Wall clock time and date at job start Tue Mar 31 2020 18:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99726 * 2 1 4 4 C 1.38760 * 120.05758 * 0.25205 * 3 2 1 5 5 C 1.38123 * 119.94553 * 180.28078 * 4 3 2 6 6 C 1.38288 * 120.05293 * 359.71798 * 5 4 3 7 7 C 1.38241 * 120.11546 * 0.02769 * 6 5 4 8 8 C 1.38168 * 120.05250 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02683 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47178 * 135.78493 * 9 8 7 11 11 C 1.52995 * 109.47271 * 15.77606 * 9 8 7 12 12 N 1.46498 * 109.47422 * 185.00302 * 11 9 8 13 13 C 1.34777 * 120.00175 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47202 * 180.02562 * 15 13 12 17 17 N 1.46900 * 109.46963 * 180.02562 * 16 15 13 18 18 C 1.46901 * 111.00278 * 66.04246 * 17 16 15 19 19 C 1.46903 * 110.99775 * 189.99908 * 17 16 15 20 20 N 1.46499 * 109.46683 * 255.77909 * 9 8 7 21 21 C 1.36941 * 120.00387 * 57.74753 * 20 9 8 22 22 H 1.08004 * 119.99718 * 6.00193 * 21 20 9 23 23 C 1.38813 * 120.00171 * 186.01116 * 21 20 9 24 24 N 1.31615 * 120.00139 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99595 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47405 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47145 * 119.99951 * 25 23 21 28 28 H 1.48504 * 109.46889 * 239.99417 * 25 23 21 29 29 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47218 * 299.99890 * 1 2 3 31 31 H 1.09009 * 109.47011 * 60.00492 * 1 2 3 32 32 H 1.07998 * 120.02904 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97553 * 179.74298 * 5 4 3 34 34 H 1.07999 * 119.94522 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.97950 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47227 * 305.00798 * 11 9 8 37 37 H 1.09004 * 109.47186 * 65.00216 * 11 9 8 38 38 H 0.96998 * 119.99632 * 0.02562 * 12 11 9 39 39 H 1.09001 * 109.46913 * 300.00300 * 15 13 12 40 40 H 1.09004 * 109.47082 * 59.99442 * 15 13 12 41 41 H 1.09002 * 109.46588 * 299.99672 * 16 15 13 42 42 H 1.08994 * 109.47610 * 59.99831 * 16 15 13 43 43 H 1.09000 * 109.46959 * 59.99936 * 18 17 16 44 44 H 1.09005 * 109.46842 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.47230 * 300.00074 * 18 17 16 46 46 H 1.08993 * 109.47391 * 59.99875 * 19 17 16 47 47 H 1.08998 * 109.47081 * 180.02562 * 19 17 16 48 48 H 1.09004 * 109.46830 * 299.99166 * 19 17 16 49 49 H 0.97003 * 120.00505 * 237.74113 * 20 9 8 50 50 H 0.97003 * 119.99836 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0006 6 6 3.3017 3.6759 -0.0058 7 6 4.0559 2.5173 -0.0058 8 6 3.4310 1.2850 0.0000 9 6 4.2537 0.0223 0.0006 10 1 3.8376 -0.6821 0.7208 11 6 5.6966 0.3538 0.3866 12 7 6.5221 -0.8510 0.2716 13 6 7.8367 -0.7976 0.5639 14 8 8.3364 0.2479 0.9217 15 6 8.6859 -2.0368 0.4451 16 6 10.1285 -1.7056 0.8324 17 7 10.9564 -2.9134 0.7159 18 6 11.0611 -3.3471 -0.6837 19 6 12.2865 -2.6984 1.3013 20 7 4.2311 -0.5759 -1.3365 21 6 4.6642 0.1456 -2.4168 22 1 5.1123 1.1177 -2.2725 23 6 4.5273 -0.3723 -3.6974 24 7 3.9817 -1.5571 -3.8733 25 14 5.1176 0.6123 -5.1711 26 1 5.6883 1.9026 -4.7079 27 1 6.1595 -0.1584 -5.8962 28 1 3.9738 0.8755 -6.0808 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2127 2.3204 0.0098 33 1 1.3338 4.5114 -0.0007 34 1 3.7920 4.6381 -0.0100 35 1 5.1343 2.5753 -0.0095 36 1 6.0833 1.1243 -0.2805 37 1 5.7237 0.7161 1.4143 38 1 6.1225 -1.6871 -0.0149 39 1 8.2990 -2.8077 1.1115 40 1 8.6591 -2.3985 -0.5829 41 1 10.5156 -0.9346 0.1661 42 1 10.1550 -1.3442 1.8604 43 1 11.5153 -2.5535 -1.2769 44 1 11.6789 -4.2433 -0.7411 45 1 10.0663 -3.5666 -1.0714 46 1 12.1826 -2.4463 2.3566 47 1 12.8789 -3.6079 1.2013 48 1 12.7852 -1.8814 0.7799 49 1 3.9093 -1.4830 -1.4567 50 1 3.8857 -1.9188 -4.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198885367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:38 Heat of formation + Delta-G solvation = -25.790317 kcal Electronic energy + Delta-G solvation = -29563.947378 eV Core-core repulsion = 25592.208386 eV Total energy + Delta-G solvation = -3971.738992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.90572 -39.27786 -37.46065 -37.06812 -35.75127 -33.35406 -32.04409 -31.16886 -29.89266 -29.47986 -27.66040 -27.53227 -26.68368 -25.10218 -24.04191 -22.59259 -21.62200 -21.10660 -19.87447 -19.64729 -17.76666 -17.21538 -16.84182 -15.85857 -15.81072 -15.50689 -15.25670 -15.20806 -15.01641 -14.80966 -14.51928 -14.39274 -13.98914 -13.90496 -13.27590 -13.11846 -13.03823 -12.72998 -12.58200 -12.43863 -12.18906 -11.93981 -11.81239 -11.69461 -11.59975 -11.54194 -11.45048 -10.93662 -10.88823 -10.83654 -10.71730 -10.51930 -10.42676 -9.95933 -9.73107 -9.41815 -8.96707 -8.46551 -8.41975 -8.37152 -7.65549 -7.01524 -5.79589 -3.08878 1.81153 1.94674 3.11128 3.40869 3.48655 3.49836 3.55150 3.73485 4.11621 4.24467 4.59952 4.95219 5.03705 5.14888 5.16688 5.18315 5.27331 5.33086 5.34936 5.43414 5.43843 5.48500 5.54785 5.56802 5.67371 5.69860 5.72425 5.73084 5.75908 5.88138 5.90678 5.94173 5.97905 6.04152 6.04576 6.12482 6.41561 6.48737 6.64021 6.77439 6.89119 6.92475 6.92742 7.02818 7.09349 7.27042 7.73281 7.88932 8.08851 8.37180 8.73389 9.50647 10.00783 10.38107 11.42131 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.003390 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.802499 B = 8257.230997 C = 9499.830710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.301 6.301 3 C 0.146 3.854 4 C -0.216 4.216 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.093 4.093 9 C 0.207 3.793 10 H 0.071 0.929 11 C 0.108 3.892 12 N -0.701 5.701 13 C 0.512 3.488 14 O -0.561 6.561 15 C -0.138 4.138 16 C 0.072 3.928 17 N -0.550 5.550 18 C 0.018 3.982 19 C 0.026 3.974 20 N -0.704 5.704 21 C -0.228 4.228 22 H 0.070 0.930 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.897 3.103 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.404 0.596 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.025 0.975 49 H 0.387 0.613 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.416 -0.036 10.972 11.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.214 6.214 3 C 0.100 3.900 4 C -0.235 4.235 5 C -0.114 4.114 6 C -0.180 4.180 7 C -0.099 4.099 8 C -0.097 4.097 9 C 0.096 3.904 10 H 0.090 0.910 11 C -0.019 4.019 12 N -0.351 5.351 13 C 0.297 3.703 14 O -0.441 6.441 15 C -0.178 4.178 16 C -0.056 4.056 17 N -0.274 5.274 18 C -0.130 4.130 19 C -0.123 4.123 20 N -0.343 5.343 21 C -0.359 4.359 22 H 0.088 0.912 23 C -0.203 4.203 24 N -0.577 5.577 25 Si 0.729 3.271 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.113 0.887 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.222 0.778 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.660 0.220 11.334 11.644 hybrid contribution -0.063 0.799 -1.903 2.065 sum 2.596 1.019 9.432 9.836 Atomic orbital electron populations 1.22945 0.79610 1.03361 1.00522 1.86152 1.20170 1.26738 1.88308 1.18745 0.91740 0.83897 0.95644 1.21089 0.99351 0.92645 1.10396 1.20735 0.94615 0.96473 0.99566 1.20938 0.93858 0.98121 1.05046 1.21020 1.00054 0.91244 0.97571 1.19864 0.90877 0.96651 1.02297 1.19170 0.90444 0.91117 0.89690 0.91049 1.21948 0.92834 0.87484 0.99599 1.45733 1.08325 1.13892 1.67127 1.20451 0.82581 0.90116 0.77113 1.90646 1.72885 1.32200 1.48374 1.21602 0.94903 0.96958 1.04358 1.21817 0.91566 0.89961 1.02289 1.61984 1.13815 1.33631 1.18015 1.22478 1.02609 0.99841 0.88117 1.22352 0.89548 1.00436 0.99923 1.42361 1.76055 1.15270 1.00592 1.19132 1.31261 1.00372 0.85153 0.91247 1.24676 1.01341 0.97081 0.97168 1.69664 1.49749 1.17210 1.21064 0.86263 0.77839 0.79465 0.83573 1.20545 1.21987 1.21990 0.88734 0.93506 0.93052 0.86306 0.86782 0.86703 0.85440 0.91300 0.92707 0.76119 0.88407 0.88805 0.93931 0.90113 0.95512 0.91515 0.90759 0.91345 0.91482 0.95665 0.77837 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.40 16 2 O -0.30 -5.34 9.82 -19.42 -0.19 -5.53 16 3 C 0.15 2.65 6.66 -39.21 -0.26 2.39 16 4 C -0.22 -3.43 9.04 -39.43 -0.36 -3.79 16 5 C -0.10 -1.43 10.04 -39.60 -0.40 -1.83 16 6 C -0.16 -2.54 10.04 -39.56 -0.40 -2.94 16 7 C -0.08 -1.41 8.94 -39.61 -0.35 -1.76 16 8 C -0.09 -1.76 4.72 -104.47 -0.49 -2.25 16 9 C 0.21 3.90 2.69 -69.08 -0.19 3.72 16 10 H 0.07 1.27 7.99 -51.93 -0.41 0.85 16 11 C 0.11 1.94 4.01 -4.05 -0.02 1.92 16 12 N -0.70 -11.88 5.39 -60.30 -0.32 -12.20 16 13 C 0.51 8.65 7.83 -10.98 -0.09 8.57 16 14 O -0.56 -11.23 15.98 5.56 0.09 -11.14 16 15 C -0.14 -1.84 5.62 -27.89 -0.16 -2.00 16 16 C 0.07 0.94 4.25 -3.83 -0.02 0.93 16 17 N -0.55 -6.40 5.02 -251.26 -1.26 -7.66 16 18 C 0.02 0.19 9.32 60.07 0.56 0.75 16 19 C 0.03 0.25 9.57 60.07 0.57 0.82 16 20 N -0.70 -15.94 4.72 -54.55 -0.26 -16.20 16 21 C -0.23 -5.90 8.83 -15.06 -0.13 -6.03 16 22 H 0.07 1.84 7.10 -52.48 -0.37 1.46 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -26.69 13.07 55.49 0.73 -25.96 16 25 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 31 H 0.05 0.66 7.67 -51.92 -0.40 0.26 16 32 H 0.12 1.59 6.30 -52.49 -0.33 1.26 16 33 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 35 H 0.13 2.19 5.83 -52.49 -0.31 1.88 16 36 H 0.07 1.40 5.80 -51.93 -0.30 1.10 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.40 6.51 8.14 -40.82 -0.33 6.18 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.23 6.55 -51.93 -0.34 0.89 16 41 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.08 1.08 8.02 -51.93 -0.42 0.67 16 43 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 45 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 46 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 47 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 48 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.39 9.42 8.04 -40.82 -0.33 9.09 16 50 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -31.73 404.90 -9.02 -40.75 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -8.05 Total: 14.94 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.82 Total: -0.38 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -1.12 Total: -62.03 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.10 Total: -16.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.73 -9.02 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198885367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.956 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds