Wall clock time and date at job start Tue Mar 31 2020 18:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50697 * 109.47293 * 270.00491 * 3 2 1 5 5 O 1.21282 * 119.99883 * 359.97438 * 4 3 2 6 6 N 1.34770 * 119.99829 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99984 * 179.97438 * 6 4 3 8 8 H 1.09003 * 112.88503 * 26.84163 * 7 6 4 9 9 C 1.53949 * 113.66345 * 255.49289 * 7 6 4 10 10 C 1.53943 * 87.29461 * 270.25951 * 9 7 6 11 11 H 1.08997 * 113.66770 * 220.79170 * 10 9 7 12 12 N 1.46506 * 113.66173 * 89.73876 * 10 9 7 13 13 C 1.36931 * 119.99989 * 104.50169 * 12 10 9 14 14 H 1.07998 * 120.00420 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99921 * 180.02562 * 13 12 10 16 16 N 1.31616 * 119.99882 * 180.02562 * 15 13 12 17 17 Si 1.86793 * 119.99902 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47292 * 90.00116 * 17 15 13 19 19 H 1.48503 * 109.47268 * 210.00166 * 17 15 13 20 20 H 1.48496 * 109.47301 * 330.00100 * 17 15 13 21 21 C 1.52907 * 86.78730 * 335.26706 * 10 9 7 22 22 C 1.52904 * 121.13988 * 150.62261 * 21 10 9 23 23 C 1.53954 * 86.78518 * 100.81399 * 22 21 10 24 24 C 1.52910 * 121.13363 * 259.18127 * 21 10 9 25 25 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 26 26 O 1.21283 * 119.99649 * 179.97438 * 25 2 1 27 27 C 1.50697 * 119.99774 * 359.72768 * 25 2 1 28 28 C 1.52998 * 117.49400 * 248.74198 * 27 25 2 29 29 C 1.53000 * 117.49649 * 180.08768 * 27 25 2 30 30 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 31 31 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 32 32 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 33 33 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 34 34 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 35 35 H 0.97002 * 120.00637 * 359.97438 * 6 4 3 36 36 H 1.08991 * 113.58118 * 24.86746 * 9 7 6 37 37 H 1.09001 * 113.57838 * 155.65666 * 9 7 6 38 38 H 0.96999 * 119.99615 * 284.50665 * 12 10 9 39 39 H 0.96999 * 119.99726 * 179.97438 * 16 15 13 40 40 H 1.09001 * 113.65980 * 215.28372 * 22 21 10 41 41 H 1.08994 * 113.66464 * 346.34369 * 22 21 10 42 42 H 1.08997 * 113.57694 * 270.13683 * 23 22 21 43 43 H 1.08995 * 113.65385 * 139.35028 * 23 22 21 44 44 H 1.09004 * 113.65968 * 13.65629 * 24 21 10 45 45 H 1.08998 * 113.66374 * 144.61584 * 24 21 10 46 46 H 1.08997 * 115.55555 * 34.41362 * 27 25 2 47 47 H 1.09002 * 117.50309 * 0.02562 * 28 27 25 48 48 H 1.09003 * 117.50179 * 145.02213 * 28 27 25 49 49 H 1.08998 * 117.50026 * 214.97892 * 29 27 25 50 50 H 1.09006 * 117.49705 * 359.97019 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0549 1.0211 -2.3426 6 7 3.1116 2.8511 -1.6670 7 6 3.3562 3.2738 -3.0482 8 1 2.6118 2.8915 -3.7466 9 6 4.8079 3.0575 -3.5127 10 6 5.1096 4.4731 -2.9883 11 1 5.7659 5.0503 -3.6395 12 7 5.5274 4.5034 -1.5844 13 6 6.8447 4.6994 -1.2662 14 1 7.5757 4.8320 -2.0500 15 6 7.2407 4.7275 0.0640 16 7 8.5068 4.9164 0.3699 17 14 5.9763 4.4988 1.4198 18 1 5.8548 3.0550 1.7450 19 1 6.4076 5.2441 2.6298 20 1 4.6614 5.0157 0.9628 21 6 3.6241 4.7723 -3.1930 22 6 2.8956 5.7940 -2.3193 23 6 3.0475 6.7775 -3.4939 24 6 3.1353 5.5483 -4.4166 25 6 2.1389 -1.1673 -0.0005 26 8 3.3517 -1.1672 -0.0010 27 6 1.3854 -2.4723 0.0051 28 6 1.4635 -3.3276 1.2713 29 6 2.2075 -3.7627 0.0063 30 1 -0.3634 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1383 0.5139 35 1 3.4268 3.3969 -0.9297 36 1 5.3276 2.2703 -2.9668 37 1 4.9101 2.9620 -4.5937 38 1 4.8708 4.3845 -0.8804 39 1 8.7834 4.9365 1.2994 40 1 1.8611 5.5265 -2.1037 41 1 3.4535 6.0857 -1.4296 42 1 3.9669 7.3617 -3.4572 43 1 2.1634 7.3910 -3.6677 44 1 3.8848 5.6436 -5.2023 45 1 2.1689 5.2108 -4.7913 46 1 0.4455 -2.4749 -0.5468 47 1 2.0596 -2.9462 2.1004 48 1 0.5751 -3.8932 1.5523 49 1 1.8083 -4.6143 -0.5446 50 1 3.2934 -3.6676 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202997541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:08 Heat of formation + Delta-G solvation = 7.018957 kcal Electronic energy + Delta-G solvation = -30329.322276 eV Core-core repulsion = 26359.006001 eV Total energy + Delta-G solvation = -3970.316275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14421 -41.34841 -39.95282 -37.24732 -36.79198 -36.49868 -35.49802 -33.97862 -32.47744 -30.22513 -27.61648 -26.82318 -26.44237 -25.51994 -24.91881 -23.74791 -23.34350 -21.93471 -21.48345 -20.43026 -19.98425 -18.93335 -18.58536 -18.35889 -17.56899 -16.95577 -16.63866 -16.57902 -16.37467 -16.10616 -15.87679 -15.52725 -15.33085 -15.07193 -14.72253 -14.50684 -13.99791 -13.91600 -13.81675 -13.65163 -13.58718 -13.28780 -13.15979 -12.99146 -12.93340 -12.77701 -12.60005 -12.47215 -12.16737 -11.98813 -11.88590 -11.57414 -11.45711 -11.41020 -11.30883 -11.11149 -11.01036 -10.92914 -10.75990 -9.99850 -9.80726 -9.35430 -8.06633 -5.40993 1.24705 1.28085 1.35714 1.41040 1.47151 1.72448 2.20317 2.42981 2.87065 3.21921 3.23391 3.44909 3.49163 3.63626 3.74189 3.79117 3.88748 3.93058 3.93405 4.01800 4.04219 4.10875 4.13482 4.23066 4.30264 4.52224 4.60818 4.68630 4.70339 4.71084 4.82064 4.83661 4.89708 4.92124 4.93080 5.02925 5.04732 5.12016 5.13799 5.18942 5.19846 5.25333 5.50263 5.56444 5.59222 5.75436 6.17528 6.21627 6.37323 7.00362 7.02285 7.09462 7.76119 7.94699 9.14801 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010647 B = 0.003922 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.128346 B = 7137.011751 C = 8686.505399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.595 5.595 3 C 0.088 3.912 4 C 0.499 3.501 5 O -0.567 6.567 6 N -0.701 5.701 7 C 0.143 3.857 8 H 0.099 0.901 9 C -0.184 4.184 10 C 0.180 3.820 11 H 0.062 0.938 12 N -0.723 5.723 13 C -0.232 4.232 14 H 0.057 0.943 15 C -0.060 4.060 16 N -0.981 5.981 17 Si 0.937 3.063 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.236 1.236 21 C -0.117 4.117 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.094 4.094 25 C 0.531 3.469 26 O -0.593 6.593 27 C -0.198 4.198 28 C -0.128 4.128 29 C -0.162 4.162 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.398 0.602 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.362 0.638 39 H 0.258 0.742 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.155 0.845 47 H 0.085 0.915 48 H 0.142 0.858 49 H 0.130 0.870 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.073 -8.016 -1.555 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.326 5.326 3 C -0.039 4.039 4 C 0.285 3.715 5 O -0.446 6.446 6 N -0.352 5.352 7 C 0.038 3.962 8 H 0.117 0.883 9 C -0.225 4.225 10 C 0.070 3.930 11 H 0.081 0.919 12 N -0.365 5.365 13 C -0.363 4.363 14 H 0.075 0.925 15 C -0.252 4.252 16 N -0.631 5.631 17 Si 0.763 3.237 18 H -0.208 1.208 19 H -0.218 1.218 20 H -0.160 1.160 21 C -0.119 4.119 22 C -0.166 4.166 23 C -0.165 4.165 24 C -0.132 4.132 25 C 0.322 3.678 26 O -0.474 6.474 27 C -0.218 4.218 28 C -0.165 4.165 29 C -0.199 4.199 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.170 0.830 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.172 0.828 47 H 0.104 0.896 48 H 0.160 0.840 49 H 0.148 0.852 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.520 -8.435 -2.207 26.969 hybrid contribution 0.903 0.192 1.201 1.515 sum -24.617 -8.242 -1.006 25.980 Atomic orbital electron populations 1.22139 0.75820 1.04693 1.03761 1.47480 1.08902 1.03764 1.72452 1.21452 1.00844 0.88496 0.93061 1.21551 0.76935 0.80216 0.92768 1.90634 1.52962 1.53839 1.47167 1.45754 1.56809 1.23820 1.08786 1.21650 0.96388 0.95217 0.82970 0.88324 1.24210 0.97129 0.99815 1.01367 1.21022 0.93054 0.94015 0.84919 0.91943 1.42300 1.04870 1.87088 1.02281 1.19014 0.84798 1.40107 0.92405 0.92481 1.25469 0.97851 1.02416 0.99449 1.69872 1.16740 1.58525 1.18002 0.85679 0.80619 0.77959 0.79417 1.20800 1.21767 1.15974 1.23365 0.95560 0.91873 1.01087 1.22670 1.00276 0.96229 0.97466 1.22713 1.02362 0.96070 0.95402 1.22567 1.02021 0.94217 0.94374 1.20562 0.86997 0.86204 0.74079 1.90712 1.16618 1.88030 1.52007 1.22276 1.03236 0.88501 1.07835 1.23054 1.03694 0.99847 0.89909 1.23038 0.98722 0.96013 1.02137 0.89449 0.90433 0.89277 0.82966 0.88805 0.76567 0.94488 0.88021 0.80329 0.93329 0.88487 0.92909 0.91306 0.89338 0.90564 0.87698 0.82796 0.89627 0.84021 0.85203 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 10.26 127.77 1.31 2.32 16 2 N -0.60 -14.20 2.36 -851.13 -2.01 -16.21 16 3 C 0.09 2.29 5.89 85.63 0.50 2.80 16 4 C 0.50 15.98 7.90 87.66 0.69 16.67 16 5 O -0.57 -21.33 16.07 -3.04 -0.05 -21.38 16 6 N -0.70 -22.07 4.93 -441.15 -2.17 -24.24 16 7 C 0.14 4.45 4.08 45.28 0.18 4.63 16 8 H 0.10 3.00 7.54 -2.39 -0.02 2.98 16 9 C -0.18 -6.63 7.68 31.23 0.24 -6.39 16 10 C 0.18 6.77 4.35 45.28 0.20 6.97 16 11 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 12 N -0.72 -32.85 4.56 -321.57 -1.47 -34.32 16 13 C -0.23 -13.23 10.46 84.04 0.88 -12.35 16 14 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 15 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 16 N -0.98 -63.39 13.97 21.65 0.30 -63.08 16 17 Si 0.94 44.04 27.73 68.60 1.90 45.94 16 18 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 20 H -0.24 -9.30 6.52 99.48 0.65 -8.65 16 21 C -0.12 -3.29 0.76 -52.31 -0.04 -3.33 16 22 C -0.13 -3.27 7.18 30.88 0.22 -3.04 16 23 C -0.13 -2.80 8.08 31.23 0.25 -2.55 16 24 C -0.09 -2.00 7.84 30.89 0.24 -1.76 16 25 C 0.53 15.51 7.46 87.65 0.65 16.17 16 26 O -0.59 -23.99 15.84 -3.04 -0.05 -24.04 16 27 C -0.20 -3.77 5.29 -11.54 -0.06 -3.83 16 28 C -0.13 -1.83 10.24 30.62 0.31 -1.52 16 29 C -0.16 -3.03 10.05 30.62 0.31 -2.73 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.09 0.92 6.00 -2.38 -0.01 0.91 16 33 H 0.15 2.48 8.07 -2.39 -0.02 2.46 16 34 H 0.09 2.90 7.42 -2.39 -0.02 2.88 16 35 H 0.40 12.51 6.19 -92.71 -0.57 11.94 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.36 15.36 2.98 -92.71 -0.28 15.09 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 1.59 7.50 -2.39 -0.02 1.58 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.15 1.98 6.44 -2.39 -0.02 1.96 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 1.93 7.67 -2.38 -0.02 1.91 16 Total: -1.00 -83.79 401.14 2.87 -80.92 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: 0.05 Total: 47.44 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.36 Total: 8.98 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -5.35 Total: -137.85 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.10 Total: -45.42 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Total: -83.79 2.87 -80.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202997541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.939 kcal (2) G-P(sol) polarization free energy of solvation -83.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds