Wall clock time and date at job start Tue Mar 31 2020 18:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 O 1.21282 * 119.99883 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99829 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99984 * 179.97438 * 6 4 3 8 8 H 1.09003 * 112.88503 * 26.84163 * 7 6 4 9 9 C 1.53949 * 113.66345 * 255.49289 * 7 6 4 10 10 C 1.53943 * 87.29461 * 270.25951 * 9 7 6 11 11 H 1.08997 * 113.66770 * 220.79170 * 10 9 7 12 12 N 1.46506 * 113.66173 * 89.73876 * 10 9 7 13 13 C 1.36931 * 119.99989 * 104.50169 * 12 10 9 14 14 H 1.07998 * 120.00420 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99921 * 180.02562 * 13 12 10 16 16 N 1.31616 * 119.99882 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47292 * 90.00116 * 17 15 13 19 19 H 1.48503 * 109.47268 * 210.00166 * 17 15 13 20 20 H 1.48496 * 109.47301 * 330.00100 * 17 15 13 21 21 C 1.52907 * 86.78730 * 335.26706 * 10 9 7 22 22 C 1.52904 * 121.13988 * 150.62261 * 21 10 9 23 23 C 1.53954 * 86.78518 * 100.81399 * 22 21 10 24 24 C 1.52910 * 121.13363 * 259.18127 * 21 10 9 25 25 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 26 26 O 1.21283 * 119.99649 * 179.97438 * 25 2 1 27 27 C 1.50697 * 119.99774 * 359.72768 * 25 2 1 28 28 C 1.52998 * 117.49400 * 248.74198 * 27 25 2 29 29 C 1.53000 * 117.49649 * 180.08768 * 27 25 2 30 30 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 31 31 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 32 32 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 33 33 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 34 34 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 35 35 H 0.97002 * 120.00637 * 359.97438 * 6 4 3 36 36 H 1.08991 * 113.58118 * 24.86746 * 9 7 6 37 37 H 1.09001 * 113.57838 * 155.65666 * 9 7 6 38 38 H 0.96999 * 119.99615 * 284.50665 * 12 10 9 39 39 H 0.96999 * 119.99726 * 179.97438 * 16 15 13 40 40 H 1.09001 * 113.65980 * 215.28372 * 22 21 10 41 41 H 1.08994 * 113.66464 * 346.34369 * 22 21 10 42 42 H 1.08997 * 113.57694 * 270.13683 * 23 22 21 43 43 H 1.08995 * 113.65385 * 139.35028 * 23 22 21 44 44 H 1.09004 * 113.65968 * 13.65629 * 24 21 10 45 45 H 1.08998 * 113.66374 * 144.61584 * 24 21 10 46 46 H 1.08997 * 115.55555 * 34.41362 * 27 25 2 47 47 H 1.09002 * 117.50309 * 0.02562 * 28 27 25 48 48 H 1.09003 * 117.50179 * 145.02213 * 28 27 25 49 49 H 1.08998 * 117.50026 * 214.97892 * 29 27 25 50 50 H 1.09006 * 117.49705 * 359.97019 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0549 1.0211 -2.3426 6 7 3.1116 2.8511 -1.6670 7 6 3.3562 3.2738 -3.0482 8 1 2.6118 2.8915 -3.7466 9 6 4.8079 3.0575 -3.5127 10 6 5.1096 4.4731 -2.9883 11 1 5.7659 5.0503 -3.6395 12 7 5.5274 4.5034 -1.5844 13 6 6.8447 4.6994 -1.2662 14 1 7.5757 4.8320 -2.0500 15 6 7.2407 4.7275 0.0640 16 7 8.5068 4.9164 0.3699 17 14 5.9763 4.4988 1.4198 18 1 5.8548 3.0550 1.7450 19 1 6.4076 5.2441 2.6298 20 1 4.6614 5.0157 0.9628 21 6 3.6241 4.7723 -3.1930 22 6 2.8956 5.7940 -2.3193 23 6 3.0475 6.7775 -3.4939 24 6 3.1353 5.5483 -4.4166 25 6 2.1389 -1.1673 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3854 -2.4723 0.0051 28 6 1.4635 -3.3276 1.2713 29 6 2.2075 -3.7627 0.0063 30 1 -0.3634 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5139 35 1 3.4268 3.3969 -0.9297 36 1 5.3276 2.2703 -2.9668 37 1 4.9101 2.9620 -4.5937 38 1 4.8708 4.3845 -0.8804 39 1 8.7834 4.9365 1.2994 40 1 1.8611 5.5265 -2.1037 41 1 3.4535 6.0857 -1.4296 42 1 3.9669 7.3617 -3.4572 43 1 2.1634 7.3910 -3.6677 44 1 3.8848 5.6436 -5.2023 45 1 2.1689 5.2108 -4.7913 46 1 0.4455 -2.4749 -0.5468 47 1 2.0596 -2.9462 2.1004 48 1 0.5751 -3.8932 1.5523 49 1 1.8083 -4.6143 -0.5446 50 1 3.2934 -3.6676 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202997541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:09 Heat of formation + Delta-G solvation = 30.777309 kcal Electronic energy + Delta-G solvation = -30328.292036 eV Core-core repulsion = 26359.006001 eV Total energy + Delta-G solvation = -3969.286035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85069 -40.26289 -38.71138 -36.41133 -35.55785 -35.27114 -33.76809 -32.37891 -30.56226 -29.16243 -26.78409 -25.60617 -24.92255 -24.23971 -23.77480 -22.66452 -22.18805 -20.62049 -20.15562 -19.19342 -18.57584 -17.72128 -17.25560 -17.10115 -16.45305 -15.69621 -15.51539 -15.25331 -14.95580 -14.82928 -14.62150 -14.30556 -14.11453 -13.67512 -13.31142 -13.13260 -12.88904 -12.80779 -12.69753 -12.41906 -12.26852 -12.10732 -11.95334 -11.84671 -11.77321 -11.46539 -11.08555 -10.99658 -10.83079 -10.79826 -10.72004 -10.35263 -10.17925 -9.97742 -9.90069 -9.84948 -9.68646 -9.51856 -8.94080 -8.77866 -8.64292 -7.36674 -5.84598 -3.21287 2.33176 2.67643 2.75017 3.20298 3.28119 3.34935 3.39636 3.66253 4.27239 4.48630 4.51879 4.56498 4.64570 4.74039 4.76031 4.86905 4.91373 4.95401 4.98480 5.03231 5.18807 5.25443 5.32241 5.34135 5.35969 5.43355 5.52313 5.56072 5.57789 5.71555 5.78460 5.85786 5.87119 5.90604 5.91863 6.07221 6.14185 6.15031 6.24555 6.30825 6.50655 6.61500 6.67529 6.80664 6.96891 7.16381 7.67506 7.91661 8.07502 8.34439 8.37432 9.10068 9.82109 10.00130 11.33608 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003922 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.128346 B = 7137.011751 C = 8686.505399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.596 5.596 3 C 0.091 3.909 4 C 0.501 3.499 5 O -0.537 6.537 6 N -0.700 5.700 7 C 0.138 3.862 8 H 0.092 0.908 9 C -0.183 4.183 10 C 0.198 3.802 11 H 0.073 0.927 12 N -0.723 5.723 13 C -0.246 4.246 14 H 0.094 0.906 15 C 0.010 3.990 16 N -0.928 5.928 17 Si 0.873 3.127 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.279 1.279 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.133 4.133 24 C -0.105 4.105 25 C 0.547 3.453 26 O -0.530 6.530 27 C -0.191 4.191 28 C -0.152 4.152 29 C -0.148 4.148 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.355 0.645 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.103 0.897 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -7.952 -1.658 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C -0.036 4.036 4 C 0.286 3.714 5 O -0.414 6.414 6 N -0.352 5.352 7 C 0.033 3.967 8 H 0.110 0.890 9 C -0.225 4.225 10 C 0.086 3.914 11 H 0.091 0.909 12 N -0.364 5.364 13 C -0.376 4.376 14 H 0.112 0.888 15 C -0.187 4.187 16 N -0.575 5.575 17 Si 0.703 3.297 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.132 4.132 22 C -0.167 4.167 23 C -0.171 4.171 24 C -0.143 4.143 25 C 0.335 3.665 26 O -0.405 6.405 27 C -0.212 4.212 28 C -0.190 4.190 29 C -0.186 4.186 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.235 0.765 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.189 0.811 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.143 0.857 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.309 -8.391 -2.268 22.091 hybrid contribution -0.768 0.188 1.364 1.576 sum -21.078 -8.203 -0.904 22.636 Atomic orbital electron populations 1.21812 0.78811 1.03644 1.01572 1.47248 1.07072 1.04681 1.73895 1.21356 1.00552 0.86735 0.94908 1.21021 0.77743 0.80819 0.91836 1.90658 1.51633 1.53160 1.45966 1.45701 1.57047 1.23694 1.08772 1.21673 0.97900 0.94380 0.82791 0.89036 1.24230 0.95778 1.02045 1.00476 1.20811 0.90283 0.93273 0.87031 0.90866 1.42444 1.06695 1.86938 1.00348 1.19080 0.83190 1.42055 0.93236 0.88810 1.24644 0.95672 1.01690 0.96647 1.69676 1.14106 1.56066 1.17700 0.86741 0.81408 0.78272 0.83321 1.20574 1.21325 1.20501 1.23547 0.99155 0.92154 0.98305 1.22608 0.99627 0.96413 0.98069 1.22749 1.01807 0.96035 0.96478 1.22501 1.00829 0.95529 0.95432 1.19684 0.87333 0.84307 0.75164 1.90747 1.13829 1.87009 1.48934 1.22185 1.02717 0.90673 1.05637 1.22945 1.03182 1.01466 0.91383 1.22982 1.00319 0.95204 1.00048 0.92299 0.91040 0.90684 0.87404 0.86620 0.76531 0.90675 0.90119 0.81090 0.92901 0.90818 0.90693 0.89826 0.92033 0.91074 0.90236 0.85681 0.88249 0.87799 0.87877 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.26 59.85 0.61 1.32 16 2 N -0.60 -7.62 2.36 -182.96 -0.43 -8.05 16 3 C 0.09 1.25 5.89 -5.20 -0.03 1.22 16 4 C 0.50 8.29 7.90 -10.99 -0.09 8.21 16 5 O -0.54 -10.34 16.07 5.56 0.09 -10.25 16 6 N -0.70 -11.48 4.93 -53.37 -0.26 -11.74 16 7 C 0.14 2.24 4.08 -67.48 -0.28 1.97 16 8 H 0.09 1.50 7.54 -51.93 -0.39 1.11 16 9 C -0.18 -3.28 7.68 -25.75 -0.20 -3.48 16 10 C 0.20 3.70 4.35 -67.48 -0.29 3.41 16 11 H 0.07 1.41 8.12 -51.93 -0.42 0.98 16 12 N -0.72 -16.22 4.56 -52.99 -0.24 -16.47 16 13 C -0.25 -6.73 10.46 -15.06 -0.16 -6.89 16 14 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -28.70 13.97 55.49 0.78 -27.92 16 17 Si 0.87 21.08 27.73 -169.99 -4.71 16.36 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 21 C -0.13 -1.95 0.76 -154.71 -0.12 -2.07 16 22 C -0.13 -1.84 7.18 -26.28 -0.19 -2.03 16 23 C -0.13 -1.68 8.08 -25.75 -0.21 -1.89 16 24 C -0.10 -1.30 7.84 -26.28 -0.21 -1.51 16 25 C 0.55 8.06 7.46 -10.98 -0.08 7.98 16 26 O -0.53 -10.21 15.84 5.56 0.09 -10.12 16 27 C -0.19 -2.00 5.29 -91.77 -0.49 -2.48 16 28 C -0.15 -1.27 10.24 -26.70 -0.27 -1.55 16 29 C -0.15 -1.45 10.05 -26.70 -0.27 -1.72 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.07 0.53 6.00 -51.92 -0.31 0.22 16 33 H 0.11 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.12 1.78 7.42 -51.93 -0.39 1.39 16 35 H 0.40 6.58 6.19 -40.82 -0.25 6.33 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.36 7.66 2.98 -40.82 -0.12 7.54 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 1.23 7.50 -51.93 -0.39 0.84 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.13 1.03 6.44 -51.93 -0.33 0.69 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.11 1.30 7.67 -51.93 -0.40 0.90 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -35.27 401.14 -9.09 -44.37 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -8.09 Total: 17.12 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.35 Total: 0.66 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.16 Total: -64.18 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.71 Total: 16.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.27 -9.09 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202997541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.145 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds