Wall clock time and date at job start Tue Mar 31 2020 18:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99752 * 2 1 4 4 C 1.50705 * 109.47148 * 293.95213 * 3 2 1 5 5 O 1.21293 * 119.99803 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99926 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00024 * 180.02562 * 6 4 3 8 8 H 1.08000 * 119.99990 * 359.97438 * 7 6 4 9 9 C 1.38954 * 120.00046 * 179.97438 * 7 6 4 10 10 N 1.31412 * 120.00102 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47107 * 120.00201 * 11 9 7 14 14 H 1.48504 * 109.47112 * 240.00567 * 11 9 7 15 15 C 1.46897 * 111.00103 * 123.95585 * 2 1 3 16 16 H 1.09000 * 110.88473 * 298.02575 * 15 2 1 17 17 C 1.55156 * 111.00635 * 61.90977 * 15 2 1 18 18 C 1.54323 * 102.94288 * 153.57578 * 17 15 2 19 19 N 1.47026 * 107.40497 * 337.73106 * 18 17 15 20 20 C 1.34775 * 125.65294 * 178.97724 * 19 18 17 21 21 O 1.21276 * 120.00209 * 183.97004 * 20 19 18 22 22 C 1.50701 * 119.99808 * 3.97228 * 20 19 18 23 23 C 1.52996 * 119.30016 * 255.88038 * 22 20 19 24 24 C 1.53003 * 60.37926 * 248.69271 * 23 22 20 25 25 H 1.09000 * 119.75563 * 111.11331 * 24 23 22 26 26 C 1.54267 * 118.19682 * 266.38492 * 24 23 22 27 27 C 1.54888 * 104.19518 * 87.78415 * 26 24 23 28 28 C 1.54268 * 117.41099 * 51.53130 * 22 20 19 29 29 C 1.47740 * 108.52986 * 359.06682 * 19 18 17 30 30 H 1.09000 * 109.46743 * 300.94864 * 1 2 3 31 31 H 1.08997 * 109.46946 * 60.94841 * 1 2 3 32 32 H 1.08998 * 109.46825 * 180.94751 * 1 2 3 33 33 H 1.08995 * 109.47435 * 53.95779 * 3 2 1 34 34 H 1.09007 * 109.46599 * 173.95708 * 3 2 1 35 35 H 0.97007 * 120.00122 * 0.02562 * 6 4 3 36 36 H 0.96995 * 120.00051 * 179.97438 * 10 9 7 37 37 H 1.09002 * 110.71672 * 35.21863 * 17 15 2 38 38 H 1.08993 * 110.87643 * 272.00974 * 17 15 2 39 39 H 1.09000 * 109.88388 * 97.22700 * 18 17 15 40 40 H 1.08999 * 109.88750 * 218.23681 * 18 17 15 41 41 H 1.09000 * 117.45758 * 356.28779 * 23 22 20 42 42 H 1.08995 * 117.46869 * 141.09381 * 23 22 20 43 43 H 1.09000 * 110.48623 * 206.46467 * 26 24 23 44 44 H 1.08996 * 110.48483 * 328.97211 * 26 24 23 45 45 H 1.09002 * 110.75380 * 80.37536 * 27 26 24 46 46 H 1.09000 * 110.75590 * 203.74184 * 27 26 24 47 47 H 1.08999 * 110.48940 * 235.04609 * 28 22 20 48 48 H 1.08998 * 110.48826 * 357.69613 * 28 22 20 49 49 H 1.08993 * 110.29496 * 265.17444 * 29 19 18 50 50 H 1.09001 * 110.47002 * 142.93735 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0188 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7047 8 1 1.1292 3.3990 -3.4548 9 6 2.0855 5.2470 -2.9368 10 7 2.7710 5.8987 -2.0244 11 14 1.6411 6.0846 -4.5463 12 1 0.8740 5.1419 -5.3996 13 1 0.8139 7.2858 -4.2673 14 1 2.8829 6.4916 -5.2518 15 6 1.9955 -0.7660 1.1375 16 1 1.6880 -0.3187 2.0828 17 6 1.5581 -2.2525 1.0572 18 6 2.6748 -2.9837 1.8318 19 7 3.8601 -2.1139 1.8202 20 6 5.0410 -2.3875 2.4092 21 8 5.9304 -1.5631 2.3966 22 6 5.2563 -3.7180 3.0835 23 6 5.2250 -3.7970 4.6111 24 6 6.5449 -4.0175 3.8693 25 1 7.3423 -3.2790 3.9529 26 6 6.9501 -5.4636 3.5167 27 6 6.2836 -5.7204 2.1423 28 6 4.9314 -4.9875 2.2695 29 6 3.5375 -0.8908 1.0569 30 1 -0.3633 0.5285 0.8814 31 1 -0.3633 0.4990 -0.8983 32 1 -0.3633 -1.0275 0.0170 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1082 35 1 2.5248 3.8009 -0.8502 36 1 3.0458 6.8146 -2.1865 37 1 1.5237 -2.5888 0.0210 38 1 0.5928 -2.4000 1.5414 39 1 2.3570 -3.1635 2.8588 40 1 2.9053 -3.9308 1.3441 41 1 5.1071 -2.8629 5.1603 42 1 4.7488 -4.6687 5.0598 43 1 8.0339 -5.5474 3.4367 44 1 6.5688 -6.1596 4.2638 45 1 6.8757 -5.2832 1.3382 46 1 6.1357 -6.7877 1.9781 47 1 4.2229 -5.6158 2.8092 48 1 4.5368 -4.7214 1.2889 49 1 3.8557 -0.9973 0.0199 50 1 4.0127 -0.0214 1.5114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191442839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:12 Heat of formation + Delta-G solvation = -29.650495 kcal Electronic energy + Delta-G solvation = -29298.307228 eV Core-core repulsion = 25326.400847 eV Total energy + Delta-G solvation = -3971.906381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93781 -39.39229 -38.32188 -37.40552 -35.46687 -33.81598 -32.06891 -31.28464 -31.02333 -29.64384 -28.24729 -27.84076 -25.04089 -24.63290 -23.22452 -22.99315 -21.42739 -20.67338 -20.24085 -19.15764 -18.81286 -17.83397 -17.22823 -16.78626 -15.97113 -15.81179 -15.62270 -14.96995 -14.67532 -14.59024 -14.32805 -14.20036 -13.78760 -13.67913 -13.59654 -13.39776 -13.32602 -13.01000 -12.91706 -12.59249 -12.12119 -12.04412 -11.84981 -11.56552 -11.51703 -11.44761 -11.36759 -11.33405 -11.22714 -11.00536 -10.92621 -10.77541 -10.70662 -10.33131 -10.21100 -10.05810 -9.81267 -9.47661 -8.76286 -8.48196 -7.98379 -7.88350 -6.40213 -3.81051 2.37753 2.70774 3.17349 3.25867 3.27885 3.34876 3.89979 3.93115 4.02314 4.17783 4.23472 4.25380 4.42141 4.49519 4.59442 4.83733 4.88480 4.97915 5.04992 5.07194 5.13040 5.18590 5.20421 5.26282 5.28503 5.32724 5.36104 5.48040 5.51731 5.60143 5.65009 5.68547 5.70057 5.71873 5.80362 5.83749 5.89028 5.89870 5.93012 6.00095 6.06125 6.15936 6.28824 6.53109 7.19057 7.31905 7.39905 7.56821 8.04605 8.07786 8.62978 9.19501 9.55870 10.07356 10.77589 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002190 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.703958 B =12783.065043 C =13465.749367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.506 5.506 3 C 0.042 3.958 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.069 3.931 16 H 0.054 0.946 17 C -0.123 4.123 18 C 0.103 3.897 19 N -0.613 5.613 20 C 0.571 3.429 21 O -0.538 6.538 22 C -0.174 4.174 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.120 0.880 26 C -0.096 4.096 27 C -0.124 4.124 28 C -0.085 4.085 29 C 0.112 3.888 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 -22.846 14.900 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.231 5.231 3 C -0.090 4.090 4 C 0.230 3.770 5 O -0.462 6.462 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.207 1.207 15 C -0.041 4.041 16 H 0.072 0.928 17 C -0.161 4.161 18 C -0.021 4.021 19 N -0.347 5.347 20 C 0.359 3.641 21 O -0.415 6.415 22 C -0.177 4.177 23 C -0.160 4.160 24 C -0.147 4.147 25 H 0.137 0.863 26 C -0.134 4.134 27 C -0.162 4.162 28 C -0.122 4.122 29 C -0.010 4.010 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.969 -22.852 13.894 26.909 hybrid contribution -0.181 1.384 0.405 1.453 sum 2.788 -21.468 14.299 25.944 Atomic orbital electron populations 1.22548 0.86174 1.01453 1.02280 1.61624 1.08895 1.12885 1.39674 1.21941 1.00845 0.88777 0.97389 1.19668 0.85497 0.82936 0.88849 1.90477 1.43989 1.64628 1.47118 1.41875 1.49311 1.10775 1.18098 1.19739 1.32844 0.95403 0.94741 0.87837 1.25273 0.96840 0.96691 0.99226 1.69622 1.38003 1.12223 1.34401 0.85803 0.78206 0.79001 0.81345 1.19219 1.20802 1.20749 1.22765 0.93904 0.94341 0.93041 0.92776 1.22711 0.97424 0.93979 1.02034 1.22141 0.85075 0.94228 1.00641 1.48349 1.12009 1.20817 1.53499 1.18985 0.80516 0.86970 0.77586 1.90720 1.42180 1.48817 1.59745 1.22284 1.07239 0.94062 0.94085 1.23101 0.99134 1.03604 0.90190 1.23386 0.90920 0.98407 1.02017 0.86251 1.21994 1.00900 0.93656 0.96802 1.22600 0.95781 1.00214 0.97573 1.21893 0.97965 0.92839 0.99547 1.22336 0.94418 0.87267 0.97014 0.96645 0.88277 0.92027 0.93321 0.89323 0.77481 0.91918 0.89037 0.90067 0.91411 0.90861 0.87994 0.87990 0.90823 0.91051 0.91128 0.90837 0.90730 0.90494 0.89840 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.05 60.07 0.54 0.90 16 2 N -0.51 -8.11 4.40 -233.74 -1.03 -9.14 16 3 C 0.04 0.75 5.33 -4.97 -0.03 0.72 16 4 C 0.45 10.47 7.51 -10.99 -0.08 10.39 16 5 O -0.58 -15.33 13.88 5.55 0.08 -15.25 16 6 N -0.56 -14.39 5.29 -10.96 -0.06 -14.44 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 11 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.07 0.87 2.71 -65.56 -0.18 0.69 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.12 -1.19 5.34 -24.90 -0.13 -1.32 16 18 C 0.10 0.89 6.00 -3.06 -0.02 0.87 16 19 N -0.61 -7.37 3.34 -170.26 -0.57 -7.94 16 20 C 0.57 7.61 7.39 -10.99 -0.08 7.53 16 21 O -0.54 -9.37 17.05 5.56 0.09 -9.28 16 22 C -0.17 -1.65 2.20 -154.54 -0.34 -1.99 16 23 C -0.12 -0.94 9.87 -26.73 -0.26 -1.21 16 24 C -0.13 -1.12 6.55 -89.50 -0.59 -1.71 16 25 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 26 C -0.10 -0.63 6.63 -25.07 -0.17 -0.79 16 27 C -0.12 -0.84 6.88 -25.04 -0.17 -1.01 16 28 C -0.09 -0.62 5.23 -25.37 -0.13 -0.75 16 29 C 0.11 1.53 5.38 -2.35 -0.01 1.51 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 1.88 5.90 -51.93 -0.31 1.57 16 32 H 0.06 0.78 6.96 -51.93 -0.36 0.42 16 33 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.09 1.50 6.69 -51.92 -0.35 1.15 16 35 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 0.64 7.99 -51.93 -0.41 0.23 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 5.84 -51.93 -0.30 0.24 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.61 6.26 -51.93 -0.33 0.28 16 49 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.08 1.15 7.65 -51.93 -0.40 0.75 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -33.19 393.74 -9.94 -43.13 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.21 Total: 9.05 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.89 Total: 5.84 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.93 Total: -55.60 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.17 Total: -24.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.19 -9.94 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191442839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.481 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds