Wall clock time and date at job start Tue Mar 31 2020 18:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99726 * 2 1 4 4 C 1.50706 * 109.46905 * 66.05127 * 3 2 1 5 5 O 1.21294 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00001 * 179.97438 * 4 3 2 7 7 C 1.37097 * 120.00187 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99790 * 0.02562 * 7 6 4 9 9 C 1.38948 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31414 * 119.99954 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99829 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.47086 * 89.99919 * 11 9 7 13 13 H 1.48504 * 109.47165 * 209.99468 * 11 9 7 14 14 H 1.48493 * 109.47230 * 329.99499 * 11 9 7 15 15 C 1.46898 * 110.99489 * 236.05143 * 2 1 3 16 16 H 1.09000 * 110.89086 * 64.36638 * 15 2 1 17 17 C 1.55151 * 111.00704 * 300.43473 * 15 2 1 18 18 C 1.54312 * 102.86448 * 206.23300 * 17 15 2 19 19 N 1.47017 * 107.27686 * 22.52706 * 18 17 15 20 20 C 1.34774 * 125.65012 * 180.96778 * 19 18 17 21 21 O 1.21284 * 120.00366 * 179.69271 * 20 19 18 22 22 C 1.50700 * 119.99864 * 359.41515 * 20 19 18 23 23 H 1.08995 * 110.67556 * 303.50937 * 22 20 19 24 24 C 1.54888 * 110.75899 * 66.94841 * 22 20 19 25 25 C 1.54257 * 104.20139 * 156.25357 * 24 22 20 26 26 H 1.09006 * 117.76258 * 116.74817 * 25 24 22 27 27 C 1.52993 * 118.20277 * 272.21485 * 25 24 22 28 28 C 1.52992 * 60.38396 * 93.61506 * 27 25 24 29 29 H 1.09001 * 119.76163 * 111.12094 * 28 27 25 30 30 C 1.54272 * 118.20005 * 266.38996 * 28 27 25 31 31 C 1.47430 * 108.70370 * 0.70635 * 19 18 17 32 32 H 1.08999 * 109.46962 * 189.73483 * 1 2 3 33 33 H 1.09003 * 109.46795 * 309.72719 * 1 2 3 34 34 H 1.09001 * 109.47400 * 69.73256 * 1 2 3 35 35 H 1.08995 * 109.47342 * 186.04675 * 3 2 1 36 36 H 1.08999 * 109.47464 * 306.05347 * 3 2 1 37 37 H 0.97004 * 120.00018 * 0.02562 * 6 4 3 38 38 H 0.97007 * 119.99497 * 180.02562 * 10 9 7 39 39 H 1.09002 * 110.72247 * 324.79624 * 17 15 2 40 40 H 1.09005 * 110.72086 * 87.88756 * 17 15 2 41 41 H 1.09002 * 109.98900 * 263.04582 * 18 17 15 42 42 H 1.09011 * 109.76995 * 141.88704 * 18 17 15 43 43 H 1.09000 * 110.48727 * 274.93876 * 24 22 20 44 44 H 1.09004 * 110.48194 * 37.57402 * 24 22 20 45 45 H 1.09006 * 117.46170 * 346.01553 * 27 25 24 46 46 H 1.09006 * 117.46441 * 201.21429 * 27 25 24 47 47 H 1.08995 * 110.48050 * 329.10569 * 30 28 27 48 48 H 1.08997 * 110.59653 * 206.51624 * 30 28 27 49 49 H 1.08996 * 110.36561 * 94.93612 * 31 19 18 50 50 H 1.08997 * 110.36135 * 217.26392 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2986 5 8 1.0047 1.4454 2.1409 6 7 2.0188 3.3197 1.5239 7 6 1.6923 3.9346 2.7050 8 1 1.1293 3.3988 3.4550 9 6 2.0865 5.2465 2.9375 10 7 1.7730 5.8359 4.0694 11 14 3.0607 6.1728 1.6405 12 1 2.1249 6.8778 0.7281 13 1 3.9479 7.1635 2.3015 14 1 3.8839 5.2138 0.8609 15 6 1.9954 -0.7659 -1.1377 16 1 1.7233 -0.2951 -2.0824 17 6 1.5097 -2.2386 -1.0891 18 6 2.6175 -2.9912 -1.8556 19 7 3.8285 -2.1594 -1.8010 20 6 5.0132 -2.4585 -2.3697 21 8 5.9472 -1.6920 -2.2645 22 6 5.1792 -3.7484 -3.1311 23 1 4.9305 -4.6021 -2.5008 24 6 4.3169 -3.7413 -4.4177 25 6 5.0157 -4.7548 -5.3472 26 1 4.4592 -5.6466 -5.6358 27 6 6.1414 -4.2495 -6.2517 28 6 6.4799 -4.8411 -4.8820 29 1 6.9992 -5.7974 -4.8189 30 6 6.6197 -3.8769 -3.6858 31 6 3.5306 -0.9409 -1.0264 32 1 -0.3633 -1.0129 0.1738 33 1 -0.3633 0.6568 0.7904 34 1 -0.3634 0.3560 -0.9640 35 1 3.0797 1.3445 -0.1082 36 1 1.5610 1.9274 -0.8308 37 1 2.5241 3.8010 0.8501 38 1 2.0479 6.7520 4.2315 39 1 1.4422 -2.5887 -0.0590 40 1 0.5498 -2.3450 -1.5947 41 1 2.3172 -3.1412 -2.8926 42 1 2.8068 -3.9534 -1.3794 43 1 3.2996 -4.0644 -4.1970 44 1 4.3134 -2.7491 -4.8691 45 1 6.2435 -3.1710 -6.3726 46 1 6.3858 -4.8457 -7.1310 47 1 6.9881 -2.9067 -4.0191 48 1 7.2834 -4.2971 -2.9302 49 1 3.8229 -1.0726 0.0153 50 1 4.0427 -0.0816 -1.4594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191878339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:25 Heat of formation + Delta-G solvation = -48.734918 kcal Electronic energy + Delta-G solvation = -29192.461546 eV Core-core repulsion = 25219.727602 eV Total energy + Delta-G solvation = -3972.733944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.66782 -40.65094 -39.83729 -38.77003 -36.78955 -35.83661 -33.76345 -33.17736 -31.78547 -30.04754 -29.45629 -29.13661 -26.69122 -25.91569 -24.39437 -23.45106 -21.69749 -21.42542 -21.16702 -20.66977 -20.23435 -19.90126 -18.32042 -17.75539 -17.54797 -17.16838 -16.81173 -16.69120 -16.22554 -15.89706 -15.57543 -15.42936 -14.92525 -14.71122 -14.52792 -14.35035 -14.26087 -14.16481 -14.08291 -13.80836 -13.71004 -13.37069 -13.17135 -12.83814 -12.64396 -12.54897 -12.44924 -12.38293 -12.26120 -12.12643 -12.03836 -12.00162 -11.86432 -11.77006 -11.47450 -10.97965 -10.90776 -10.53508 -10.38188 -10.23806 -9.70824 -9.27060 -8.42366 -6.02456 1.29029 1.32664 1.41808 1.53044 1.82515 1.94316 2.20901 2.60383 2.69011 3.13632 3.19730 3.24160 3.51963 3.66945 3.70319 3.82263 4.02235 4.04236 4.08867 4.19974 4.22765 4.26929 4.29550 4.33636 4.40814 4.43417 4.49762 4.55842 4.59390 4.62656 4.71730 4.74102 4.77357 4.88732 4.92698 4.99543 5.04639 5.11847 5.14178 5.17463 5.22860 5.30062 5.33731 5.44010 5.52013 5.86290 5.97605 6.17052 6.47282 6.58539 6.87513 7.07589 7.38819 7.95375 8.75075 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.002275 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.573830 B =12306.085408 C =13302.177889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.528 5.528 3 C 0.051 3.949 4 C 0.454 3.546 5 O -0.601 6.601 6 N -0.594 5.594 7 C -0.324 4.324 8 H 0.058 0.942 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.237 1.237 15 C 0.075 3.925 16 H 0.072 0.928 17 C -0.117 4.117 18 C 0.099 3.901 19 N -0.614 5.614 20 C 0.529 3.471 21 O -0.590 6.590 22 C -0.101 4.101 23 H 0.125 0.875 24 C -0.081 4.081 25 C -0.157 4.157 26 H 0.134 0.866 27 C -0.158 4.158 28 C -0.170 4.170 29 H 0.125 0.875 30 C -0.082 4.082 31 C 0.110 3.890 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.388 0.612 38 H 0.279 0.721 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -23.809 -25.751 35.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.253 5.253 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.485 6.485 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.076 0.924 9 C -0.213 4.213 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.160 1.160 15 C -0.034 4.034 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.023 4.023 19 N -0.347 5.347 20 C 0.319 3.681 21 O -0.470 6.470 22 C -0.121 4.121 23 H 0.143 0.857 24 C -0.119 4.119 25 C -0.175 4.175 26 H 0.152 0.848 27 C -0.195 4.195 28 C -0.188 4.188 29 H 0.143 0.857 30 C -0.120 4.120 31 C -0.014 4.014 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.223 0.777 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.133 0.867 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.400 -23.903 -24.576 34.565 hybrid contribution 0.421 1.774 -0.251 1.841 sum 4.821 -22.129 -24.827 33.605 Atomic orbital electron populations 1.22408 0.85666 1.03394 1.00333 1.61509 1.09490 1.11805 1.42514 1.21829 1.02113 0.90158 0.93891 1.20768 0.82999 0.81719 0.90395 1.90519 1.44031 1.64981 1.48920 1.42071 1.51737 1.12734 1.17047 1.18993 1.34569 0.96917 0.94893 0.92366 1.26064 0.98683 0.97037 0.99547 1.69800 1.47285 1.14319 1.25972 0.85416 0.78967 0.79085 0.78404 1.17945 1.20017 1.16017 1.22811 0.92878 0.95765 0.91971 0.90995 1.22728 0.99059 0.91533 1.02155 1.22413 0.82673 0.94663 1.02515 1.48509 1.11828 1.22049 1.52359 1.20871 0.80389 0.88559 0.78282 1.90697 1.40766 1.53103 1.62469 1.22493 0.97992 0.94096 0.97563 0.85680 1.21947 0.99417 0.98852 0.91684 1.23300 0.90450 1.01765 1.02006 0.84795 1.23151 1.01537 1.00971 0.93826 1.23231 1.00373 1.01232 0.94006 0.85710 1.21780 0.94776 0.98901 0.96567 1.22129 0.95458 0.87926 0.95848 0.89647 0.93007 0.94212 0.87666 0.90237 0.77728 0.91176 0.90169 0.87234 0.88216 0.89109 0.87699 0.92396 0.90166 0.86729 0.92722 0.91002 0.92229 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.90 127.69 1.14 1.94 16 2 N -0.53 -15.08 4.40 -893.42 -3.93 -19.01 16 3 C 0.05 1.63 5.34 85.56 0.46 2.08 16 4 C 0.45 20.67 7.42 87.66 0.65 21.32 16 5 O -0.60 -32.85 13.96 -3.07 -0.04 -32.89 16 6 N -0.59 -28.59 5.09 -306.98 -1.56 -30.15 16 7 C -0.32 -19.20 10.16 84.04 0.85 -18.35 16 8 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 9 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 10 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 11 Si 0.96 39.89 27.74 68.60 1.90 41.79 16 12 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 13 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 14 H -0.24 -8.51 6.52 99.48 0.65 -7.86 16 15 C 0.07 1.51 2.69 46.31 0.12 1.63 16 16 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 17 C -0.12 -1.59 5.33 31.78 0.17 -1.42 16 18 C 0.10 1.09 6.17 86.73 0.53 1.62 16 19 N -0.61 -12.01 3.33 -811.80 -2.70 -14.71 16 20 C 0.53 12.04 7.19 87.66 0.63 12.67 16 21 O -0.59 -19.31 15.98 -3.04 -0.05 -19.36 16 22 C -0.10 -1.45 2.68 -10.25 -0.03 -1.48 16 23 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 24 C -0.08 -0.83 5.38 31.67 0.17 -0.66 16 25 C -0.16 -1.40 6.94 -10.07 -0.07 -1.47 16 26 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 27 C -0.16 -1.68 10.07 30.59 0.31 -1.37 16 28 C -0.17 -1.95 6.94 -10.07 -0.07 -2.02 16 29 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 30 C -0.08 -1.36 5.70 31.67 0.18 -1.18 16 31 C 0.11 2.63 5.45 86.86 0.47 3.11 16 32 H 0.08 1.94 7.37 -2.39 -0.02 1.92 16 33 H 0.05 1.91 5.78 -2.39 -0.01 1.90 16 34 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 35 H 0.11 3.04 6.79 -2.39 -0.02 3.03 16 36 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 37 H 0.39 15.74 5.76 -92.71 -0.53 15.20 16 38 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 0.59 6.12 -2.39 -0.01 0.58 16 42 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.10 0.53 6.41 -2.39 -0.02 0.51 16 44 H 0.06 0.79 8.04 -2.38 -0.02 0.77 16 45 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.05 1.20 7.44 -2.39 -0.02 1.19 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.06 1.67 7.68 -2.39 -0.02 1.65 16 Total: -1.00 -82.35 389.96 0.26 -82.09 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.35 Total: 32.69 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.99 Total: 16.07 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -7.89 Total: -120.39 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -82.35 0.26 -82.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191878339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.357 kcal (2) G-P(sol) polarization free energy of solvation -82.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds