Wall clock time and date at job start Tue Mar 31 2020 18:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 110.99986 * 2 1 4 4 C 1.50700 * 109.47227 * 66.04368 * 3 2 1 5 5 O 1.21290 * 120.00281 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99981 * 179.97438 * 4 3 2 7 7 C 1.37101 * 120.00075 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99532 * 359.97438 * 7 6 4 9 9 C 1.38946 * 120.00047 * 180.02562 * 7 6 4 10 10 N 1.31417 * 119.99951 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00062 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47020 * 90.00529 * 11 9 7 13 13 H 1.48500 * 109.47126 * 210.00420 * 11 9 7 14 14 H 1.48499 * 109.46995 * 330.00211 * 11 9 7 15 15 C 1.46899 * 111.00159 * 236.04376 * 2 1 3 16 16 H 1.09002 * 110.88589 * 64.44111 * 15 2 1 17 17 C 1.55151 * 111.03948 * 300.53878 * 15 2 1 18 18 C 1.54309 * 102.86411 * 206.21446 * 17 15 2 19 19 N 1.47022 * 107.27735 * 22.52527 * 18 17 15 20 20 C 1.34771 * 125.64756 * 180.97294 * 19 18 17 21 21 O 1.21290 * 119.99965 * 179.68963 * 20 19 18 22 22 C 1.50703 * 120.00145 * 359.68522 * 20 19 18 23 23 C 1.53895 * 113.58776 * 180.02562 * 22 20 19 24 24 C 1.53257 * 86.88361 * 139.57314 * 23 22 20 25 25 C 1.52456 * 128.58741 * 194.88484 * 24 23 22 26 26 C 1.52456 * 128.58356 * 114.93782 * 24 23 22 27 27 C 1.53261 * 87.69042 * 334.91866 * 24 23 22 28 28 C 1.47429 * 108.70102 * 0.70274 * 19 18 17 29 29 H 1.08999 * 109.47339 * 189.74343 * 1 2 3 30 30 H 1.09002 * 109.47391 * 309.74075 * 1 2 3 31 31 H 1.08999 * 109.47439 * 69.73594 * 1 2 3 32 32 H 1.08997 * 109.47241 * 186.04815 * 3 2 1 33 33 H 1.09001 * 109.46808 * 306.04723 * 3 2 1 34 34 H 0.97003 * 119.99788 * 0.02562 * 6 4 3 35 35 H 0.96995 * 119.99776 * 179.97438 * 10 9 7 36 36 H 1.09012 * 110.71832 * 324.77001 * 17 15 2 37 37 H 1.08994 * 110.72420 * 87.86401 * 17 15 2 38 38 H 1.08997 * 109.98953 * 263.04327 * 18 17 15 39 39 H 1.09004 * 109.77383 * 141.88339 * 18 17 15 40 40 H 1.08996 * 112.88313 * 48.84122 * 22 20 19 41 41 H 1.09000 * 113.64198 * 254.07244 * 23 22 20 42 42 H 1.08999 * 113.64735 * 25.07483 * 23 22 20 43 43 H 1.09001 * 117.50971 * 349.85526 * 25 24 23 44 44 H 1.09002 * 117.51339 * 134.95056 * 25 24 23 45 45 H 1.09003 * 117.51852 * 225.05078 * 26 24 23 46 46 H 1.09004 * 117.51544 * 10.11937 * 26 24 23 47 47 H 1.09002 * 113.64210 * 270.58414 * 27 24 23 48 48 H 1.09000 * 113.64464 * 139.58423 * 27 24 23 49 49 H 1.08998 * 110.36260 * 94.94005 * 28 19 18 50 50 H 1.09002 * 110.36238 * 217.15237 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0053 1.4454 2.1411 6 7 2.0188 3.3199 1.5237 7 6 1.6931 3.9345 2.7051 8 1 1.1300 3.3988 3.4551 9 6 2.0864 5.2468 2.9371 10 7 1.7737 5.8360 4.0694 11 14 3.0596 6.1734 1.6395 12 1 2.1230 6.8776 0.7273 13 1 3.9464 7.1647 2.3000 14 1 3.8831 5.2146 0.8599 15 6 1.9954 -0.7660 -1.1375 16 1 1.7245 -0.2945 -2.0822 17 6 1.5081 -2.2383 -1.0910 18 6 2.6159 -2.9912 -1.8572 19 7 3.8277 -2.1607 -1.8007 20 6 5.0125 -2.4604 -2.3688 21 8 5.9472 -1.6949 -2.2620 22 6 5.1761 -3.7468 -3.1368 23 6 6.5864 -3.9398 -3.7216 24 6 6.4639 -5.4116 -3.3120 25 6 7.5620 -6.4638 -3.2066 26 6 6.4156 -6.6462 -4.2051 27 6 5.4609 -4.9660 -2.2422 28 6 3.5303 -0.9426 -1.0252 29 1 -0.3634 -1.0128 0.1739 30 1 -0.3634 0.6570 0.7902 31 1 -0.3634 0.3559 -0.9640 32 1 3.0796 1.3444 -0.1083 33 1 1.5610 1.9273 -0.8309 34 1 2.5242 3.8010 0.8498 35 1 2.0486 6.7520 4.2314 36 1 1.4395 -2.5894 -0.0612 37 1 0.5487 -2.3432 -1.5974 38 1 2.3163 -3.1397 -2.8947 39 1 2.8039 -3.9540 -1.3820 40 1 4.3774 -3.9134 -3.8595 41 1 6.6369 -3.7888 -4.7999 42 1 7.3621 -3.3985 -3.1800 43 1 8.5432 -6.2094 -3.6073 44 1 7.5656 -7.1010 -2.3222 45 1 5.6653 -7.4034 -3.9776 46 1 6.6422 -6.5117 -5.2629 47 1 5.9234 -4.7103 -1.2889 48 1 4.6093 -5.6378 -2.1345 49 1 3.8216 -1.0758 0.0166 50 1 4.0452 -0.0838 -1.4557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192284130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:23 Heat of formation + Delta-G solvation = -23.210935 kcal Electronic energy + Delta-G solvation = -28908.452751 eV Core-core repulsion = 24936.825610 eV Total energy + Delta-G solvation = -3971.627141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66944 -40.67206 -39.84321 -38.69709 -36.76619 -35.83069 -34.54295 -33.76158 -31.97457 -30.15816 -29.44037 -26.83015 -26.70268 -26.28455 -24.46265 -23.56556 -23.21895 -21.41620 -21.14962 -20.27654 -19.95128 -19.30318 -18.39082 -17.90687 -17.49864 -16.82931 -16.59011 -16.45128 -16.15693 -16.01311 -15.83760 -15.59220 -15.33734 -14.87793 -14.59823 -14.43050 -14.25635 -14.14117 -13.92654 -13.55347 -13.47946 -13.28495 -13.16708 -12.99357 -12.82083 -12.62196 -12.47723 -12.43331 -12.34334 -12.30353 -12.00375 -11.87733 -11.83982 -11.47367 -11.32414 -11.25366 -10.77653 -10.51759 -10.38092 -10.23650 -9.70101 -9.26797 -8.42251 -6.02375 1.29124 1.32773 1.41898 1.54337 1.85131 1.94496 2.21019 2.60669 2.84566 3.13793 3.20048 3.32288 3.39834 3.57243 3.63769 3.69763 3.87222 3.92679 4.03599 4.09072 4.15451 4.26796 4.30007 4.34109 4.39780 4.42133 4.55978 4.62873 4.73985 4.74445 4.77639 4.80834 4.81924 4.83658 4.89591 5.00861 5.01753 5.04832 5.16291 5.18075 5.24944 5.28855 5.31155 5.38256 5.52145 5.86512 5.97784 6.17293 6.49702 6.58677 6.87607 7.10359 7.38913 7.95491 8.75208 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019161 B = 0.002166 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.973294 B =12924.101860 C =13877.806199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.528 5.528 3 C 0.051 3.949 4 C 0.453 3.547 5 O -0.601 6.601 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.058 0.942 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.961 3.039 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.237 1.237 15 C 0.075 3.925 16 H 0.072 0.928 17 C -0.117 4.117 18 C 0.103 3.897 19 N -0.615 5.615 20 C 0.530 3.470 21 O -0.591 6.591 22 C -0.117 4.117 23 C -0.083 4.083 24 C -0.173 4.173 25 C -0.175 4.175 26 C -0.133 4.133 27 C -0.075 4.075 28 C 0.110 3.890 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.142 0.858 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.058 0.942 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -25.124 -24.174 35.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.253 5.253 3 C -0.080 4.080 4 C 0.241 3.759 5 O -0.484 6.484 6 N -0.236 5.236 7 C -0.454 4.454 8 H 0.076 0.924 9 C -0.213 4.213 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.160 1.160 15 C -0.034 4.034 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.019 4.019 19 N -0.348 5.348 20 C 0.321 3.679 21 O -0.471 6.471 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.173 4.173 25 C -0.211 4.211 26 C -0.170 4.170 27 C -0.112 4.112 28 C -0.014 4.014 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.159 0.841 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.089 0.911 48 H 0.119 0.881 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.389 -25.216 -23.013 34.562 hybrid contribution 0.371 1.835 -0.271 1.892 sum 5.760 -23.381 -23.285 33.497 Atomic orbital electron populations 1.22403 0.85679 1.03378 1.00332 1.61499 1.09478 1.11817 1.42548 1.21828 1.02119 0.90142 0.93893 1.20769 0.82997 0.81722 0.90400 1.90517 1.44061 1.64979 1.48892 1.42071 1.51742 1.12745 1.17027 1.18995 1.34618 0.96909 0.94872 0.92371 1.26060 0.98667 0.97019 0.99550 1.69797 1.47293 1.14328 1.25960 0.85418 0.78975 0.79087 0.78410 1.17938 1.20015 1.16014 1.22806 0.92891 0.95755 0.91969 0.90981 1.22723 0.99062 0.91559 1.02125 1.22302 0.82556 0.94592 1.02437 1.48537 1.11790 1.21984 1.52449 1.20882 0.80290 0.88248 0.78507 1.90691 1.40722 1.52895 1.62815 1.22658 1.00964 0.90690 0.99420 1.22355 0.95083 0.93458 1.01204 1.22104 1.02215 0.91031 1.01926 1.22898 0.94314 1.01649 1.02283 1.22898 1.00707 0.96644 0.96737 1.22335 0.98709 0.94521 0.95685 1.22122 0.95437 0.88008 0.95821 0.89672 0.93002 0.94216 0.87655 0.90227 0.77727 0.91176 0.90227 0.87288 0.88310 0.89275 0.84058 0.90072 0.91074 0.88756 0.88218 0.87075 0.87747 0.91143 0.88146 0.92363 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.90 127.69 1.14 1.95 16 2 N -0.53 -15.17 4.40 -893.47 -3.93 -19.10 16 3 C 0.05 1.63 5.34 85.56 0.46 2.09 16 4 C 0.45 20.70 7.42 87.66 0.65 21.35 16 5 O -0.60 -32.91 13.97 -3.06 -0.04 -32.95 16 6 N -0.59 -28.62 5.09 -306.99 -1.56 -30.19 16 7 C -0.32 -19.23 10.16 84.04 0.85 -18.38 16 8 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 9 C -0.01 -0.80 5.50 84.92 0.47 -0.34 16 10 N -0.93 -56.84 13.96 21.66 0.30 -56.54 16 11 Si 0.96 39.91 27.74 68.60 1.90 41.81 16 12 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 13 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 14 H -0.24 -8.52 6.52 99.48 0.65 -7.87 16 15 C 0.07 1.52 2.69 46.30 0.12 1.65 16 16 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.12 -1.62 5.33 31.78 0.17 -1.45 16 18 C 0.10 1.16 6.44 86.72 0.56 1.72 16 19 N -0.61 -12.15 3.33 -811.81 -2.70 -14.85 16 20 C 0.53 12.11 7.37 87.66 0.65 12.76 16 21 O -0.59 -19.37 16.15 -3.06 -0.05 -19.42 16 22 C -0.12 -1.66 3.36 -10.94 -0.04 -1.70 16 23 C -0.08 -1.33 7.42 30.98 0.23 -1.10 16 24 C -0.17 -2.10 3.08 -52.37 -0.16 -2.26 16 25 C -0.17 -1.91 10.53 30.45 0.32 -1.59 16 26 C -0.13 -1.07 10.53 30.45 0.32 -0.75 16 27 C -0.07 -0.92 7.64 30.98 0.24 -0.68 16 28 C 0.11 2.65 5.46 86.85 0.47 3.12 16 29 H 0.08 1.95 7.37 -2.39 -0.02 1.93 16 30 H 0.05 1.92 5.79 -2.39 -0.01 1.90 16 31 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.11 3.06 6.79 -2.39 -0.02 3.04 16 33 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 34 H 0.39 15.76 5.76 -92.71 -0.53 15.22 16 35 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.14 1.20 8.09 -2.39 -0.02 1.19 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.55 7.43 -2.39 -0.02 1.53 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.06 1.69 7.68 -2.39 -0.02 1.67 16 Total: -1.00 -82.34 399.20 0.71 -81.63 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.34 Total: 33.22 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.45 Total: 16.39 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -7.89 Total: -120.68 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.09 Total: -52.37 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.90 Total: 41.81 kcal Total: -82.34 0.71 -81.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192284130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.417 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds