 C 0.443 3.557 5 O -0.611 6.611 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.081 0.919 9 C -0.015 4.015 10 N -0.923 5.923 11 Si 0.993 3.007 12 H -0.273 1.273 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.074 3.926 16 H 0.069 0.931 17 C -0.120 4.120 18 C 0.080 3.920 19 N -0.616 5.616 20 C 0.552 3.448 21 O -0.573 6.573 22 C -0.151 4.151 23 C -0.098 4.098 24 C -0.180 4.180 25 C -0.180 4.180 26 C -0.144 4.144 27 C -0.155 4.155 28 C 0.117 3.883 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.057 0.943 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -23.184 -18.173 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.250 5.250 3 C -0.075 4.075 4 C 0.231 3.769 5 O -0.497 6.497 6 N -0.214 5.214 7 C -0.460 4.460 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.817 3.183 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.195 1.195 15 C -0.035 4.035 16 H 0.087 0.913 17 C -0.157 4.157 18 C -0.041 4.041 19 N -0.350 5.350 20 C 0.343 3.657 21 O -0.453 6.453 22 C -0.155 4.155 23 C -0.116 4.116 24 C -0.217 4.217 25 C -0.216 4.216 26 C -0.180 4.180 27 C -0.192 4.192 28 C -0.006 4.006 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.136 0.864 46 H 0.142 0.858 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.075 0.925 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.218 -23.344 -17.043 28.904 hybrid contribution 0.365 1.878 0.232 1.927 sum 0.583 -21.466 -16.811 27.272 Atomic orbital electron populations 1.22476 0.85602 1.02914 1.01017 1.61483 1.09527 1.11759 1.42268 1.21758 1.01457 0.89902 0.94363 1.20667 0.83763 0.82180 0.90313 1.90455 1.45049 1.65240 1.48919 1.41955 1.50077 1.11636 1.17694 1.19662 1.34333 0.96333 0.95668 0.90149 1.26064 0.96298 0.96688 1.02424 1.69679 1.38243 1.12681 1.35796 0.84920 0.78688 0.77388 0.77305 1.19824 1.19524 1.19520 1.22780 0.93177 0.95660 0.91920 0.91294 1.22840 0.98618 0.91693 1.02591 1.23096 0.80964 0.96876 1.03182 1.48393 1.08303 1.26171 1.52101 1.19903 0.81338 0.84228 0.80224 1.90659 1.34290 1.58733 1.61617 1.20878 0.93662 0.97861 1.03057 1.21552 0.86718 1.00850 1.02493 1.22968 1.00584 1.02827 0.95359 1.22984 1.02614 0.95738 1.00303 1.23541 0.96526 1.02115 0.95858 1.23784 0.98977 0.95188 1.01204 1.22033 0.96224 0.87314 0.95056 0.95213 0.88683 0.92619 0.91257 0.88637 0.77208 0.91344 0.89888 0.86865 0.88255 0.87201 0.84360 0.90737 0.87798 0.87804 0.90548 0.86432 0.85784 0.85876 0.85869 0.92468 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 8.99 127.69 1.15 1.93 16 2 N -0.53 -16.22 4.40 -893.42 -3.93 -20.15 16 3 C 0.06 2.01 5.36 85.56 0.46 2.47 16 4 C 0.44 21.41 7.54 87.66 0.66 22.07 16 5 O -0.61 -33.58 13.88 -3.06 -0.04 -33.63 16 6 N -0.58 -30.27 5.29 -306.98 -1.62 -31.90 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 10 N -0.92 -50.99 13.05 21.66 0.28 -50.71 16 11 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.07 1.65 2.73 46.31 0.13 1.78 16 16 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 17 C -0.12 -1.74 4.91 31.78 0.16 -1.59 16 18 C 0.08 0.98 5.06 86.73 0.44 1.42 16 19 N -0.62 -13.33 3.32 -811.78 -2.70 -16.03 16 20 C 0.55 13.85 7.32 87.66 0.64 14.49 16 21 O -0.57 -19.45 12.15 -3.04 -0.04 -19.48 16 22 C -0.15 -2.50 2.47 -52.93 -0.13 -2.63 16 23 C -0.10 -1.66 5.85 -10.80 -0.06 -1.72 16 24 C -0.18 -3.91 9.66 30.62 0.30 -3.62 16 25 C -0.18 -3.87 9.66 30.62 0.30 -3.57 16 26 C -0.14 -1.25 9.28 30.59 0.28 -0.97 16 27 C -0.16 -1.37 9.33 30.59 0.29 -1.09 16 28 C 0.12 3.14 5.80 86.86 0.50 3.64 16 29 H 0.03 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.09 2.05 6.33 -2.39 -0.02 2.03 16 31 H 0.06 2.11 5.98 -2.39 -0.01 2.10 16 32 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.10 3.25 7.21 -2.39 -0.02 3.23 16 34 H 0.39 19.90 7.90 -92.71 -0.73 19.17 16 35 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.08 1.41 7.93 -2.38 -0.02 1.39 16 37 H 0.11 1.03 7.96 -2.39 -0.02 1.01 16 38 H 0.10 0.92 5.42 -2.39 -0.01 0.90 16 39 H 0.11 0.80 4.74 -2.39 -0.01 0.78 16 40 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 2.13 6.30 -2.39 -0.02 2.11 16 42 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.16 6.26 -2.38 -0.01 2.14 16 45 H 0.12 0.87 5.11 -2.39 -0.01 0.86 16 46 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.12 0.94 4.33 -2.39 -0.01 0.93 16 49 H 0.06 1.72 7.86 -2.39 -0.02 1.70 16 50 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -76.18 384.01 0.60 -75.58 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: 0.24 Total: 36.59 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.38 Total: 14.02 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -7.97 Total: -118.78 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.08 Total: -53.11 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.18 0.60 -75.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190810206.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.324 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds