Wall clock time and date at job start Tue Mar 31 2020 18:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99883 * 2 1 4 4 C 1.34776 * 120.00519 * 180.02562 * 2 1 3 5 5 O 1.21279 * 119.99668 * 5.96009 * 4 2 1 6 6 C 1.50694 * 120.00131 * 185.96016 * 4 2 1 7 7 C 1.50696 * 115.55393 * 66.80823 * 6 4 2 8 8 O 1.21280 * 120.00561 * 244.75795 * 7 6 4 9 9 N 1.34784 * 119.99868 * 64.75025 * 7 6 4 10 10 C 1.46498 * 120.00115 * 184.76652 * 9 7 6 11 11 H 1.09008 * 112.88209 * 333.92895 * 10 9 7 12 12 C 1.53950 * 113.66221 * 105.39300 * 10 9 7 13 13 C 1.53952 * 87.29372 * 139.20840 * 12 10 9 14 14 H 1.09000 * 113.66376 * 220.79488 * 13 12 10 15 15 N 1.46495 * 113.66542 * 89.73753 * 13 12 10 16 16 C 1.36939 * 119.99984 * 107.81167 * 15 13 12 17 17 H 1.07997 * 120.00281 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00065 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00169 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99931 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47437 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46998 * 120.00430 * 20 18 16 23 23 H 1.48509 * 109.47267 * 240.00399 * 20 18 16 24 24 C 1.52903 * 113.66193 * 202.58470 * 10 9 7 25 25 C 1.52903 * 121.13792 * 346.34177 * 24 10 9 26 26 C 1.53960 * 86.78191 * 100.82358 * 25 24 10 27 27 C 1.52907 * 121.13997 * 94.91030 * 24 10 9 28 28 C 1.53002 * 117.49861 * 212.47744 * 6 4 2 29 29 C 1.53003 * 117.50167 * 281.13490 * 6 4 2 30 30 H 1.08998 * 109.46789 * 269.99532 * 1 2 3 31 31 H 1.09002 * 109.47469 * 29.99917 * 1 2 3 32 32 H 1.09004 * 109.46669 * 150.00151 * 1 2 3 33 33 H 1.08998 * 109.47064 * 240.32332 * 3 2 1 34 34 H 1.09004 * 109.46858 * 0.32469 * 3 2 1 35 35 H 1.09000 * 109.47057 * 120.31956 * 3 2 1 36 36 H 0.97001 * 119.99908 * 4.76577 * 9 7 6 37 37 H 1.08994 * 113.57868 * 24.60548 * 12 10 9 38 38 H 1.09006 * 113.57912 * 253.80583 * 12 10 9 39 39 H 0.97006 * 120.00245 * 287.81372 * 15 13 12 40 40 H 0.96991 * 120.00294 * 179.97438 * 19 18 16 41 41 H 1.08996 * 113.66771 * 215.29014 * 25 24 10 42 42 H 1.09003 * 113.66244 * 346.35364 * 25 24 10 43 43 H 1.09000 * 113.57496 * 270.13464 * 26 25 24 44 44 H 1.08992 * 113.65053 * 139.34813 * 26 25 24 45 45 H 1.09001 * 113.65874 * 13.64664 * 27 24 10 46 46 H 1.08998 * 113.66525 * 144.61442 * 27 24 10 47 47 H 1.08999 * 117.50289 * 215.00287 * 28 6 4 48 48 H 1.09000 * 117.49773 * 0.02562 * 28 6 4 49 49 H 1.09004 * 117.49271 * 359.97438 * 29 6 4 50 50 H 1.08995 * 117.49778 * 144.97193 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5375 -2.2146 -0.1101 6 6 3.6398 -1.1706 0.1350 7 6 4.1736 -0.7029 1.4644 8 8 4.8385 0.3093 1.5288 9 7 3.9118 -1.4095 2.5820 10 6 4.3408 -0.9011 3.8872 11 1 5.2043 -0.2392 3.8214 12 6 3.1896 -0.3356 4.7387 13 6 3.8491 -1.0170 5.9515 14 1 3.1372 -1.4879 6.6294 15 7 4.8231 -0.1700 6.6443 16 6 4.5227 0.3546 7.8731 17 1 3.5680 0.1435 8.3316 18 6 5.4458 1.1568 8.5298 19 7 6.6096 1.4137 7.9713 20 14 5.0363 1.8717 10.2062 21 1 3.6757 1.4358 10.6114 22 1 6.0266 1.3930 11.2038 23 1 5.0811 3.3545 10.1365 24 6 4.4807 -1.9882 4.9534 25 6 3.9022 -3.3869 4.7370 26 6 5.3342 -3.8306 4.3869 27 6 5.8306 -2.6476 5.2379 28 6 4.4117 -2.2774 -0.5862 29 6 4.4626 -0.8408 -1.1121 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8901 -0.5138 33 1 2.8198 1.3291 -0.8929 34 1 1.4891 2.0973 0.0058 35 1 2.8284 1.3241 0.8871 36 1 3.4395 -2.2545 2.5220 37 1 2.2142 -0.7494 4.4832 38 1 3.1858 0.7528 4.7990 39 1 5.6808 0.0194 6.2326 40 1 7.2544 1.9746 8.4299 41 1 3.5124 -3.8446 5.6462 42 1 3.2079 -3.4484 3.8989 43 1 5.5731 -3.7363 3.3276 44 1 5.6025 -4.8047 4.7958 45 1 6.6769 -2.1184 4.7999 46 1 5.9835 -2.8960 6.2881 47 1 5.3055 -2.6673 -0.0992 48 1 3.8339 -3.0028 -1.1591 49 1 3.9182 -0.6217 -2.0307 50 1 5.3896 -0.2851 -0.9710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203596209.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:13 Heat of formation + Delta-G solvation = 0.792255 kcal Electronic energy + Delta-G solvation = -30604.167628 eV Core-core repulsion = 26633.581343 eV Total energy + Delta-G solvation = -3970.586285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24949 -41.45285 -39.86362 -37.16784 -36.64203 -36.56144 -35.56412 -34.09017 -31.54767 -29.36188 -27.87347 -26.81588 -26.73314 -25.67430 -25.30674 -24.01527 -23.47786 -22.20947 -21.51238 -20.50222 -19.48759 -19.12407 -18.46474 -17.48846 -17.34326 -17.13979 -16.84820 -16.72776 -16.24738 -15.98142 -15.76227 -15.54284 -15.11800 -14.90446 -14.37868 -14.13035 -14.09650 -13.98453 -13.61783 -13.53411 -13.37908 -13.33870 -13.16623 -12.99602 -12.89849 -12.82660 -12.65208 -12.55048 -12.22588 -12.14366 -12.00539 -11.80162 -11.72154 -11.39212 -11.31561 -11.10912 -10.97296 -10.75440 -10.67381 -10.01054 -9.79745 -9.00014 -7.95153 -5.24134 1.13673 1.44022 1.47088 1.47543 1.57602 1.84487 1.97133 2.54313 2.65737 3.27735 3.35625 3.37539 3.45758 3.52476 3.66455 3.74038 3.78403 3.89094 4.01415 4.17036 4.18071 4.20727 4.35124 4.41629 4.49935 4.56054 4.60124 4.63308 4.65454 4.71494 4.81076 4.84212 4.86199 4.87226 4.92971 4.98086 5.06542 5.08366 5.09068 5.19432 5.24213 5.33329 5.36559 5.51749 5.54344 5.67894 6.11797 6.26490 6.42298 6.90862 7.08485 7.32417 8.07814 8.30886 9.28255 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014271 B = 0.003247 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.544431 B = 8620.927810 C = 9309.539378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.075 3.925 4 C 0.557 3.443 5 O -0.558 6.558 6 C -0.210 4.210 7 C 0.557 3.443 8 O -0.561 6.561 9 N -0.696 5.696 10 C 0.164 3.836 11 H 0.079 0.921 12 C -0.170 4.170 13 C 0.169 3.831 14 H 0.071 0.929 15 N -0.713 5.713 16 C -0.241 4.241 17 H 0.079 0.921 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.972 3.028 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.118 4.118 25 C -0.098 4.098 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.117 4.117 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -8.670 -20.600 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C -0.068 4.068 4 C 0.344 3.656 5 O -0.436 6.436 6 C -0.216 4.216 7 C 0.343 3.657 8 O -0.439 6.439 9 N -0.347 5.347 10 C 0.059 3.941 11 H 0.097 0.903 12 C -0.212 4.212 13 C 0.058 3.942 14 H 0.089 0.911 15 N -0.350 5.350 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.265 4.265 19 N -0.619 5.619 20 Si 0.801 3.199 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.223 1.223 24 C -0.120 4.120 25 C -0.136 4.136 26 C -0.160 4.160 27 C -0.161 4.161 28 C -0.154 4.154 29 C -0.154 4.154 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.247 0.753 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.928 -8.419 -20.405 24.204 hybrid contribution 0.304 0.842 1.145 1.453 sum -9.624 -7.578 -19.260 22.825 Atomic orbital electron populations 1.21891 0.77466 1.04423 1.02482 1.47815 1.08145 1.06424 1.72094 1.22018 0.97671 0.84609 1.02452 1.19191 0.87169 0.83453 0.75801 1.90682 1.69877 1.32136 1.50943 1.21352 0.92412 1.13537 0.94323 1.19383 0.78960 0.82936 0.84440 1.90727 1.40255 1.26286 1.86682 1.45924 1.58338 1.24946 1.05466 1.21843 0.97221 0.95385 0.79670 0.90255 1.24147 0.98213 0.99931 0.98877 1.21040 0.91452 0.90832 0.90896 0.91106 1.42204 1.16671 1.57100 1.18992 1.19703 1.00069 1.22720 0.94776 0.90338 1.25540 0.96452 1.01977 1.02539 1.69834 1.08357 1.43480 1.40241 0.85095 0.77688 0.77337 0.79762 1.18864 1.22082 1.22347 1.23381 0.98688 0.94513 0.95422 1.22542 0.96896 0.91685 1.02470 1.22791 0.95500 0.97841 0.99840 1.22549 0.95681 0.97800 1.00089 1.23221 1.00427 0.91951 0.99798 1.23191 1.00532 0.98456 0.93251 0.92582 0.88077 0.90982 0.90434 0.87939 0.93687 0.75253 0.88892 0.93908 0.79504 0.94079 0.88556 0.90215 0.89814 0.89924 0.93579 0.91048 0.86556 0.86005 0.85720 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.45 127.77 1.34 2.55 16 2 N -0.61 -12.15 3.27 -871.88 -2.85 -15.01 16 3 C 0.07 1.33 9.69 127.77 1.24 2.56 16 4 C 0.56 12.99 6.90 87.66 0.61 13.60 16 5 O -0.56 -15.51 16.28 -3.03 -0.05 -15.56 16 6 C -0.21 -4.52 1.38 -53.68 -0.07 -4.59 16 7 C 0.56 15.65 5.95 87.65 0.52 16.17 16 8 O -0.56 -19.89 15.24 -3.03 -0.05 -19.94 16 9 N -0.70 -18.85 5.30 -441.15 -2.34 -21.19 16 10 C 0.16 5.48 4.03 45.28 0.18 5.67 16 11 H 0.08 3.31 7.47 -2.38 -0.02 3.29 16 12 C -0.17 -6.05 7.68 31.23 0.24 -5.81 16 13 C 0.17 6.61 4.36 45.29 0.20 6.81 16 14 H 0.07 2.72 8.10 -2.39 -0.02 2.70 16 15 N -0.71 -35.96 5.09 -321.55 -1.64 -37.60 16 16 C -0.24 -13.34 9.97 84.03 0.84 -12.50 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 20 Si 0.97 46.34 29.55 68.60 2.03 48.36 16 21 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 24 C -0.12 -3.69 0.92 -52.32 -0.05 -3.73 16 25 C -0.10 -2.27 7.46 30.89 0.23 -2.04 16 26 C -0.12 -2.79 8.08 31.23 0.25 -2.54 16 27 C -0.12 -3.94 7.49 30.88 0.23 -3.71 16 28 C -0.12 -1.90 9.76 30.62 0.30 -1.60 16 29 C -0.12 -1.90 9.02 30.62 0.28 -1.62 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.94 7.92 -2.39 -0.02 0.92 16 32 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 33 H 0.08 1.17 7.47 -2.39 -0.02 1.15 16 34 H 0.10 1.27 7.80 -2.38 -0.02 1.26 16 35 H 0.04 1.10 5.89 -2.39 -0.01 1.08 16 36 H 0.41 9.49 6.68 -92.71 -0.62 8.87 16 37 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.37 20.61 7.81 -92.70 -0.72 19.89 16 40 H 0.25 15.03 8.31 -92.72 -0.77 14.26 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.08 1.55 6.42 -2.39 -0.02 1.54 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.12 1.81 8.02 -2.39 -0.02 1.79 16 49 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 50 H 0.11 1.96 7.98 -2.39 -0.02 1.94 16 Total: -1.00 -72.49 404.24 1.79 -70.70 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -0.39 Total: 44.38 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.79 Total: 5.48 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -6.55 Total: -133.43 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: -0.10 Total: -35.50 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.49 1.79 -70.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596209.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.493 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds