Wall clock time and date at job start Tue Mar 31 2020 18:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99781 * 2 1 4 4 C 1.50696 * 109.47429 * 293.95248 * 3 2 1 5 5 O 1.21295 * 119.99880 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00357 * 180.02562 * 4 3 2 7 7 C 1.37086 * 120.00220 * 180.02562 * 6 4 3 8 8 H 1.08006 * 120.00462 * 359.97438 * 7 6 4 9 9 C 1.38951 * 120.00163 * 179.97438 * 7 6 4 10 10 N 1.31409 * 120.00050 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00138 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47112 * 90.00305 * 11 9 7 13 13 H 1.48499 * 109.47217 * 209.99934 * 11 9 7 14 14 H 1.48501 * 109.47343 * 330.00270 * 11 9 7 15 15 C 1.46898 * 111.00172 * 123.95405 * 2 1 3 16 16 H 1.09000 * 110.88499 * 298.47581 * 15 2 1 17 17 C 1.55150 * 111.00861 * 174.59577 * 15 2 1 18 18 C 1.54328 * 102.94287 * 206.42345 * 17 15 2 19 19 N 1.47018 * 107.27151 * 22.19279 * 18 17 15 20 20 C 1.34774 * 125.64998 * 181.02149 * 19 18 17 21 21 O 1.21277 * 120.00049 * 185.13305 * 20 19 18 22 22 C 1.50702 * 120.00047 * 5.13727 * 20 19 18 23 23 C 1.52995 * 119.75511 * 125.70740 * 22 20 19 24 24 C 1.53000 * 60.37948 * 248.87819 * 23 22 20 25 25 H 1.09001 * 119.75166 * 111.12234 * 24 23 22 26 26 C 1.54265 * 118.19870 * 266.38562 * 24 23 22 27 27 C 1.54886 * 104.19552 * 87.79094 * 26 24 23 28 28 C 1.54271 * 117.40798 * 281.16292 * 22 20 19 29 29 C 1.47432 * 108.70440 * 1.28508 * 19 18 17 30 30 H 1.08993 * 109.47260 * 296.04808 * 1 2 3 31 31 H 1.09005 * 109.47097 * 56.04588 * 1 2 3 32 32 H 1.09004 * 109.46813 * 176.04236 * 1 2 3 33 33 H 1.09002 * 109.47177 * 53.95681 * 3 2 1 34 34 H 1.09005 * 109.46651 * 173.94769 * 3 2 1 35 35 H 0.96997 * 119.99298 * 359.97438 * 6 4 3 36 36 H 0.97002 * 120.00607 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.72311 * 88.05793 * 17 15 2 38 38 H 1.09004 * 110.86868 * 324.85509 * 17 15 2 39 39 H 1.08993 * 109.88320 * 262.77216 * 18 17 15 40 40 H 1.09002 * 109.88270 * 141.60637 * 18 17 15 41 41 H 1.09003 * 117.45762 * 141.28030 * 23 22 20 42 42 H 1.09000 * 117.46431 * 356.48400 * 23 22 20 43 43 H 1.09011 * 110.48458 * 206.46809 * 26 24 23 44 44 H 1.08992 * 110.48674 * 329.10596 * 26 24 23 45 45 H 1.09002 * 110.75384 * 80.37194 * 27 26 24 46 46 H 1.09000 * 110.75216 * 203.55191 * 27 26 24 47 47 H 1.08997 * 110.48686 * 357.68806 * 28 22 20 48 48 H 1.08999 * 110.59290 * 235.09719 * 28 22 20 49 49 H 1.08997 * 110.36622 * 94.47999 * 29 19 18 50 50 H 1.08996 * 110.36750 * 216.80852 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 8 1.0054 1.4453 -2.1412 6 7 2.0188 3.3200 -1.5237 7 6 1.6923 3.9348 -2.7046 8 1 1.1293 3.3992 -3.4547 9 6 2.0856 5.2471 -2.9367 10 7 2.7710 5.8987 -2.0243 11 14 1.6412 6.0847 -4.5461 12 1 0.3290 6.7652 -4.4042 13 1 2.6835 7.0858 -4.8874 14 1 1.5578 5.0690 -5.6262 15 6 1.9955 -0.7660 1.1376 16 1 1.6814 -0.3232 2.0828 17 6 3.5409 -0.8805 1.0634 18 6 3.8283 -2.1855 1.8355 19 7 2.5945 -2.9848 1.8162 20 6 2.4287 -4.1878 2.4007 21 8 1.3946 -4.8015 2.2425 22 6 3.5281 -4.7705 3.2508 23 6 3.2271 -5.2097 4.6851 24 6 4.1192 -3.9913 4.4388 25 1 3.7593 -2.9959 4.6990 26 6 5.6463 -4.2041 4.3893 27 6 5.9334 -4.5526 2.9077 28 6 4.7167 -5.4295 2.5208 29 6 1.5705 -2.2552 1.0463 30 1 -0.3633 0.4512 0.9232 31 1 -0.3633 0.5740 -0.8525 32 1 -0.3633 -1.0253 -0.0709 33 1 1.5611 1.9274 0.8310 34 1 3.0797 1.3444 0.1084 35 1 2.5241 3.8011 -0.8499 36 1 3.0453 6.8150 -2.1860 37 1 4.0147 -0.0300 1.5537 38 1 3.8751 -0.9628 0.0291 39 1 4.1042 -1.9545 2.8643 40 1 4.6335 -2.7351 1.3480 41 1 3.7075 -6.1202 5.0433 42 1 2.2221 -5.0281 5.0660 43 1 6.1682 -3.2905 4.6744 44 1 5.9377 -5.0294 5.0388 45 1 5.9682 -3.6495 2.2982 46 1 6.8629 -5.1145 2.8163 47 1 4.5601 -5.4102 1.4423 48 1 4.8591 -6.4533 2.8666 49 1 1.5674 -2.5882 0.0084 50 1 0.5868 -2.3967 1.4940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191442840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:14 Heat of formation + Delta-G solvation = -51.714625 kcal Electronic energy + Delta-G solvation = -29473.286833 eV Core-core repulsion = 25500.423679 eV Total energy + Delta-G solvation = -3972.863154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83942 -40.54784 -39.63893 -38.69693 -36.75695 -35.76628 -33.26222 -32.64559 -31.93958 -30.52891 -29.39014 -28.79954 -27.03605 -25.81217 -24.23301 -23.50732 -22.49362 -21.40987 -21.16679 -20.85921 -19.86725 -19.65052 -18.15595 -17.84445 -17.56051 -16.88808 -16.61538 -16.44640 -16.07861 -15.83305 -15.39781 -15.25069 -15.18602 -14.90148 -14.77391 -14.29846 -14.04591 -14.00585 -13.85818 -13.77699 -13.59237 -13.43108 -13.07033 -12.95736 -12.81542 -12.61970 -12.41347 -12.27470 -12.12645 -12.03098 -12.00530 -11.88084 -11.84728 -11.75850 -11.44439 -11.32601 -10.95180 -10.51162 -10.27652 -9.97858 -9.75918 -9.27773 -8.44937 -5.92784 1.38445 1.42551 1.43821 1.54671 1.73946 2.08022 2.29718 2.55943 2.76213 3.21204 3.23547 3.41958 3.47955 3.62267 3.67029 3.76914 3.83451 4.02570 4.13333 4.20977 4.26029 4.31442 4.37435 4.43342 4.50550 4.52714 4.55486 4.56563 4.65158 4.67345 4.69426 4.76464 4.82310 4.84760 4.94371 4.98412 5.01377 5.09009 5.18080 5.21521 5.23997 5.26079 5.28945 5.43204 5.50570 5.83835 6.04024 6.16501 6.42141 6.63368 7.03114 7.15740 7.59414 8.15826 8.72413 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024575 B = 0.002159 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.078413 B =12963.010407 C =13580.825695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.525 5.525 3 C 0.060 3.940 4 C 0.442 3.558 5 O -0.616 6.616 6 N -0.574 5.574 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.012 4.012 10 N -0.920 5.920 11 Si 0.990 3.010 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.275 1.275 15 C 0.076 3.924 16 H 0.070 0.930 17 C -0.125 4.125 18 C 0.106 3.894 19 N -0.610 5.610 20 C 0.564 3.436 21 O -0.590 6.590 22 C -0.185 4.185 23 C -0.121 4.121 24 C -0.128 4.128 25 H 0.117 0.883 26 C -0.091 4.091 27 C -0.122 4.122 28 C -0.077 4.077 29 C 0.118 3.882 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.397 0.603 36 H 0.277 0.723 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.427 -17.156 17.898 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.249 5.249 3 C -0.071 4.071 4 C 0.229 3.771 5 O -0.502 6.502 6 N -0.211 5.211 7 C -0.459 4.459 8 H 0.095 0.905 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.814 3.186 12 H -0.198 1.198 13 H -0.195 1.195 14 H -0.199 1.199 15 C -0.033 4.033 16 H 0.088 0.912 17 C -0.163 4.163 18 C -0.015 4.015 19 N -0.342 5.342 20 C 0.354 3.646 21 O -0.471 6.471 22 C -0.188 4.188 23 C -0.159 4.159 24 C -0.146 4.146 25 H 0.135 0.865 26 C -0.128 4.128 27 C -0.159 4.159 28 C -0.115 4.115 29 C -0.005 4.005 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.231 0.769 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.080 0.920 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.711 -17.966 16.845 26.473 hybrid contribution -0.990 1.172 -0.217 1.550 sum 8.721 -16.794 16.628 25.191 Atomic orbital electron populations 1.22419 0.86923 1.02206 1.00667 1.61514 1.08619 1.12660 1.42134 1.21737 1.02569 0.88793 0.93997 1.20771 0.83688 0.82227 0.90421 1.90479 1.45174 1.65392 1.49118 1.41908 1.50084 1.11557 1.17595 1.19614 1.34248 0.96351 0.95734 0.90494 1.25976 0.96350 0.96651 1.02222 1.69658 1.38111 1.12630 1.35671 0.84976 0.78207 0.77824 0.77636 1.19798 1.19518 1.19944 1.22807 0.96497 0.91921 0.92106 0.91216 1.22819 0.93417 0.97940 1.02130 1.22356 0.86131 0.90899 1.02155 1.48466 1.15077 1.18572 1.52129 1.19738 0.87187 0.78992 0.78692 1.90670 1.31683 1.60749 1.63975 1.22284 0.97868 1.08175 0.90462 1.23182 1.00612 0.99668 0.92412 1.23636 0.95576 0.96950 0.98456 0.86535 1.22030 0.90885 1.03251 0.96624 1.22810 0.97201 0.99769 0.96128 1.21872 0.91083 0.99734 0.98808 1.22091 0.91751 0.90714 0.95946 0.94962 0.92136 0.91163 0.91312 0.86435 0.76943 0.91341 0.87240 0.90232 0.88714 0.89666 0.86255 0.89292 0.89183 0.89990 0.90526 0.89337 0.92587 0.89760 0.92001 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.01 127.69 1.15 1.99 16 2 N -0.52 -16.30 4.40 -892.99 -3.92 -20.23 16 3 C 0.06 1.94 5.32 85.55 0.46 2.40 16 4 C 0.44 20.40 7.47 87.66 0.66 21.06 16 5 O -0.62 -33.50 13.91 -3.08 -0.04 -33.54 16 6 N -0.57 -28.68 5.29 -306.99 -1.62 -30.30 16 7 C -0.33 -18.47 9.68 84.04 0.81 -17.65 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 9 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 10 N -0.92 -48.74 13.05 21.66 0.28 -48.46 16 11 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.08 1.74 2.72 46.38 0.13 1.87 16 16 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 17 C -0.13 -2.19 5.31 31.78 0.17 -2.02 16 18 C 0.11 1.60 5.87 86.73 0.51 2.11 16 19 N -0.61 -13.69 3.32 -811.35 -2.70 -16.39 16 20 C 0.56 14.49 7.24 87.66 0.63 15.13 16 21 O -0.59 -20.79 17.39 -3.02 -0.05 -20.85 16 22 C -0.18 -3.17 1.98 -52.20 -0.10 -3.28 16 23 C -0.12 -1.73 9.87 30.59 0.30 -1.43 16 24 C -0.13 -1.43 5.55 -10.07 -0.06 -1.49 16 25 H 0.12 1.26 7.54 -2.39 -0.02 1.24 16 26 C -0.09 -0.60 6.62 31.67 0.21 -0.39 16 27 C -0.12 -0.96 6.77 31.88 0.22 -0.74 16 28 C -0.08 -1.02 6.43 31.67 0.20 -0.82 16 29 C 0.12 3.06 5.37 86.93 0.47 3.53 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 2.45 5.83 -2.38 -0.01 2.44 16 32 H 0.07 2.11 7.15 -2.39 -0.02 2.09 16 33 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 34 H 0.12 3.18 6.73 -2.38 -0.02 3.16 16 35 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 36 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.11 1.40 7.88 -2.39 -0.02 1.39 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.09 1.01 6.54 -2.39 -0.02 1.00 16 40 H 0.09 1.11 6.34 -2.39 -0.02 1.10 16 41 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 0.59 5.99 -2.39 -0.01 0.57 16 46 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.06 0.91 8.00 -2.39 -0.02 0.89 16 48 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 Total: -1.00 -73.91 391.80 0.41 -73.50 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.22 Total: 31.53 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.22 Total: 20.08 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -7.96 Total: -115.37 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.10 Total: -54.39 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.91 0.41 -73.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191442840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.786 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds