Wall clock time and date at job start Tue Mar 31 2020 18:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99726 * 2 1 4 4 C 1.38760 * 120.05758 * 0.25205 * 3 2 1 5 5 C 1.38123 * 119.94553 * 180.28078 * 4 3 2 6 6 C 1.38288 * 120.05293 * 359.71798 * 5 4 3 7 7 C 1.38241 * 120.11546 * 0.02769 * 6 5 4 8 8 C 1.38168 * 120.05250 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02683 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47178 * 135.78493 * 9 8 7 11 11 C 1.52995 * 109.47271 * 15.77606 * 9 8 7 12 12 N 1.46498 * 109.47422 * 185.00302 * 11 9 8 13 13 C 1.34777 * 120.00175 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00140 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.52995 * 109.47202 * 180.02562 * 15 13 12 17 17 N 1.46900 * 109.46963 * 180.02562 * 16 15 13 18 18 C 1.46901 * 111.00278 * 66.04246 * 17 16 15 19 19 C 1.46903 * 110.99775 * 189.99908 * 17 16 15 20 20 N 1.46499 * 109.46683 * 255.77909 * 9 8 7 21 21 C 1.36941 * 120.00387 * 57.74753 * 20 9 8 22 22 H 1.08004 * 119.99718 * 6.00193 * 21 20 9 23 23 C 1.38813 * 120.00171 * 186.01116 * 21 20 9 24 24 N 1.31615 * 120.00139 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99595 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47405 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47145 * 119.99951 * 25 23 21 28 28 H 1.48504 * 109.46889 * 239.99417 * 25 23 21 29 29 H 1.09004 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47218 * 299.99890 * 1 2 3 31 31 H 1.09009 * 109.47011 * 60.00492 * 1 2 3 32 32 H 1.07998 * 120.02904 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97553 * 179.74298 * 5 4 3 34 34 H 1.07999 * 119.94522 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.97950 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47227 * 305.00798 * 11 9 8 37 37 H 1.09004 * 109.47186 * 65.00216 * 11 9 8 38 38 H 0.96998 * 119.99632 * 0.02562 * 12 11 9 39 39 H 1.09001 * 109.46913 * 300.00300 * 15 13 12 40 40 H 1.09004 * 109.47082 * 59.99442 * 15 13 12 41 41 H 1.09002 * 109.46588 * 299.99672 * 16 15 13 42 42 H 1.08994 * 109.47610 * 59.99831 * 16 15 13 43 43 H 1.09000 * 109.46959 * 59.99936 * 18 17 16 44 44 H 1.09005 * 109.46842 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.47230 * 300.00074 * 18 17 16 46 46 H 1.08993 * 109.47391 * 59.99875 * 19 17 16 47 47 H 1.08998 * 109.47081 * 180.02562 * 19 17 16 48 48 H 1.09004 * 109.46830 * 299.99166 * 19 17 16 49 49 H 0.97003 * 120.00505 * 237.74113 * 20 9 8 50 50 H 0.97003 * 119.99836 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0006 6 6 3.3017 3.6759 -0.0058 7 6 4.0559 2.5173 -0.0058 8 6 3.4310 1.2850 0.0000 9 6 4.2537 0.0223 0.0006 10 1 3.8376 -0.6821 0.7208 11 6 5.6966 0.3538 0.3866 12 7 6.5221 -0.8510 0.2716 13 6 7.8367 -0.7976 0.5639 14 8 8.3364 0.2479 0.9217 15 6 8.6859 -2.0368 0.4451 16 6 10.1285 -1.7056 0.8324 17 7 10.9564 -2.9134 0.7159 18 6 11.0611 -3.3471 -0.6837 19 6 12.2865 -2.6984 1.3013 20 7 4.2311 -0.5759 -1.3365 21 6 4.6642 0.1456 -2.4168 22 1 5.1123 1.1177 -2.2725 23 6 4.5273 -0.3723 -3.6974 24 7 3.9817 -1.5571 -3.8733 25 14 5.1176 0.6123 -5.1711 26 1 5.6883 1.9026 -4.7079 27 1 6.1595 -0.1584 -5.8962 28 1 3.9738 0.8755 -6.0808 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2127 2.3204 0.0098 33 1 1.3338 4.5114 -0.0007 34 1 3.7920 4.6381 -0.0100 35 1 5.1343 2.5753 -0.0095 36 1 6.0833 1.1243 -0.2805 37 1 5.7237 0.7161 1.4143 38 1 6.1225 -1.6871 -0.0149 39 1 8.2990 -2.8077 1.1115 40 1 8.6591 -2.3985 -0.5829 41 1 10.5156 -0.9346 0.1661 42 1 10.1550 -1.3442 1.8604 43 1 11.5153 -2.5535 -1.2769 44 1 11.6789 -4.2433 -0.7411 45 1 10.0663 -3.5666 -1.0714 46 1 12.1826 -2.4463 2.3566 47 1 12.8789 -3.6079 1.2013 48 1 12.7852 -1.8814 0.7799 49 1 3.9093 -1.4830 -1.4567 50 1 3.8857 -1.9188 -4.7682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198885367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:37 Heat of formation + Delta-G solvation = -48.234067 kcal Electronic energy + Delta-G solvation = -29564.920612 eV Core-core repulsion = 25592.208386 eV Total energy + Delta-G solvation = -3972.712226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.22294 -40.61975 -38.62957 -38.21124 -37.24177 -35.03988 -33.69174 -32.30249 -31.43962 -30.82780 -28.93303 -28.47947 -27.85124 -26.51832 -25.53361 -24.03785 -22.84284 -22.19059 -21.35358 -20.96973 -19.37034 -18.74709 -18.11764 -17.27212 -17.11472 -16.83014 -16.49787 -16.45611 -16.28120 -15.98907 -15.85962 -15.56186 -15.46076 -15.36333 -14.76725 -14.50679 -14.26413 -14.08169 -13.92964 -13.45347 -13.39343 -13.28576 -13.07740 -12.89738 -12.74822 -12.74223 -12.64006 -12.59201 -12.39996 -12.22202 -11.90274 -11.88106 -11.87105 -11.71883 -11.53775 -10.97938 -10.80269 -9.89012 -9.70107 -9.38099 -9.06731 -8.82657 -7.88519 -5.14551 0.52095 0.66315 1.41700 1.45280 1.51745 1.73686 2.30301 2.56158 2.58246 2.96235 3.09365 3.44547 3.87010 3.88829 3.98081 4.02726 4.06227 4.18027 4.26305 4.30045 4.33994 4.38942 4.44708 4.45124 4.49012 4.60568 4.61853 4.65517 4.67675 4.72782 4.76189 4.83948 4.85330 4.94226 4.96834 5.00877 5.06918 5.13933 5.21100 5.49196 5.59414 5.62070 5.65495 5.75335 5.98185 6.02385 6.05931 6.32223 6.66116 6.70563 7.35369 7.42092 8.09671 8.38366 9.33868 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010319 B = 0.003390 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.802499 B = 8257.230997 C = 9499.830710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.327 6.327 3 C 0.127 3.873 4 C -0.219 4.219 5 C -0.090 4.090 6 C -0.167 4.167 7 C -0.094 4.094 8 C -0.124 4.124 9 C 0.214 3.786 10 H 0.081 0.919 11 C 0.119 3.881 12 N -0.701 5.701 13 C 0.509 3.491 14 O -0.594 6.594 15 C -0.127 4.127 16 C 0.078 3.922 17 N -0.554 5.554 18 C 0.016 3.984 19 C 0.023 3.977 20 N -0.706 5.706 21 C -0.203 4.203 22 H 0.062 0.938 23 C -0.061 4.061 24 N -0.958 5.958 25 Si 0.943 3.057 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.299 1.299 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.044 0.956 37 H 0.064 0.936 38 H 0.408 0.592 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.022 0.978 49 H 0.378 0.622 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 0.490 11.871 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.241 6.241 3 C 0.081 3.919 4 C -0.237 4.237 5 C -0.108 4.108 6 C -0.185 4.185 7 C -0.113 4.113 8 C -0.127 4.127 9 C 0.105 3.895 10 H 0.099 0.901 11 C -0.007 4.007 12 N -0.350 5.350 13 C 0.296 3.704 14 O -0.476 6.476 15 C -0.167 4.167 16 C -0.050 4.050 17 N -0.278 5.278 18 C -0.132 4.132 19 C -0.125 4.125 20 N -0.344 5.344 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.610 5.610 25 Si 0.775 3.225 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.226 1.226 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.244 0.756 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.095 0.905 43 H 0.039 0.961 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.041 0.959 49 H 0.211 0.789 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.195 0.764 12.270 12.488 hybrid contribution 0.040 0.701 -2.048 2.165 sum 2.235 1.465 10.222 10.565 Atomic orbital electron populations 1.23216 0.77411 1.04880 1.01613 1.86103 1.22592 1.26990 1.88403 1.18993 0.91846 0.84918 0.96154 1.21447 1.00704 0.92190 1.09387 1.21188 0.94575 0.97549 0.97502 1.21272 0.94508 0.98444 1.04257 1.21123 1.00130 0.91835 0.98213 1.19862 0.91585 0.96598 1.04642 1.19218 0.90816 0.91703 0.87801 0.90136 1.21736 0.92179 0.87341 0.99441 1.45770 1.08542 1.13703 1.67003 1.21070 0.82518 0.90796 0.76028 1.90627 1.73393 1.33762 1.49862 1.21562 0.94432 0.95498 1.05191 1.21690 0.91640 0.90236 1.01458 1.62019 1.14748 1.32431 1.18632 1.22535 1.02818 1.00377 0.87496 1.22443 0.88690 1.01292 1.00037 1.42343 1.75868 1.14798 1.01393 1.19206 1.28900 0.99573 0.85889 0.91999 1.25173 1.03074 0.98096 0.99063 1.69768 1.52006 1.18426 1.20762 0.85509 0.77025 0.78523 0.81412 1.20218 1.22321 1.22630 0.87200 0.91060 0.93131 0.83753 0.83232 0.84285 0.85979 0.93727 0.91741 0.75558 0.86232 0.88293 0.95922 0.90549 0.96085 0.89680 0.91041 0.90833 0.89708 0.95911 0.78885 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -11.38 9.82 -92.41 -0.91 -12.29 16 3 C 0.13 4.50 6.66 22.51 0.15 4.65 16 4 C -0.22 -6.43 9.04 22.37 0.20 -6.23 16 5 C -0.09 -2.43 10.04 22.25 0.22 -2.20 16 6 C -0.17 -4.92 10.04 22.28 0.22 -4.69 16 7 C -0.09 -3.28 8.94 22.25 0.20 -3.08 16 8 C -0.12 -4.63 4.72 -19.77 -0.09 -4.73 16 9 C 0.21 8.13 2.69 44.25 0.12 8.25 16 10 H 0.08 2.87 7.99 -2.39 -0.02 2.85 16 11 C 0.12 4.37 4.01 86.38 0.35 4.71 16 12 N -0.70 -23.84 5.39 -463.07 -2.50 -26.34 16 13 C 0.51 17.22 7.83 87.66 0.69 17.91 16 14 O -0.59 -24.11 15.98 -3.02 -0.05 -24.16 16 15 C -0.13 -3.30 5.62 29.85 0.17 -3.13 16 16 C 0.08 2.03 4.25 86.30 0.37 2.39 16 17 N -0.55 -12.18 5.02 -948.85 -4.76 -16.94 16 18 C 0.02 0.32 9.32 127.69 1.19 1.51 16 19 C 0.02 0.41 9.57 127.69 1.22 1.64 16 20 N -0.71 -32.36 4.72 -326.50 -1.54 -33.90 16 21 C -0.20 -10.63 8.83 84.03 0.74 -9.89 16 22 H 0.06 3.31 7.10 -2.91 -0.02 3.29 16 23 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.96 -55.88 13.07 21.65 0.28 -55.60 16 25 Si 0.94 46.34 29.55 68.60 2.03 48.37 16 26 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 29 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.07 1.35 7.65 -2.39 -0.02 1.33 16 31 H 0.05 1.21 7.67 -2.38 -0.02 1.20 16 32 H 0.14 3.39 6.30 -2.91 -0.02 3.37 16 33 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 35 H 0.12 4.27 5.83 -2.91 -0.02 4.25 16 36 H 0.04 1.86 5.80 -2.39 -0.01 1.85 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.21 16 38 H 0.41 13.17 8.14 -92.71 -0.75 12.41 16 39 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.10 2.52 6.55 -2.39 -0.02 2.50 16 41 H 0.02 0.67 8.08 -2.39 -0.02 0.65 16 42 H 0.08 2.03 8.02 -2.39 -0.02 2.01 16 43 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 1.38 8.12 -2.38 -0.02 1.36 16 45 H 0.07 1.46 6.47 -2.39 -0.02 1.44 16 46 H 0.07 1.23 8.12 -2.39 -0.02 1.21 16 47 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 48 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.38 18.69 8.04 -92.71 -0.75 17.95 16 50 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -68.48 404.90 -0.67 -69.15 By element: Atomic # 1 Polarization: 46.41 SS G_CDS: -0.55 Total: 45.87 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 7.32 Total: 5.84 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -8.51 Total: -132.77 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.96 Total: -36.45 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -68.48 -0.67 -69.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198885367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -68.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds