Wall clock time and date at job start Tue Mar 31 2020 18:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99733 * 2 1 4 4 C 1.34771 * 120.00018 * 179.97438 * 2 1 3 5 5 O 1.21283 * 119.99992 * 6.46901 * 4 2 1 6 6 C 1.50701 * 120.00251 * 186.46966 * 4 2 1 7 7 C 1.50699 * 115.55082 * 73.05918 * 6 4 2 8 8 O 1.21285 * 119.99974 * 234.33383 * 7 6 4 9 9 N 1.34771 * 119.99774 * 54.33295 * 7 6 4 10 10 C 1.46502 * 119.99775 * 184.81257 * 9 7 6 11 11 H 1.08996 * 112.88908 * 28.23184 * 10 9 7 12 12 C 1.53959 * 113.66180 * 256.76433 * 10 9 7 13 13 C 1.53954 * 87.29290 * 270.26314 * 12 10 9 14 14 H 1.09001 * 113.74420 * 220.78197 * 13 12 10 15 15 N 1.46503 * 113.66610 * 89.73995 * 13 12 10 16 16 C 1.36938 * 119.99955 * 103.40597 * 15 13 12 17 17 H 1.07992 * 120.00253 * 0.27491 * 16 15 13 18 18 C 1.38814 * 119.99698 * 180.27809 * 16 15 13 19 19 N 1.31615 * 119.99883 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47179 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47028 * 120.00090 * 20 18 16 23 23 H 1.48502 * 109.47148 * 240.00011 * 20 18 16 24 24 C 1.52910 * 86.78342 * 335.26487 * 13 12 10 25 25 C 1.52906 * 121.13690 * 259.18298 * 24 13 12 26 26 C 1.53958 * 86.78257 * 209.38051 * 25 24 13 27 27 C 1.52909 * 121.13581 * 150.61757 * 24 13 12 28 28 C 1.52996 * 117.49894 * 218.73461 * 6 4 2 29 29 C 1.53008 * 117.49425 * 287.39550 * 6 4 2 30 30 H 1.08993 * 109.47591 * 270.00823 * 1 2 3 31 31 H 1.08999 * 109.47058 * 30.00922 * 1 2 3 32 32 H 1.09003 * 109.46891 * 150.00313 * 1 2 3 33 33 H 1.09003 * 109.46823 * 273.71283 * 3 2 1 34 34 H 1.08998 * 109.47427 * 33.70777 * 3 2 1 35 35 H 1.09003 * 109.46947 * 153.71677 * 3 2 1 36 36 H 0.97001 * 120.00395 * 4.80874 * 9 7 6 37 37 H 1.08988 * 113.58196 * 155.65896 * 12 10 9 38 38 H 1.09001 * 113.57805 * 24.86201 * 12 10 9 39 39 H 0.96998 * 119.99363 * 283.68627 * 15 13 12 40 40 H 0.97006 * 119.99726 * 180.02562 * 19 18 16 41 41 H 1.09002 * 113.66232 * 323.84744 * 25 24 13 42 42 H 1.08996 * 113.66540 * 94.90764 * 25 24 13 43 43 H 1.08998 * 113.57807 * 270.12976 * 26 25 24 44 44 H 1.09004 * 113.57832 * 139.33365 * 26 25 24 45 45 H 1.08997 * 113.66630 * 265.09597 * 27 24 13 46 46 H 1.09000 * 113.66225 * 36.15080 * 27 24 13 47 47 H 1.09002 * 117.49914 * 214.99365 * 28 6 4 48 48 H 1.08997 * 117.49935 * 0.02562 * 28 6 4 49 49 H 1.08993 * 117.49949 * 359.97384 * 29 6 4 50 50 H 1.09004 * 117.49742 * 144.97524 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5383 -2.2142 -0.1173 6 6 3.6387 -1.1713 0.1476 7 6 4.1576 -0.8502 1.5255 8 8 4.9632 0.0436 1.6771 9 7 3.7264 -1.5564 2.5893 10 6 4.1487 -1.1774 3.9400 11 1 4.3680 -0.1137 4.0328 12 6 5.2432 -2.0892 4.5239 13 6 4.1099 -2.9669 5.0858 14 1 4.2982 -3.3339 6.0947 15 7 3.6730 -4.0219 4.1680 16 6 4.0646 -5.3172 4.3777 17 1 4.6918 -5.5618 5.2220 18 6 3.6553 -6.3159 3.5048 19 7 2.8904 -6.0179 2.4760 20 14 4.1888 -8.0830 3.7911 21 1 5.0383 -8.1527 5.0071 22 1 2.9891 -8.9387 3.9750 23 1 4.9637 -8.5623 2.6185 24 6 3.2345 -1.7139 5.0421 25 6 2.9569 -0.8988 6.3056 26 6 1.6135 -0.5154 5.6586 27 6 1.7225 -1.8126 4.8367 28 6 4.4275 -2.1827 -0.6864 29 6 4.4670 -0.6957 -1.0478 30 1 -0.3634 0.0001 1.0276 31 1 -0.3633 0.8899 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3215 1.6167 -1.0256 34 1 1.6388 2.0109 0.5703 35 1 3.1772 1.1227 0.4551 36 1 3.1365 -2.3156 2.4608 37 1 5.8456 -1.6088 5.2947 38 1 5.8456 -2.5883 3.7649 39 1 3.1096 -3.8021 3.4096 40 1 2.6041 -6.7158 1.8662 41 1 2.8518 -1.5069 7.2042 42 1 3.6343 -0.0555 6.4399 43 1 1.6637 0.3897 5.0534 44 1 0.7778 -0.5115 6.3584 45 1 1.4138 -1.6994 3.7975 46 1 1.2706 -2.6775 5.3224 47 1 5.3219 -2.6159 -0.2385 48 1 3.8617 -2.8449 -1.3418 49 1 3.9272 -0.3803 -1.9406 50 1 5.3871 -0.1504 -0.8375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203596208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:11 Heat of formation + Delta-G solvation = 27.201612 kcal Electronic energy + Delta-G solvation = -31511.209619 eV Core-core repulsion = 27541.768530 eV Total energy + Delta-G solvation = -3969.441089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96391 -40.17536 -38.54299 -35.98862 -35.52733 -35.19135 -33.61582 -32.22977 -29.78322 -28.43826 -26.75246 -25.55251 -25.22370 -24.24060 -23.81256 -22.56695 -22.36796 -20.87413 -20.11721 -19.18956 -18.11176 -17.38781 -17.12414 -16.25982 -16.06010 -15.63494 -15.43329 -15.24985 -14.89593 -14.65104 -14.49622 -14.01830 -13.79829 -13.35080 -13.01341 -12.97873 -12.77942 -12.72756 -12.54297 -12.44986 -12.18277 -12.06467 -11.90522 -11.59881 -11.53224 -11.39854 -11.03522 -10.93597 -10.85182 -10.69324 -10.53680 -10.16591 -10.08743 -9.96649 -9.78028 -9.69175 -9.44611 -9.35676 -8.83720 -8.74639 -8.55890 -6.98718 -5.77343 -3.07976 2.45380 2.69600 2.88723 3.21457 3.43008 3.48987 3.51168 3.84033 4.39022 4.52635 4.71698 4.74292 4.79660 4.87271 4.95517 5.02846 5.03867 5.14531 5.17123 5.23817 5.32791 5.43526 5.51132 5.53432 5.62042 5.65835 5.66479 5.75393 5.84530 5.88761 5.93676 5.95317 6.01169 6.07879 6.11313 6.12865 6.26081 6.32495 6.37967 6.41882 6.62030 6.69843 6.73135 6.93928 7.08287 7.22293 7.71637 7.82289 8.14521 8.37904 8.43721 9.50099 10.05199 10.38745 11.43833 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.005020 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.321968 B = 5576.774646 C = 6782.832553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.618 5.618 3 C 0.074 3.926 4 C 0.552 3.448 5 O -0.509 6.509 6 C -0.194 4.194 7 C 0.563 3.437 8 O -0.543 6.543 9 N -0.686 5.686 10 C 0.152 3.848 11 H 0.089 0.911 12 C -0.185 4.185 13 C 0.180 3.820 14 H 0.064 0.936 15 N -0.700 5.700 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.131 4.131 25 C -0.103 4.103 26 C -0.141 4.141 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.135 4.135 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.380 0.620 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.103 0.897 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 16.726 -2.917 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.069 4.069 4 C 0.338 3.662 5 O -0.382 6.382 6 C -0.201 4.201 7 C 0.348 3.652 8 O -0.421 6.421 9 N -0.337 5.337 10 C 0.047 3.953 11 H 0.107 0.893 12 C -0.227 4.227 13 C 0.067 3.933 14 H 0.082 0.918 15 N -0.340 5.340 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.178 4.178 27 C -0.153 4.153 28 C -0.156 4.156 29 C -0.173 4.173 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.121 0.879 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.931 16.577 -2.813 16.925 hybrid contribution -0.217 -1.195 -0.219 1.234 sum -2.148 15.383 -3.033 15.825 Atomic orbital electron populations 1.21658 0.78895 1.03156 1.02059 1.47614 1.06985 1.06259 1.74431 1.21917 0.98235 0.84923 1.01860 1.19234 0.87095 0.83415 0.76432 1.90804 1.69115 1.30960 1.47339 1.21403 0.92443 1.12668 0.93575 1.18859 0.80837 0.81439 0.84068 1.90662 1.33819 1.32215 1.85445 1.45710 1.50070 1.32801 1.05158 1.21445 0.95565 0.98208 0.80108 0.89339 1.24292 0.98236 0.99304 1.00887 1.21037 0.91100 0.86886 0.94228 0.91814 1.42110 1.59382 1.02923 1.29548 1.19259 1.25896 0.83836 1.08686 0.90955 1.24758 1.00181 0.98009 0.97556 1.69664 1.39129 1.32278 1.16026 0.86143 0.77670 0.85229 0.77244 1.20600 1.21885 1.21890 1.23398 0.95052 0.98899 0.95960 1.22480 0.96825 0.98795 0.95965 1.22856 0.97470 0.98116 0.99362 1.22510 0.95374 0.97472 0.99991 1.23084 1.00757 0.92155 0.99558 1.23116 1.01070 0.98212 0.94887 0.92588 0.91292 0.90230 0.92487 0.91336 0.89699 0.74875 0.90495 0.90916 0.78433 0.93355 0.89543 0.91625 0.90926 0.91872 0.92212 0.89355 0.87090 0.86873 0.87860 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.50 59.85 0.63 1.55 16 2 N -0.62 -7.93 3.27 -189.51 -0.62 -8.55 16 3 C 0.07 0.75 9.97 59.85 0.60 1.34 16 4 C 0.55 8.98 6.79 -10.99 -0.07 8.91 16 5 O -0.51 -10.26 16.44 5.55 0.09 -10.17 16 6 C -0.19 -3.02 1.16 -156.81 -0.18 -3.21 16 7 C 0.56 9.79 6.26 -10.99 -0.07 9.72 16 8 O -0.54 -10.02 15.48 5.55 0.09 -9.94 16 9 N -0.69 -12.51 4.67 -53.36 -0.25 -12.76 16 10 C 0.15 2.60 4.03 -67.47 -0.27 2.33 16 11 H 0.09 1.47 7.64 -51.93 -0.40 1.08 16 12 C -0.18 -3.36 7.68 -25.74 -0.20 -3.56 16 13 C 0.18 3.54 4.35 -67.48 -0.29 3.24 16 14 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 15 N -0.70 -16.96 4.97 -52.99 -0.26 -17.23 16 16 C -0.25 -6.68 9.98 -15.06 -0.15 -6.83 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.46 13.06 55.49 0.72 -26.74 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 C -0.13 -2.13 0.76 -154.71 -0.12 -2.25 16 25 C -0.10 -1.35 7.84 -26.28 -0.21 -1.56 16 26 C -0.14 -1.82 8.08 -25.74 -0.21 -2.03 16 27 C -0.12 -1.88 7.16 -26.28 -0.19 -2.07 16 28 C -0.12 -1.74 9.79 -26.69 -0.26 -2.01 16 29 C -0.14 -1.65 8.92 -26.69 -0.24 -1.89 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.08 1.02 4.94 -51.93 -0.26 0.77 16 36 H 0.41 8.47 5.90 -40.82 -0.24 8.23 16 37 H 0.08 1.21 8.14 -51.94 -0.42 0.79 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.38 9.74 5.41 -40.82 -0.22 9.51 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.04 7.48 -51.93 -0.39 0.65 16 46 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 47 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 48 H 0.11 1.69 8.13 -51.93 -0.42 1.26 16 49 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.11 1.36 7.81 -51.93 -0.41 0.95 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -32.28 402.20 -8.69 -40.97 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -8.17 Total: 19.71 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.33 Total: 1.36 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.41 Total: -65.27 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.18 Total: -20.11 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.28 -8.69 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.177 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds