Wall clock time and date at job start Tue Mar 31 2020 18:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99883 * 2 1 4 4 C 1.34776 * 120.00519 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99668 * 5.96009 * 4 2 1 6 6 C 1.50694 * 120.00131 * 185.96016 * 4 2 1 7 7 C 1.50696 * 115.55393 * 66.80823 * 6 4 2 8 8 O 1.21280 * 120.00561 * 244.75795 * 7 6 4 9 9 N 1.34784 * 119.99868 * 64.75025 * 7 6 4 10 10 C 1.46498 * 120.00115 * 184.76652 * 9 7 6 11 11 H 1.09008 * 112.88209 * 333.92895 * 10 9 7 12 12 C 1.53950 * 113.66221 * 105.39300 * 10 9 7 13 13 C 1.53952 * 87.29372 * 139.20840 * 12 10 9 14 14 H 1.09000 * 113.66376 * 220.79488 * 13 12 10 15 15 N 1.46495 * 113.66542 * 89.73753 * 13 12 10 16 16 C 1.36939 * 119.99984 * 107.81167 * 15 13 12 17 17 H 1.07997 * 120.00281 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00065 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99931 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46998 * 120.00430 * 20 18 16 23 23 H 1.48509 * 109.47267 * 240.00399 * 20 18 16 24 24 C 1.52903 * 113.66193 * 202.58470 * 10 9 7 25 25 C 1.52903 * 121.13792 * 346.34177 * 24 10 9 26 26 C 1.53960 * 86.78191 * 100.82358 * 25 24 10 27 27 C 1.52907 * 121.13997 * 94.91030 * 24 10 9 28 28 C 1.53002 * 117.49861 * 212.47744 * 6 4 2 29 29 C 1.53003 * 117.50167 * 281.13490 * 6 4 2 30 30 H 1.08998 * 109.46789 * 269.99532 * 1 2 3 31 31 H 1.09002 * 109.47469 * 29.99917 * 1 2 3 32 32 H 1.09004 * 109.46669 * 150.00151 * 1 2 3 33 33 H 1.08998 * 109.47064 * 240.32332 * 3 2 1 34 34 H 1.09004 * 109.46858 * 0.32469 * 3 2 1 35 35 H 1.09000 * 109.47057 * 120.31956 * 3 2 1 36 36 H 0.97001 * 119.99908 * 4.76577 * 9 7 6 37 37 H 1.08994 * 113.57868 * 24.60548 * 12 10 9 38 38 H 1.09006 * 113.57912 * 253.80583 * 12 10 9 39 39 H 0.97006 * 120.00245 * 287.81372 * 15 13 12 40 40 H 0.96991 * 120.00294 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.66771 * 215.29014 * 25 24 10 42 42 H 1.09003 * 113.66244 * 346.35364 * 25 24 10 43 43 H 1.09000 * 113.57496 * 270.13464 * 26 25 24 44 44 H 1.08992 * 113.65053 * 139.34813 * 26 25 24 45 45 H 1.09001 * 113.65874 * 13.64664 * 27 24 10 46 46 H 1.08998 * 113.66525 * 144.61442 * 27 24 10 47 47 H 1.08999 * 117.50289 * 215.00287 * 28 6 4 48 48 H 1.09000 * 117.49773 * 0.02562 * 28 6 4 49 49 H 1.09004 * 117.49271 * 359.97438 * 29 6 4 50 50 H 1.08995 * 117.49778 * 144.97193 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5375 -2.2146 -0.1101 6 6 3.6398 -1.1706 0.1350 7 6 4.1736 -0.7029 1.4644 8 8 4.8385 0.3093 1.5288 9 7 3.9118 -1.4095 2.5820 10 6 4.3408 -0.9011 3.8872 11 1 5.2043 -0.2392 3.8214 12 6 3.1896 -0.3356 4.7387 13 6 3.8491 -1.0170 5.9515 14 1 3.1372 -1.4879 6.6294 15 7 4.8231 -0.1700 6.6443 16 6 4.5227 0.3546 7.8731 17 1 3.5680 0.1435 8.3316 18 6 5.4458 1.1568 8.5298 19 7 6.6096 1.4137 7.9713 20 14 5.0363 1.8717 10.2062 21 1 3.6757 1.4358 10.6114 22 1 6.0266 1.3930 11.2038 23 1 5.0811 3.3545 10.1365 24 6 4.4807 -1.9882 4.9534 25 6 3.9022 -3.3869 4.7370 26 6 5.3342 -3.8306 4.3869 27 6 5.8306 -2.6476 5.2379 28 6 4.4117 -2.2774 -0.5862 29 6 4.4626 -0.8408 -1.1121 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 2.8198 1.3291 -0.8929 34 1 1.4891 2.0973 0.0058 35 1 2.8284 1.3241 0.8871 36 1 3.4395 -2.2545 2.5220 37 1 2.2142 -0.7494 4.4832 38 1 3.1858 0.7528 4.7990 39 1 5.6808 0.0194 6.2326 40 1 7.2544 1.9746 8.4299 41 1 3.5124 -3.8446 5.6462 42 1 3.2079 -3.4484 3.8989 43 1 5.5731 -3.7363 3.3276 44 1 5.6025 -4.8047 4.7958 45 1 6.6769 -2.1184 4.7999 46 1 5.9835 -2.8960 6.2881 47 1 5.3055 -2.6673 -0.0992 48 1 3.8339 -3.0028 -1.1591 49 1 3.9182 -0.6217 -2.0307 50 1 5.3896 -0.2851 -0.9710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203596209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:14 Heat of formation + Delta-G solvation = 21.974834 kcal Electronic energy + Delta-G solvation = -30603.249082 eV Core-core repulsion = 26633.581343 eV Total energy + Delta-G solvation = -3969.667739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11499 -40.29532 -38.73876 -36.29762 -35.71823 -35.07303 -34.05796 -32.39243 -29.65605 -28.62229 -26.98734 -25.55380 -25.42609 -24.28534 -23.78937 -22.81292 -22.58195 -21.08584 -20.14409 -19.41371 -18.23983 -17.55805 -17.07077 -16.53874 -16.28463 -15.97589 -15.70970 -15.29895 -15.04742 -14.87567 -14.41321 -14.16514 -13.92075 -13.30813 -13.22377 -13.01021 -12.93605 -12.80357 -12.69241 -12.49644 -12.23691 -12.09761 -11.95139 -11.90195 -11.75942 -11.52070 -11.35653 -10.95868 -10.90389 -10.82622 -10.66669 -10.27336 -10.17897 -10.05726 -9.90203 -9.77618 -9.60026 -9.42308 -8.96213 -8.85244 -8.69764 -6.99338 -5.79950 -3.09400 2.13131 2.48640 2.64846 3.04647 3.41711 3.47529 3.49751 3.52656 4.11332 4.45421 4.49788 4.52567 4.61353 4.72031 4.86836 4.87766 4.95566 4.99609 5.13520 5.14589 5.25236 5.30551 5.35715 5.38605 5.41810 5.50612 5.53524 5.62786 5.64870 5.78085 5.78745 5.88878 5.97724 5.99928 6.06273 6.10572 6.14269 6.21750 6.37964 6.47570 6.59497 6.67030 6.74518 6.81769 6.97526 7.04626 7.57540 7.69421 7.81606 8.21758 8.38235 9.49524 10.06057 10.40689 11.42157 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003247 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.544431 B = 8620.927810 C = 9309.539378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.613 5.613 3 C 0.074 3.926 4 C 0.559 3.441 5 O -0.531 6.531 6 C -0.196 4.196 7 C 0.555 3.445 8 O -0.526 6.526 9 N -0.706 5.706 10 C 0.151 3.849 11 H 0.116 0.884 12 C -0.182 4.182 13 C 0.187 3.813 14 H 0.068 0.932 15 N -0.700 5.700 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.141 4.141 27 C -0.112 4.112 28 C -0.129 4.129 29 C -0.130 4.130 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.255 0.745 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.105 0.895 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 -7.135 -19.128 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.346 5.346 3 C -0.069 4.069 4 C 0.346 3.654 5 O -0.408 6.408 6 C -0.203 4.203 7 C 0.339 3.661 8 O -0.402 6.402 9 N -0.356 5.356 10 C 0.048 3.952 11 H 0.134 0.866 12 C -0.224 4.224 13 C 0.073 3.927 14 H 0.086 0.914 15 N -0.338 5.338 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.130 4.130 25 C -0.149 4.149 26 C -0.179 4.179 27 C -0.150 4.150 28 C -0.167 4.167 29 C -0.167 4.167 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.221 0.779 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.123 0.877 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.046 -6.850 -18.907 21.660 hybrid contribution -0.218 0.338 0.740 0.842 sum -8.264 -6.512 -18.167 20.994 Atomic orbital electron populations 1.21736 0.78692 1.03254 1.02249 1.47652 1.07197 1.06524 1.73214 1.21984 0.97260 0.84296 1.03346 1.19082 0.86988 0.83363 0.75987 1.90700 1.69398 1.31265 1.49425 1.21492 0.92516 1.10959 0.95304 1.18954 0.79822 0.83723 0.83587 1.90739 1.38641 1.24772 1.86046 1.46105 1.58430 1.24612 1.06433 1.22364 0.99092 0.95641 0.78116 0.86582 1.24314 0.96720 1.01889 0.99525 1.20779 0.91629 0.90072 0.90194 0.91373 1.42094 1.16263 1.56114 1.19289 1.19307 1.00235 1.23841 0.94061 0.90971 1.24751 0.96311 1.00700 0.98857 1.69672 1.07227 1.42093 1.38673 0.86125 0.77406 0.78685 0.83991 1.20525 1.21856 1.21845 1.23487 0.98066 0.93720 0.97724 1.22523 0.96235 0.94909 1.01195 1.22869 0.96560 0.98544 0.99891 1.22542 0.96283 0.95790 1.00391 1.23098 1.00823 0.91945 1.00833 1.23078 1.01201 0.98608 0.93830 0.92379 0.90976 0.90364 0.91693 0.90375 0.90673 0.76481 0.91367 0.90910 0.77919 0.93457 0.89523 0.92325 0.90934 0.91896 0.91783 0.89367 0.87269 0.86954 0.87709 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.45 59.85 0.63 1.35 16 2 N -0.61 -6.62 3.27 -189.51 -0.62 -7.24 16 3 C 0.07 0.71 9.69 59.85 0.58 1.29 16 4 C 0.56 7.01 6.90 -10.99 -0.08 6.93 16 5 O -0.53 -7.87 16.28 5.56 0.09 -7.78 16 6 C -0.20 -2.27 1.38 -156.81 -0.22 -2.48 16 7 C 0.56 7.92 5.95 -10.98 -0.07 7.86 16 8 O -0.53 -9.11 15.24 5.56 0.08 -9.03 16 9 N -0.71 -9.86 5.30 -53.37 -0.28 -10.14 16 10 C 0.15 2.50 4.03 -67.49 -0.27 2.23 16 11 H 0.12 2.28 7.47 -51.92 -0.39 1.89 16 12 C -0.18 -3.22 7.68 -25.75 -0.20 -3.42 16 13 C 0.19 3.62 4.36 -67.48 -0.29 3.32 16 14 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 15 N -0.70 -17.04 5.09 -52.99 -0.27 -17.31 16 16 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C -0.13 -2.02 0.92 -154.72 -0.14 -2.16 16 25 C -0.11 -1.43 7.46 -26.28 -0.20 -1.63 16 26 C -0.14 -1.79 8.08 -25.74 -0.21 -2.00 16 27 C -0.11 -1.79 7.49 -26.28 -0.20 -1.99 16 28 C -0.13 -1.21 9.76 -26.69 -0.26 -1.47 16 29 C -0.13 -1.18 9.02 -26.69 -0.24 -1.43 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 32 H 0.08 0.73 7.35 -51.93 -0.38 0.35 16 33 H 0.06 0.55 7.47 -51.93 -0.39 0.16 16 34 H 0.08 0.57 7.80 -51.93 -0.40 0.17 16 35 H 0.07 0.93 5.89 -51.93 -0.31 0.62 16 36 H 0.40 5.07 6.68 -40.82 -0.27 4.80 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.39 10.11 7.81 -40.82 -0.32 9.79 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.69 6.42 -51.93 -0.33 0.35 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 47 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.11 1.00 8.02 -51.93 -0.42 0.58 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.12 1.10 7.98 -51.93 -0.41 0.68 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -32.18 404.24 -8.84 -41.02 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -8.23 Total: 14.98 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -1.41 Total: -0.72 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.45 Total: -61.67 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: 0.18 Total: -16.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.18 -8.84 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.995 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds