Wall clock time and date at job start Tue Mar 31 2020 18:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99752 * 2 1 4 4 C 1.50705 * 109.47148 * 293.95213 * 3 2 1 5 5 O 1.21293 * 119.99803 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99926 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00024 * 180.02562 * 6 4 3 8 8 H 1.08000 * 119.99990 * 359.97438 * 7 6 4 9 9 C 1.38954 * 120.00046 * 179.97438 * 7 6 4 10 10 N 1.31412 * 120.00102 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99987 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47107 * 120.00201 * 11 9 7 14 14 H 1.48504 * 109.47112 * 240.00567 * 11 9 7 15 15 C 1.46897 * 111.00103 * 123.95585 * 2 1 3 16 16 H 1.09000 * 110.88473 * 298.02575 * 15 2 1 17 17 C 1.55156 * 111.00635 * 61.90977 * 15 2 1 18 18 C 1.54323 * 102.94288 * 153.57578 * 17 15 2 19 19 N 1.47026 * 107.40497 * 337.73106 * 18 17 15 20 20 C 1.34775 * 125.65294 * 178.97724 * 19 18 17 21 21 O 1.21276 * 120.00209 * 183.97004 * 20 19 18 22 22 C 1.50701 * 119.99808 * 3.97228 * 20 19 18 23 23 C 1.52996 * 119.30016 * 255.88038 * 22 20 19 24 24 C 1.53003 * 60.37926 * 248.69271 * 23 22 20 25 25 H 1.09000 * 119.75563 * 111.11331 * 24 23 22 26 26 C 1.54267 * 118.19682 * 266.38492 * 24 23 22 27 27 C 1.54888 * 104.19518 * 87.78415 * 26 24 23 28 28 C 1.54268 * 117.41099 * 51.53130 * 22 20 19 29 29 C 1.47740 * 108.52986 * 359.06682 * 19 18 17 30 30 H 1.09000 * 109.46743 * 300.94864 * 1 2 3 31 31 H 1.08997 * 109.46946 * 60.94841 * 1 2 3 32 32 H 1.08998 * 109.46825 * 180.94751 * 1 2 3 33 33 H 1.08995 * 109.47435 * 53.95779 * 3 2 1 34 34 H 1.09007 * 109.46599 * 173.95708 * 3 2 1 35 35 H 0.97007 * 120.00122 * 0.02562 * 6 4 3 36 36 H 0.96995 * 120.00051 * 179.97438 * 10 9 7 37 37 H 1.09002 * 110.71672 * 35.21863 * 17 15 2 38 38 H 1.08993 * 110.87643 * 272.00974 * 17 15 2 39 39 H 1.09000 * 109.88388 * 97.22700 * 18 17 15 40 40 H 1.08999 * 109.88750 * 218.23681 * 18 17 15 41 41 H 1.09000 * 117.45758 * 356.28779 * 23 22 20 42 42 H 1.08995 * 117.46869 * 141.09381 * 23 22 20 43 43 H 1.09000 * 110.48623 * 206.46467 * 26 24 23 44 44 H 1.08996 * 110.48483 * 328.97211 * 26 24 23 45 45 H 1.09002 * 110.75380 * 80.37536 * 27 26 24 46 46 H 1.09000 * 110.75590 * 203.74184 * 27 26 24 47 47 H 1.08999 * 110.48940 * 235.04609 * 28 22 20 48 48 H 1.08998 * 110.48826 * 357.69613 * 28 22 20 49 49 H 1.08993 * 110.29496 * 265.17444 * 29 19 18 50 50 H 1.09001 * 110.47002 * 142.93735 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0046 1.4455 -2.1408 6 7 2.0188 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7047 8 1 1.1292 3.3990 -3.4548 9 6 2.0855 5.2470 -2.9368 10 7 2.7710 5.8987 -2.0244 11 14 1.6411 6.0846 -4.5463 12 1 0.8740 5.1419 -5.3996 13 1 0.8139 7.2858 -4.2673 14 1 2.8829 6.4916 -5.2518 15 6 1.9955 -0.7660 1.1375 16 1 1.6880 -0.3187 2.0828 17 6 1.5581 -2.2525 1.0572 18 6 2.6748 -2.9837 1.8318 19 7 3.8601 -2.1139 1.8202 20 6 5.0410 -2.3875 2.4092 21 8 5.9304 -1.5631 2.3966 22 6 5.2563 -3.7180 3.0835 23 6 5.2250 -3.7970 4.6111 24 6 6.5449 -4.0175 3.8693 25 1 7.3423 -3.2790 3.9529 26 6 6.9501 -5.4636 3.5167 27 6 6.2836 -5.7204 2.1423 28 6 4.9314 -4.9875 2.2695 29 6 3.5375 -0.8908 1.0569 30 1 -0.3633 0.5285 0.8814 31 1 -0.3633 0.4990 -0.8983 32 1 -0.3633 -1.0275 0.0170 33 1 1.5611 1.9273 0.8309 34 1 3.0798 1.3444 0.1082 35 1 2.5248 3.8009 -0.8502 36 1 3.0458 6.8146 -2.1865 37 1 1.5237 -2.5888 0.0210 38 1 0.5928 -2.4000 1.5414 39 1 2.3570 -3.1635 2.8588 40 1 2.9053 -3.9308 1.3441 41 1 5.1071 -2.8629 5.1603 42 1 4.7488 -4.6687 5.0598 43 1 8.0339 -5.5474 3.4367 44 1 6.5688 -6.1596 4.2638 45 1 6.8757 -5.2832 1.3382 46 1 6.1357 -6.7877 1.9781 47 1 4.2229 -5.6158 2.8092 48 1 4.5368 -4.7214 1.2889 49 1 3.8557 -0.9973 0.0199 50 1 4.0127 -0.0214 1.5114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191442839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:11 Heat of formation + Delta-G solvation = -52.512473 kcal Electronic energy + Delta-G solvation = -29299.298598 eV Core-core repulsion = 25326.400847 eV Total energy + Delta-G solvation = -3972.897751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78159 -40.60123 -39.71605 -38.59271 -36.77911 -35.79744 -33.30188 -32.64412 -32.07644 -30.52798 -29.33944 -28.96976 -26.74886 -25.79777 -24.36893 -23.71801 -22.17160 -21.47164 -21.25421 -20.85625 -19.88213 -19.67404 -18.12435 -17.94351 -17.46574 -16.87146 -16.61276 -16.47222 -16.10026 -15.90798 -15.57815 -15.33563 -15.11996 -14.97156 -14.57290 -14.32919 -14.16207 -13.93737 -13.87521 -13.76955 -13.58481 -13.40492 -13.10359 -12.83214 -12.76652 -12.59775 -12.46709 -12.39387 -12.12464 -12.09330 -12.01000 -11.92851 -11.85013 -11.69833 -11.47645 -11.38016 -10.77354 -10.66029 -10.30568 -10.01904 -9.74274 -9.28077 -8.47647 -5.96526 1.35418 1.40367 1.42151 1.54941 1.77020 2.03094 2.27202 2.57771 2.73378 3.18584 3.25324 3.38312 3.48232 3.60197 3.65100 3.72231 3.86827 4.02188 4.14759 4.24983 4.26495 4.29744 4.37052 4.42469 4.46021 4.48515 4.56884 4.57520 4.65533 4.70990 4.72077 4.75773 4.80178 4.83896 4.93154 4.98827 5.03843 5.11809 5.17434 5.20733 5.22078 5.28013 5.29121 5.40352 5.46250 5.82545 6.02634 6.17072 6.44832 6.58651 7.04506 7.11566 7.54553 8.09775 8.70187 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002190 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.703958 B =12783.065043 C =13465.749367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.055 3.945 4 C 0.444 3.556 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.329 4.329 8 H 0.081 0.919 9 C -0.017 4.017 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.271 1.271 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.115 4.115 18 C 0.102 3.898 19 N -0.611 5.611 20 C 0.560 3.440 21 O -0.595 6.595 22 C -0.184 4.184 23 C -0.102 4.102 24 C -0.142 4.142 25 H 0.092 0.908 26 C -0.089 4.089 27 C -0.125 4.125 28 C -0.079 4.079 29 C 0.111 3.889 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.048 0.952 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 -25.441 16.502 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.248 5.248 3 C -0.077 4.077 4 C 0.231 3.769 5 O -0.495 6.495 6 N -0.214 5.214 7 C -0.459 4.459 8 H 0.099 0.901 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.035 4.035 16 H 0.085 0.915 17 C -0.153 4.153 18 C -0.020 4.020 19 N -0.343 5.343 20 C 0.351 3.649 21 O -0.476 6.476 22 C -0.187 4.187 23 C -0.139 4.139 24 C -0.161 4.161 25 H 0.110 0.890 26 C -0.126 4.126 27 C -0.162 4.162 28 C -0.116 4.116 29 C -0.012 4.012 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.228 0.772 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.154 0.846 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.067 0.933 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.685 -25.478 15.518 29.879 hybrid contribution 0.240 2.173 -0.082 2.187 sum 1.924 -23.305 15.436 28.020 Atomic orbital electron populations 1.22445 0.85588 1.03083 1.00794 1.61553 1.09532 1.11647 1.42049 1.21759 1.01476 0.90033 0.94406 1.20635 0.83778 0.82192 0.90260 1.90455 1.45016 1.65215 1.48858 1.41968 1.50015 1.11662 1.17736 1.19705 1.34238 0.96333 0.95617 0.90071 1.26089 0.96303 0.96716 1.02487 1.69691 1.38223 1.12679 1.35830 0.84846 0.78210 0.77910 0.77218 1.19571 1.19528 1.19800 1.22774 0.92659 0.95948 0.92071 0.91537 1.22738 0.99121 0.91196 1.02210 1.22391 0.83171 0.94054 1.02351 1.48452 1.12828 1.20612 1.52445 1.19804 0.79993 0.87949 0.77177 1.90684 1.44014 1.50906 1.61987 1.22338 1.08375 0.92703 0.95236 1.23206 0.97750 1.04426 0.88543 1.23482 0.90616 0.99325 1.02681 0.88964 1.22003 1.01064 0.92343 0.97227 1.22621 0.95278 1.01376 0.96954 1.21932 0.98781 0.91858 0.99059 1.22176 0.95463 0.87747 0.95850 0.95224 0.92428 0.88937 0.91468 0.88613 0.77237 0.91362 0.89865 0.87107 0.88773 0.88913 0.88998 0.84641 0.90892 0.88668 0.93272 0.88517 0.87718 0.91323 0.92104 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.05 127.69 1.16 1.99 16 2 N -0.52 -16.44 4.40 -893.42 -3.93 -20.37 16 3 C 0.05 1.98 5.33 85.56 0.46 2.43 16 4 C 0.44 21.58 7.51 87.66 0.66 22.24 16 5 O -0.61 -33.56 13.88 -3.07 -0.04 -33.60 16 6 N -0.58 -30.48 5.29 -306.99 -1.62 -32.10 16 7 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 10 N -0.92 -51.24 13.05 21.66 0.28 -50.96 16 11 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 15 C 0.07 1.75 2.71 46.31 0.13 1.88 16 16 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 17 C -0.11 -1.84 5.34 31.78 0.17 -1.67 16 18 C 0.10 1.45 6.00 86.73 0.52 1.97 16 19 N -0.61 -14.23 3.34 -810.98 -2.71 -16.94 16 20 C 0.56 15.05 7.39 87.66 0.65 15.69 16 21 O -0.59 -22.02 17.05 -3.02 -0.05 -22.07 16 22 C -0.18 -3.20 2.20 -52.20 -0.11 -3.31 16 23 C -0.10 -1.31 9.87 30.59 0.30 -1.01 16 24 C -0.14 -2.36 6.55 -10.07 -0.07 -2.42 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 26 C -0.09 -0.96 6.63 31.67 0.21 -0.75 16 27 C -0.12 -1.39 6.88 31.69 0.22 -1.17 16 28 C -0.08 -0.91 5.23 31.48 0.16 -0.75 16 29 C 0.11 3.07 5.38 86.80 0.47 3.54 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.06 2.21 5.90 -2.39 -0.01 2.19 16 32 H 0.09 2.10 6.96 -2.39 -0.02 2.08 16 33 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 34 H 0.10 3.33 6.69 -2.38 -0.02 3.32 16 35 H 0.39 20.08 7.90 -92.70 -0.73 19.35 16 36 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.19 7.99 -2.39 -0.02 1.17 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.02 5.84 -2.39 -0.01 1.01 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.91 6.26 -2.39 -0.01 0.90 16 49 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.06 1.83 7.65 -2.39 -0.02 1.82 16 Total: -1.00 -76.80 393.74 0.37 -76.44 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.21 Total: 33.79 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.19 Total: 19.98 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -7.97 Total: -120.37 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -0.09 Total: -55.67 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.80 0.37 -76.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191442839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.926 kcal (2) G-P(sol) polarization free energy of solvation -76.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds