Wall clock time and date at job start Tue Mar 31 2020 18:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99781 * 2 1 4 4 C 1.50696 * 109.47429 * 293.95248 * 3 2 1 5 5 O 1.21295 * 119.99880 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00357 * 180.02562 * 4 3 2 7 7 C 1.37086 * 120.00220 * 180.02562 * 6 4 3 8 8 H 1.08006 * 120.00462 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00163 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00050 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47112 * 90.00305 * 11 9 7 13 13 H 1.48499 * 109.47217 * 209.99934 * 11 9 7 14 14 H 1.48501 * 109.47343 * 330.00270 * 11 9 7 15 15 C 1.46898 * 111.00172 * 123.95405 * 2 1 3 16 16 H 1.09000 * 110.88499 * 298.47581 * 15 2 1 17 17 C 1.55150 * 111.00861 * 174.59577 * 15 2 1 18 18 C 1.54328 * 102.94287 * 206.42345 * 17 15 2 19 19 N 1.47018 * 107.27151 * 22.19279 * 18 17 15 20 20 C 1.34774 * 125.64998 * 181.02149 * 19 18 17 21 21 O 1.21277 * 120.00049 * 185.13305 * 20 19 18 22 22 C 1.50702 * 120.00047 * 5.13727 * 20 19 18 23 23 C 1.52995 * 119.75511 * 125.70740 * 22 20 19 24 24 C 1.53000 * 60.37948 * 248.87819 * 23 22 20 25 25 H 1.09001 * 119.75166 * 111.12234 * 24 23 22 26 26 C 1.54265 * 118.19870 * 266.38562 * 24 23 22 27 27 C 1.54886 * 104.19552 * 87.79094 * 26 24 23 28 28 C 1.54271 * 117.40798 * 281.16292 * 22 20 19 29 29 C 1.47432 * 108.70440 * 1.28508 * 19 18 17 30 30 H 1.08993 * 109.47260 * 296.04808 * 1 2 3 31 31 H 1.09005 * 109.47097 * 56.04588 * 1 2 3 32 32 H 1.09004 * 109.46813 * 176.04236 * 1 2 3 33 33 H 1.09002 * 109.47177 * 53.95681 * 3 2 1 34 34 H 1.09005 * 109.46651 * 173.94769 * 3 2 1 35 35 H 0.96997 * 119.99298 * 359.97438 * 6 4 3 36 36 H 0.97002 * 120.00607 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.72311 * 88.05793 * 17 15 2 38 38 H 1.09004 * 110.86868 * 324.85509 * 17 15 2 39 39 H 1.08993 * 109.88320 * 262.77216 * 18 17 15 40 40 H 1.09002 * 109.88270 * 141.60637 * 18 17 15 41 41 H 1.09003 * 117.45762 * 141.28030 * 23 22 20 42 42 H 1.09000 * 117.46431 * 356.48400 * 23 22 20 43 43 H 1.09011 * 110.48458 * 206.46809 * 26 24 23 44 44 H 1.08992 * 110.48674 * 329.10596 * 26 24 23 45 45 H 1.09002 * 110.75384 * 80.37194 * 27 26 24 46 46 H 1.09000 * 110.75216 * 203.55191 * 27 26 24 47 47 H 1.08997 * 110.48686 * 357.68806 * 28 22 20 48 48 H 1.08999 * 110.59290 * 235.09719 * 28 22 20 49 49 H 1.08997 * 110.36622 * 94.47999 * 29 19 18 50 50 H 1.08996 * 110.36750 * 216.80852 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1412 6 7 2.0188 3.3200 -1.5237 7 6 1.6923 3.9348 -2.7046 8 1 1.1293 3.3992 -3.4547 9 6 2.0856 5.2471 -2.9367 10 7 2.7710 5.8987 -2.0243 11 14 1.6412 6.0847 -4.5461 12 1 0.3290 6.7652 -4.4042 13 1 2.6835 7.0858 -4.8874 14 1 1.5578 5.0690 -5.6262 15 6 1.9955 -0.7660 1.1376 16 1 1.6814 -0.3232 2.0828 17 6 3.5409 -0.8805 1.0634 18 6 3.8283 -2.1855 1.8355 19 7 2.5945 -2.9848 1.8162 20 6 2.4287 -4.1878 2.4007 21 8 1.3946 -4.8015 2.2425 22 6 3.5281 -4.7705 3.2508 23 6 3.2271 -5.2097 4.6851 24 6 4.1192 -3.9913 4.4388 25 1 3.7593 -2.9959 4.6990 26 6 5.6463 -4.2041 4.3893 27 6 5.9334 -4.5526 2.9077 28 6 4.7167 -5.4295 2.5208 29 6 1.5705 -2.2552 1.0463 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5611 1.9274 0.8310 34 1 3.0797 1.3444 0.1084 35 1 2.5241 3.8011 -0.8499 36 1 3.0453 6.8150 -2.1860 37 1 4.0147 -0.0300 1.5537 38 1 3.8751 -0.9628 0.0291 39 1 4.1042 -1.9545 2.8643 40 1 4.6335 -2.7351 1.3480 41 1 3.7075 -6.1202 5.0433 42 1 2.2221 -5.0281 5.0660 43 1 6.1682 -3.2905 4.6744 44 1 5.9377 -5.0294 5.0388 45 1 5.9682 -3.6495 2.2982 46 1 6.8629 -5.1145 2.8163 47 1 4.5601 -5.4102 1.4423 48 1 4.8591 -6.4533 2.8666 49 1 1.5674 -2.5882 0.0084 50 1 0.5868 -2.3967 1.4940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191442840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:15 Heat of formation + Delta-G solvation = -29.584160 kcal Electronic energy + Delta-G solvation = -29472.327184 eV Core-core repulsion = 25500.423679 eV Total energy + Delta-G solvation = -3971.903505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03724 -39.33284 -38.36548 -37.51011 -35.46076 -33.84173 -32.11541 -31.27049 -30.97902 -29.45179 -28.71454 -27.53638 -25.52979 -24.40388 -23.18941 -22.78904 -21.75304 -20.65695 -20.25837 -19.19678 -18.84005 -17.86230 -17.26851 -16.80418 -15.99252 -15.95282 -15.65302 -14.91082 -14.73835 -14.43879 -14.38405 -14.15147 -13.89072 -13.72194 -13.57097 -13.49521 -13.35607 -12.95684 -12.89267 -12.66934 -12.20321 -12.10498 -11.90475 -11.55308 -11.53008 -11.47809 -11.43134 -11.33172 -11.15832 -10.98190 -10.94220 -10.82897 -10.71880 -10.40131 -10.23844 -10.22161 -9.74284 -9.49288 -8.80389 -8.49076 -8.00882 -7.91112 -6.43391 -3.84049 2.38383 2.63034 3.16634 3.19094 3.25595 3.31499 3.88281 3.92209 3.99214 4.15741 4.21835 4.26021 4.37406 4.51151 4.55138 4.69972 4.86810 4.93623 4.99969 5.05123 5.11600 5.14744 5.17777 5.22505 5.26859 5.36042 5.38781 5.46130 5.49840 5.60088 5.64588 5.64928 5.68167 5.69585 5.75742 5.79767 5.86713 5.88233 5.92879 5.94043 6.05378 6.13667 6.26238 6.53208 7.17467 7.32400 7.34783 7.53875 8.00050 8.04755 8.60130 9.16746 9.52654 10.04526 10.74353 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024575 B = 0.002159 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.078413 B =12963.010407 C =13580.825695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.507 5.507 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.564 5.564 7 C -0.298 4.298 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.070 3.930 16 H 0.055 0.945 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.612 5.612 20 C 0.571 3.429 21 O -0.537 6.537 22 C -0.165 4.165 23 C -0.117 4.117 24 C -0.149 4.149 25 H 0.114 0.886 26 C -0.096 4.096 27 C -0.127 4.127 28 C -0.078 4.078 29 C 0.117 3.883 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 -17.523 15.941 24.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.231 5.231 3 C -0.086 4.086 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.201 5.201 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.040 4.040 16 H 0.072 0.928 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.346 5.346 20 C 0.359 3.641 21 O -0.414 6.414 22 C -0.169 4.169 23 C -0.154 4.154 24 C -0.167 4.167 25 H 0.132 0.868 26 C -0.133 4.133 27 C -0.165 4.165 28 C -0.116 4.116 29 C -0.005 4.005 30 H 0.034 0.966 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.177 -18.352 14.859 24.680 hybrid contribution -0.161 1.363 0.390 1.427 sum 7.016 -16.989 15.250 23.883 Atomic orbital electron populations 1.22580 0.86332 1.02241 1.01642 1.61609 1.08851 1.12927 1.39699 1.21876 1.00820 0.88596 0.97273 1.19700 0.85511 0.82957 0.88900 1.90495 1.43868 1.64616 1.47065 1.41858 1.49420 1.10755 1.18058 1.19691 1.32865 0.95438 0.94748 0.87907 1.25255 0.96810 0.96662 0.99230 1.69607 1.38046 1.12228 1.34497 0.85864 0.78015 0.78913 0.81547 1.20441 1.20935 1.19396 1.22814 0.94923 0.93282 0.92982 0.92755 1.22789 0.95379 0.96304 1.02278 1.22183 0.87172 0.91854 1.00704 1.48370 1.14494 1.18680 1.53024 1.19012 0.86987 0.79225 0.78903 1.90707 1.29321 1.59324 1.62012 1.22276 0.98131 1.06297 0.90147 1.23085 1.00644 0.98170 0.93492 1.23493 0.94456 0.97334 1.01422 0.86809 1.21990 0.92540 1.02022 0.96753 1.22818 0.97692 0.99983 0.95964 1.21835 0.90927 0.98892 0.99950 1.22251 0.91505 0.89838 0.96948 0.96618 0.88286 0.91972 0.93438 0.89230 0.77525 0.91884 0.89846 0.88901 0.91199 0.90979 0.87960 0.87977 0.90737 0.91031 0.90692 0.90791 0.90993 0.90489 0.89912 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.01 60.06 0.54 0.86 16 2 N -0.51 -8.06 4.40 -233.60 -1.03 -9.09 16 3 C 0.05 0.77 5.32 -4.98 -0.03 0.75 16 4 C 0.44 10.16 7.47 -10.99 -0.08 10.08 16 5 O -0.58 -15.16 13.91 5.54 0.08 -15.08 16 6 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 7 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 11 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.07 0.86 2.72 -65.45 -0.18 0.69 16 16 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.13 -1.32 5.31 -24.90 -0.13 -1.45 16 18 C 0.10 0.93 5.87 -3.06 -0.02 0.91 16 19 N -0.61 -7.11 3.32 -170.38 -0.57 -7.67 16 20 C 0.57 7.33 7.24 -10.99 -0.08 7.25 16 21 O -0.54 -9.05 17.39 5.56 0.10 -8.96 16 22 C -0.17 -1.53 1.98 -154.54 -0.31 -1.83 16 23 C -0.12 -0.92 9.87 -26.73 -0.26 -1.18 16 24 C -0.15 -1.04 5.55 -89.50 -0.50 -1.54 16 25 H 0.11 0.81 7.54 -51.93 -0.39 0.42 16 26 C -0.10 -0.51 6.62 -25.07 -0.17 -0.68 16 27 C -0.13 -0.72 6.77 -24.74 -0.17 -0.88 16 28 C -0.08 -0.59 6.43 -25.07 -0.16 -0.75 16 29 C 0.12 1.51 5.37 -2.40 -0.01 1.50 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 1.93 5.83 -51.93 -0.30 1.63 16 32 H 0.06 0.90 7.15 -51.93 -0.37 0.53 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 34 H 0.09 1.34 6.73 -51.93 -0.35 0.99 16 35 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.52 6.54 -51.93 -0.34 0.18 16 40 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.43 5.99 -51.93 -0.31 0.11 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.61 8.00 -51.93 -0.42 0.19 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.08 1.02 7.95 -51.93 -0.41 0.60 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -32.60 391.80 -9.78 -42.37 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.11 Total: 8.29 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.79 Total: 5.89 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.93 Total: -54.23 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: 0.17 Total: -24.04 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.60 -9.78 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191442840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.787 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds