Wall clock time and date at job start Tue Mar 31 2020 18:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99726 * 2 1 4 4 C 1.50706 * 109.46905 * 66.05127 * 3 2 1 5 5 O 1.21294 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00001 * 179.97438 * 4 3 2 7 7 C 1.37097 * 120.00187 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99790 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31414 * 119.99954 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99829 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47086 * 89.99919 * 11 9 7 13 13 H 1.48504 * 109.47165 * 209.99468 * 11 9 7 14 14 H 1.48493 * 109.47230 * 329.99499 * 11 9 7 15 15 C 1.46898 * 110.99489 * 236.05143 * 2 1 3 16 16 H 1.09000 * 110.89086 * 64.36638 * 15 2 1 17 17 C 1.55151 * 111.00704 * 300.43473 * 15 2 1 18 18 C 1.54312 * 102.86448 * 206.23300 * 17 15 2 19 19 N 1.47017 * 107.27686 * 22.52706 * 18 17 15 20 20 C 1.34774 * 125.65012 * 180.96778 * 19 18 17 21 21 O 1.21284 * 120.00366 * 179.69271 * 20 19 18 22 22 C 1.50700 * 119.99864 * 359.41515 * 20 19 18 23 23 H 1.08995 * 110.67556 * 303.50937 * 22 20 19 24 24 C 1.54888 * 110.75899 * 66.94841 * 22 20 19 25 25 C 1.54257 * 104.20139 * 156.25357 * 24 22 20 26 26 H 1.09006 * 117.76258 * 116.74817 * 25 24 22 27 27 C 1.52993 * 118.20277 * 272.21485 * 25 24 22 28 28 C 1.52992 * 60.38396 * 93.61506 * 27 25 24 29 29 H 1.09001 * 119.76163 * 111.12094 * 28 27 25 30 30 C 1.54272 * 118.20005 * 266.38996 * 28 27 25 31 31 C 1.47430 * 108.70370 * 0.70635 * 19 18 17 32 32 H 1.08999 * 109.46962 * 189.73483 * 1 2 3 33 33 H 1.09003 * 109.46795 * 309.72719 * 1 2 3 34 34 H 1.09001 * 109.47400 * 69.73256 * 1 2 3 35 35 H 1.08995 * 109.47342 * 186.04675 * 3 2 1 36 36 H 1.08999 * 109.47464 * 306.05347 * 3 2 1 37 37 H 0.97004 * 120.00018 * 0.02562 * 6 4 3 38 38 H 0.97007 * 119.99497 * 180.02562 * 10 9 7 39 39 H 1.09002 * 110.72247 * 324.79624 * 17 15 2 40 40 H 1.09005 * 110.72086 * 87.88756 * 17 15 2 41 41 H 1.09002 * 109.98900 * 263.04582 * 18 17 15 42 42 H 1.09011 * 109.76995 * 141.88704 * 18 17 15 43 43 H 1.09000 * 110.48727 * 274.93876 * 24 22 20 44 44 H 1.09004 * 110.48194 * 37.57402 * 24 22 20 45 45 H 1.09006 * 117.46170 * 346.01553 * 27 25 24 46 46 H 1.09006 * 117.46441 * 201.21429 * 27 25 24 47 47 H 1.08995 * 110.48050 * 329.10569 * 30 28 27 48 48 H 1.08997 * 110.59653 * 206.51624 * 30 28 27 49 49 H 1.08996 * 110.36561 * 94.93612 * 31 19 18 50 50 H 1.08997 * 110.36135 * 217.26392 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2986 5 8 1.0047 1.4454 2.1409 6 7 2.0188 3.3197 1.5239 7 6 1.6923 3.9346 2.7050 8 1 1.1293 3.3988 3.4550 9 6 2.0865 5.2465 2.9375 10 7 1.7730 5.8359 4.0694 11 14 3.0607 6.1728 1.6405 12 1 2.1249 6.8778 0.7281 13 1 3.9479 7.1635 2.3015 14 1 3.8839 5.2138 0.8609 15 6 1.9954 -0.7659 -1.1377 16 1 1.7233 -0.2951 -2.0824 17 6 1.5097 -2.2386 -1.0891 18 6 2.6175 -2.9912 -1.8556 19 7 3.8285 -2.1594 -1.8010 20 6 5.0132 -2.4585 -2.3697 21 8 5.9472 -1.6920 -2.2645 22 6 5.1792 -3.7484 -3.1311 23 1 4.9305 -4.6021 -2.5008 24 6 4.3169 -3.7413 -4.4177 25 6 5.0157 -4.7548 -5.3472 26 1 4.4592 -5.6466 -5.6358 27 6 6.1414 -4.2495 -6.2517 28 6 6.4799 -4.8411 -4.8820 29 1 6.9992 -5.7974 -4.8189 30 6 6.6197 -3.8769 -3.6858 31 6 3.5306 -0.9409 -1.0264 32 1 -0.3633 -1.0129 0.1738 33 1 -0.3633 0.6568 0.7904 34 1 -0.3634 0.3560 -0.9640 35 1 3.0797 1.3445 -0.1082 36 1 1.5610 1.9274 -0.8308 37 1 2.5241 3.8010 0.8501 38 1 2.0479 6.7520 4.2315 39 1 1.4422 -2.5887 -0.0590 40 1 0.5498 -2.3450 -1.5947 41 1 2.3172 -3.1412 -2.8926 42 1 2.8068 -3.9534 -1.3794 43 1 3.2996 -4.0644 -4.1970 44 1 4.3134 -2.7491 -4.8691 45 1 6.2435 -3.1710 -6.3726 46 1 6.3858 -4.8457 -7.1310 47 1 6.9881 -2.9067 -4.0191 48 1 7.2834 -4.2971 -2.9302 49 1 3.8229 -1.0726 0.0153 50 1 4.0427 -0.0816 -1.4594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191878339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:26 Heat of formation + Delta-G solvation = -24.319759 kcal Electronic energy + Delta-G solvation = -29191.402825 eV Core-core repulsion = 25219.727602 eV Total energy + Delta-G solvation = -3971.675223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88417 -39.52482 -38.62316 -37.66109 -35.58248 -33.88806 -32.48258 -31.68077 -30.92528 -29.19772 -28.53898 -28.05077 -25.23864 -24.73531 -23.24442 -22.71547 -21.13943 -20.38717 -20.11590 -19.40908 -19.15272 -18.22861 -17.41967 -16.79737 -16.69635 -15.89780 -15.82238 -15.09100 -14.93587 -14.59566 -14.44833 -14.19443 -13.82348 -13.69124 -13.57676 -13.46074 -13.13169 -13.05924 -12.93995 -12.60300 -12.41838 -12.11678 -11.96957 -11.87337 -11.69133 -11.59107 -11.48647 -11.43195 -11.37463 -11.12849 -11.03481 -10.86472 -10.58234 -10.47365 -10.19866 -9.97072 -9.85181 -9.53231 -8.84623 -8.59916 -8.18300 -8.04482 -6.30712 -3.82044 2.39941 2.66653 3.04661 3.07935 3.16477 3.19563 3.73035 3.81320 3.93605 4.11176 4.20963 4.24382 4.37252 4.42401 4.63915 4.70852 4.73618 4.77813 4.82343 4.94676 5.02826 5.06547 5.10633 5.15629 5.21443 5.25478 5.30904 5.38336 5.45437 5.50861 5.56146 5.59888 5.67321 5.71066 5.76107 5.78191 5.80189 5.82216 5.83410 5.90915 5.95468 6.00307 6.08621 6.42939 7.06938 7.20954 7.30843 7.58553 7.95489 8.14631 8.60320 8.95457 9.42836 9.83209 10.82263 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002275 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.573830 B =12306.085408 C =13302.177889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.507 5.507 3 C 0.039 3.961 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.590 5.590 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.123 4.123 18 C 0.100 3.900 19 N -0.616 5.616 20 C 0.535 3.465 21 O -0.537 6.537 22 C -0.108 4.108 23 H 0.103 0.897 24 C -0.084 4.084 25 C -0.168 4.168 26 H 0.113 0.887 27 C -0.152 4.152 28 C -0.165 4.165 29 H 0.112 0.888 30 C -0.078 4.078 31 C 0.111 3.889 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.015 0.985 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -21.775 -21.659 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.230 5.230 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.162 4.162 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.161 4.161 18 C -0.023 4.023 19 N -0.351 5.351 20 C 0.324 3.676 21 O -0.414 6.414 22 C -0.129 4.129 23 H 0.121 0.879 24 C -0.122 4.122 25 C -0.186 4.186 26 H 0.131 0.869 27 C -0.189 4.189 28 C -0.183 4.183 29 H 0.130 0.870 30 C -0.116 4.116 31 C -0.011 4.011 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.034 0.966 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.475 -21.821 -20.460 30.246 hybrid contribution 0.465 1.235 -1.629 2.096 sum 4.939 -20.586 -22.089 30.596 Atomic orbital electron populations 1.22531 0.85986 1.03096 1.00780 1.61591 1.09026 1.12576 1.39918 1.21955 1.00953 0.89184 0.97154 1.19572 0.85202 0.82425 0.88910 1.90533 1.42718 1.64064 1.46772 1.42217 1.50806 1.11998 1.17959 1.19418 1.33659 0.96207 0.93978 0.86239 1.25038 0.97847 0.96539 0.96736 1.69624 1.45728 1.13553 1.23184 0.86688 0.80524 0.80588 0.81720 1.19673 1.20144 1.19409 1.22795 0.93995 0.94417 0.92864 0.92699 1.22703 0.97394 0.93875 1.02158 1.22154 0.84681 0.94755 1.00706 1.48420 1.10986 1.22294 1.53374 1.20168 0.80915 0.87913 0.78637 1.90724 1.38949 1.51239 1.60468 1.22456 0.97874 0.95644 0.96961 0.87878 1.21929 0.98358 0.99217 0.92710 1.23198 0.90968 1.01526 1.02905 0.86917 1.23080 1.01029 1.01401 0.93384 1.23257 0.99185 1.01266 0.94627 0.86998 1.21803 0.94379 0.99780 0.95608 1.22275 0.94530 0.87303 0.97025 0.91689 0.88497 0.96620 0.89211 0.93199 0.79714 0.91620 0.88931 0.89986 0.91093 0.91063 0.90283 0.90929 0.88851 0.88300 0.89923 0.90650 0.89784 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.90 60.07 0.53 0.88 16 2 N -0.51 -7.62 4.40 -233.74 -1.03 -8.65 16 3 C 0.04 0.65 5.34 -4.97 -0.03 0.62 16 4 C 0.45 10.15 7.42 -10.98 -0.08 10.07 16 5 O -0.56 -14.57 13.96 5.55 0.08 -14.49 16 6 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 7 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 8 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 10 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 11 Si 0.88 19.55 27.74 -169.99 -4.71 14.83 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 15 C 0.07 0.79 2.69 -65.57 -0.18 0.61 16 16 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.12 -1.07 5.33 -24.91 -0.13 -1.20 16 18 C 0.10 0.76 6.17 -3.07 -0.02 0.74 16 19 N -0.62 -6.63 3.33 -170.52 -0.57 -7.20 16 20 C 0.54 6.34 7.19 -10.99 -0.08 6.26 16 21 O -0.54 -8.57 15.98 5.55 0.09 -8.48 16 22 C -0.11 -0.89 2.68 -89.78 -0.24 -1.13 16 23 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.08 -0.57 5.38 -25.08 -0.13 -0.70 16 25 C -0.17 -1.03 6.94 -89.51 -0.62 -1.65 16 26 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 27 C -0.15 -0.96 10.07 -26.74 -0.27 -1.23 16 28 C -0.17 -1.11 6.94 -89.50 -0.62 -1.73 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 C -0.08 -0.67 5.70 -25.07 -0.14 -0.81 16 31 C 0.11 1.39 5.45 -2.52 -0.01 1.38 16 32 H 0.06 0.81 7.37 -51.93 -0.38 0.42 16 33 H 0.10 1.77 5.78 -51.93 -0.30 1.47 16 34 H 0.02 0.20 8.12 -51.93 -0.42 -0.23 16 35 H 0.09 1.37 6.79 -51.93 -0.35 1.02 16 36 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 38 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.41 6.12 -51.93 -0.32 0.09 16 42 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.08 0.41 6.41 -51.93 -0.33 0.08 16 44 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.87 7.44 -51.93 -0.39 0.48 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.08 1.03 7.68 -51.93 -0.40 0.63 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -33.96 389.96 -9.99 -43.96 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.17 Total: 8.85 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.27 Total: 4.41 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.88 Total: -54.95 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.17 Total: -22.97 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.96 -9.99 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191878339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -33.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds