Wall clock time and date at job start Tue Mar 31 2020 18:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 110.99986 * 2 1 4 4 C 1.50700 * 109.47227 * 66.04368 * 3 2 1 5 5 O 1.21290 * 120.00281 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.37101 * 120.00075 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99532 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00047 * 180.02562 * 7 6 4 10 10 N 1.31417 * 119.99951 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00062 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47020 * 90.00529 * 11 9 7 13 13 H 1.48500 * 109.47126 * 210.00420 * 11 9 7 14 14 H 1.48499 * 109.46995 * 330.00211 * 11 9 7 15 15 C 1.46899 * 111.00159 * 236.04376 * 2 1 3 16 16 H 1.09002 * 110.88589 * 64.44111 * 15 2 1 17 17 C 1.55151 * 111.03948 * 300.53878 * 15 2 1 18 18 C 1.54309 * 102.86411 * 206.21446 * 17 15 2 19 19 N 1.47022 * 107.27735 * 22.52527 * 18 17 15 20 20 C 1.34771 * 125.64756 * 180.97294 * 19 18 17 21 21 O 1.21290 * 119.99965 * 179.68963 * 20 19 18 22 22 C 1.50703 * 120.00145 * 359.68522 * 20 19 18 23 23 C 1.53895 * 113.58776 * 180.02562 * 22 20 19 24 24 C 1.53257 * 86.88361 * 139.57314 * 23 22 20 25 25 C 1.52456 * 128.58741 * 194.88484 * 24 23 22 26 26 C 1.52456 * 128.58356 * 114.93782 * 24 23 22 27 27 C 1.53261 * 87.69042 * 334.91866 * 24 23 22 28 28 C 1.47429 * 108.70102 * 0.70274 * 19 18 17 29 29 H 1.08999 * 109.47339 * 189.74343 * 1 2 3 30 30 H 1.09002 * 109.47391 * 309.74075 * 1 2 3 31 31 H 1.08999 * 109.47439 * 69.73594 * 1 2 3 32 32 H 1.08997 * 109.47241 * 186.04815 * 3 2 1 33 33 H 1.09001 * 109.46808 * 306.04723 * 3 2 1 34 34 H 0.97003 * 119.99788 * 0.02562 * 6 4 3 35 35 H 0.96995 * 119.99776 * 179.97438 * 10 9 7 36 36 H 1.09012 * 110.71832 * 324.77001 * 17 15 2 37 37 H 1.08994 * 110.72420 * 87.86401 * 17 15 2 38 38 H 1.08997 * 109.98953 * 263.04327 * 18 17 15 39 39 H 1.09004 * 109.77383 * 141.88339 * 18 17 15 40 40 H 1.08996 * 112.88313 * 48.84122 * 22 20 19 41 41 H 1.09000 * 113.64198 * 254.07244 * 23 22 20 42 42 H 1.08999 * 113.64735 * 25.07483 * 23 22 20 43 43 H 1.09001 * 117.50971 * 349.85526 * 25 24 23 44 44 H 1.09002 * 117.51339 * 134.95056 * 25 24 23 45 45 H 1.09003 * 117.51852 * 225.05078 * 26 24 23 46 46 H 1.09004 * 117.51544 * 10.11937 * 26 24 23 47 47 H 1.09002 * 113.64210 * 270.58414 * 27 24 23 48 48 H 1.09000 * 113.64464 * 139.58423 * 27 24 23 49 49 H 1.08998 * 110.36260 * 94.94005 * 28 19 18 50 50 H 1.09002 * 110.36238 * 217.15237 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0053 1.4454 2.1411 6 7 2.0188 3.3199 1.5237 7 6 1.6931 3.9345 2.7051 8 1 1.1300 3.3988 3.4551 9 6 2.0864 5.2468 2.9371 10 7 1.7737 5.8360 4.0694 11 14 3.0596 6.1734 1.6395 12 1 2.1230 6.8776 0.7273 13 1 3.9464 7.1647 2.3000 14 1 3.8831 5.2146 0.8599 15 6 1.9954 -0.7660 -1.1375 16 1 1.7245 -0.2945 -2.0822 17 6 1.5081 -2.2383 -1.0910 18 6 2.6159 -2.9912 -1.8572 19 7 3.8277 -2.1607 -1.8007 20 6 5.0125 -2.4604 -2.3688 21 8 5.9472 -1.6949 -2.2620 22 6 5.1761 -3.7468 -3.1368 23 6 6.5864 -3.9398 -3.7216 24 6 6.4639 -5.4116 -3.3120 25 6 7.5620 -6.4638 -3.2066 26 6 6.4156 -6.6462 -4.2051 27 6 5.4609 -4.9660 -2.2422 28 6 3.5303 -0.9426 -1.0252 29 1 -0.3634 -1.0128 0.1739 30 1 -0.3634 0.6570 0.7902 31 1 -0.3634 0.3559 -0.9640 32 1 3.0796 1.3444 -0.1083 33 1 1.5610 1.9273 -0.8309 34 1 2.5242 3.8010 0.8498 35 1 2.0486 6.7520 4.2314 36 1 1.4395 -2.5894 -0.0612 37 1 0.5487 -2.3432 -1.5974 38 1 2.3163 -3.1397 -2.8947 39 1 2.8039 -3.9540 -1.3820 40 1 4.3774 -3.9134 -3.8595 41 1 6.6369 -3.7888 -4.7999 42 1 7.3621 -3.3985 -3.1800 43 1 8.5432 -6.2094 -3.6073 44 1 7.5656 -7.1010 -2.3222 45 1 5.6653 -7.4034 -3.9776 46 1 6.6422 -6.5117 -5.2629 47 1 5.9234 -4.7103 -1.2889 48 1 4.6093 -5.6378 -2.1345 49 1 3.8216 -1.0758 0.0166 50 1 4.0452 -0.0838 -1.4557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192284130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:24 Heat of formation + Delta-G solvation = 1.004536 kcal Electronic energy + Delta-G solvation = -28907.402689 eV Core-core repulsion = 24936.825610 eV Total energy + Delta-G solvation = -3970.577080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88856 -39.53904 -38.58378 -37.61116 -35.55429 -33.99639 -33.85437 -31.68040 -31.04996 -29.25145 -28.04475 -26.16805 -25.64288 -24.79746 -23.28726 -22.90139 -22.63307 -20.31921 -19.45146 -19.20393 -18.72852 -18.23412 -17.53979 -16.86974 -16.00403 -15.84591 -15.60937 -15.46441 -15.13403 -14.94402 -14.56248 -14.35345 -13.98346 -13.68344 -13.47390 -13.15982 -13.10524 -12.88662 -12.77561 -12.57541 -12.42870 -12.31822 -12.09107 -11.90269 -11.87176 -11.83782 -11.49057 -11.37557 -11.14434 -11.04475 -10.87756 -10.73285 -10.70130 -10.58008 -10.12010 -9.96848 -9.81561 -9.52973 -8.83344 -8.59512 -8.17993 -8.03968 -6.30469 -3.81810 2.41609 2.69438 3.04873 3.08161 3.16664 3.33118 3.73375 3.84943 3.92469 4.05679 4.11414 4.23017 4.25481 4.40717 4.43496 4.49658 4.71993 4.77043 4.82860 4.93948 5.06554 5.13142 5.21652 5.22590 5.23891 5.30212 5.35266 5.41198 5.44651 5.46203 5.55960 5.59776 5.60964 5.70482 5.72075 5.78654 5.81017 5.83002 5.84315 5.90519 5.93523 6.00939 6.10039 6.43303 7.07594 7.21799 7.33032 7.58854 7.98349 8.14893 8.60607 8.95704 9.43102 9.83502 10.82531 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002166 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.973294 B =12924.101860 C =13877.806199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.507 5.507 3 C 0.039 3.961 4 C 0.453 3.547 5 O -0.559 6.559 6 N -0.590 5.590 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.269 1.269 15 C 0.069 3.931 16 H 0.055 0.945 17 C -0.123 4.123 18 C 0.104 3.896 19 N -0.616 5.616 20 C 0.537 3.463 21 O -0.538 6.538 22 C -0.127 4.127 23 C -0.076 4.076 24 C -0.164 4.164 25 C -0.165 4.165 26 C -0.151 4.151 27 C -0.080 4.080 28 C 0.111 3.889 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -23.171 -19.933 30.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.231 5.231 3 C -0.092 4.092 4 C 0.239 3.761 5 O -0.441 6.441 6 N -0.230 5.230 7 C -0.433 4.433 8 H 0.138 0.862 9 C -0.161 4.161 10 N -0.521 5.521 11 Si 0.705 3.295 12 H -0.197 1.197 13 H -0.201 1.201 14 H -0.194 1.194 15 C -0.041 4.041 16 H 0.073 0.927 17 C -0.161 4.161 18 C -0.019 4.019 19 N -0.350 5.350 20 C 0.326 3.674 21 O -0.415 6.415 22 C -0.148 4.148 23 C -0.113 4.113 24 C -0.165 4.165 25 C -0.202 4.202 26 C -0.188 4.188 27 C -0.117 4.117 28 C -0.012 4.012 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.034 0.966 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.420 -23.212 -18.751 30.328 hybrid contribution 0.422 1.341 -1.694 2.202 sum 5.842 -21.870 -20.446 30.504 Atomic orbital electron populations 1.22527 0.85997 1.03091 1.00774 1.61582 1.09015 1.12572 1.39945 1.21954 1.00960 0.89182 0.97147 1.19573 0.85192 0.82424 0.88914 1.90531 1.42744 1.64060 1.46742 1.42220 1.50816 1.12016 1.17942 1.19419 1.33696 0.96193 0.93952 0.86239 1.25036 0.97845 0.96527 0.96738 1.69621 1.45746 1.13563 1.23172 0.86689 0.80523 0.80591 0.81727 1.19673 1.20146 1.19408 1.22791 0.94010 0.94421 0.92854 0.92711 1.22700 0.97400 0.93877 1.02149 1.22047 0.84586 0.94780 1.00515 1.48436 1.10923 1.22238 1.53450 1.20153 0.80852 0.87605 0.78794 1.90718 1.38947 1.51013 1.60795 1.22578 1.00388 0.92590 0.99237 1.22399 0.95508 0.92380 1.01054 1.22145 1.01524 0.91467 1.01314 1.22806 0.94093 1.01781 1.01486 1.22795 1.01375 0.97928 0.96673 1.22386 0.97933 0.94729 0.96685 1.22269 0.94510 0.87366 0.97021 0.91690 0.88506 0.96627 0.89202 0.93202 0.79715 0.91623 0.88941 0.90009 0.91416 0.91035 0.86982 0.90930 0.88175 0.88581 0.88606 0.88552 0.88552 0.89164 0.90565 0.89840 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.90 60.06 0.53 0.88 16 2 N -0.51 -7.65 4.40 -233.76 -1.03 -8.68 16 3 C 0.04 0.65 5.34 -4.98 -0.03 0.62 16 4 C 0.45 10.17 7.42 -10.99 -0.08 10.09 16 5 O -0.56 -14.58 13.97 5.55 0.08 -14.50 16 6 N -0.59 -14.07 5.09 -10.96 -0.06 -14.12 16 7 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 10 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 11 Si 0.88 19.57 27.74 -169.99 -4.71 14.85 16 12 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 15 C 0.07 0.80 2.69 -65.57 -0.18 0.62 16 16 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 17 C -0.12 -1.08 5.33 -24.91 -0.13 -1.21 16 18 C 0.10 0.80 6.44 -3.07 -0.02 0.78 16 19 N -0.62 -6.71 3.33 -170.53 -0.57 -7.27 16 20 C 0.54 6.41 7.37 -10.99 -0.08 6.33 16 21 O -0.54 -8.62 16.15 5.55 0.09 -8.53 16 22 C -0.13 -1.05 3.36 -90.85 -0.31 -1.36 16 23 C -0.08 -0.64 7.42 -26.13 -0.19 -0.84 16 24 C -0.16 -1.17 3.08 -154.80 -0.48 -1.64 16 25 C -0.16 -1.04 10.53 -26.95 -0.28 -1.32 16 26 C -0.15 -0.85 10.53 -26.95 -0.28 -1.13 16 27 C -0.08 -0.58 7.64 -26.14 -0.20 -0.78 16 28 C 0.11 1.40 5.46 -2.53 -0.01 1.38 16 29 H 0.06 0.81 7.37 -51.93 -0.38 0.43 16 30 H 0.10 1.77 5.79 -51.93 -0.30 1.47 16 31 H 0.02 0.20 8.12 -51.93 -0.42 -0.23 16 32 H 0.09 1.37 6.79 -51.93 -0.35 1.02 16 33 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 34 H 0.37 7.82 5.76 -40.82 -0.24 7.58 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 1.03 7.43 -51.93 -0.39 0.65 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -34.02 399.20 -9.77 -43.78 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.37 Total: 8.75 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.99 Total: 4.73 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.88 Total: -55.10 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.02 -9.77 -43.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192284130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.787 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds