Wall clock time and date at job start Tue Mar 31 2020 18:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00160 * 2 1 4 4 C 1.34776 * 119.99839 * 180.02562 * 2 1 3 5 5 O 1.21282 * 119.99973 * 5.01225 * 4 2 1 6 6 C 1.50698 * 120.00114 * 184.74624 * 4 2 1 7 7 C 1.50710 * 115.54638 * 286.09062 * 6 4 2 8 8 O 1.21278 * 119.99927 * 120.92816 * 7 6 4 9 9 N 1.34778 * 119.99843 * 300.92650 * 7 6 4 10 10 C 1.46495 * 119.99978 * 174.76762 * 9 7 6 11 11 H 1.09000 * 112.88707 * 13.40240 * 10 9 7 12 12 C 1.53945 * 113.66506 * 241.92838 * 10 9 7 13 13 C 1.53948 * 87.29510 * 220.79555 * 12 10 9 14 14 H 1.09001 * 113.66272 * 139.20947 * 13 12 10 15 15 N 1.46504 * 113.74678 * 270.24718 * 13 12 10 16 16 C 1.36934 * 120.00066 * 252.22654 * 15 13 12 17 17 H 1.07997 * 120.00111 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00063 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00010 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46998 * 90.00476 * 20 18 16 22 22 H 1.48505 * 109.47149 * 210.00515 * 20 18 16 23 23 H 1.48501 * 109.47027 * 330.00142 * 20 18 16 24 24 C 1.52908 * 86.78484 * 24.73197 * 13 12 10 25 25 C 1.52911 * 121.13530 * 100.81617 * 24 13 12 26 26 C 1.53951 * 86.78201 * 100.82139 * 25 24 13 27 27 C 1.52904 * 121.13615 * 209.37995 * 24 13 12 28 28 C 1.52995 * 117.50433 * 140.38402 * 6 4 2 29 29 C 1.52995 * 117.50371 * 71.75758 * 6 4 2 30 30 H 1.09002 * 109.46466 * 270.00248 * 1 2 3 31 31 H 1.09000 * 109.47093 * 29.99290 * 1 2 3 32 32 H 1.08994 * 109.47537 * 150.00005 * 1 2 3 33 33 H 1.09004 * 109.46636 * 264.57714 * 3 2 1 34 34 H 1.08996 * 109.47171 * 24.57686 * 3 2 1 35 35 H 1.09001 * 109.46879 * 144.58109 * 3 2 1 36 36 H 0.97001 * 120.00063 * 354.77079 * 9 7 6 37 37 H 1.08995 * 113.58058 * 335.39671 * 12 10 9 38 38 H 1.09004 * 113.58059 * 106.19510 * 12 10 9 39 39 H 0.96995 * 119.99784 * 72.23113 * 15 13 12 40 40 H 0.96995 * 120.00457 * 179.97438 * 19 18 16 41 41 H 1.08991 * 113.66656 * 215.29498 * 25 24 13 42 42 H 1.09005 * 113.66044 * 346.35285 * 25 24 13 43 43 H 1.09004 * 113.58467 * 270.13257 * 26 25 24 44 44 H 1.08994 * 113.58153 * 139.33467 * 26 25 24 45 45 H 1.08999 * 113.66546 * 13.65156 * 27 24 13 46 46 H 1.09004 * 113.66277 * 144.71334 * 27 24 13 47 47 H 1.09000 * 117.49632 * 359.97438 * 28 6 4 48 48 H 1.09003 * 117.50302 * 145.01783 * 28 6 4 49 49 H 1.08998 * 117.50345 * 214.98356 * 29 6 4 50 50 H 1.09004 * 117.49470 * 0.02562 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5359 -2.2155 -0.0928 6 6 3.6419 -1.1696 0.1075 7 6 4.3833 -0.7394 -1.1322 8 8 5.1323 0.2135 -1.0908 9 7 4.2139 -1.4138 -2.2867 10 6 4.8434 -0.9289 -3.5174 11 1 5.5989 -0.1648 -3.3345 12 6 3.8368 -0.5540 -4.6202 13 6 4.7998 -1.2154 -5.6227 14 1 4.2965 -1.8051 -6.3889 15 7 5.7986 -0.2970 -6.1752 16 6 5.7006 0.1191 -7.4761 17 1 4.8868 -0.2294 -8.0947 18 6 6.6466 0.9898 -7.9995 19 7 7.6381 1.4149 -7.2455 20 14 6.5126 1.5580 -9.7739 21 1 5.6994 2.7990 -9.8361 22 1 7.8704 1.8285 -10.3110 23 1 5.8614 0.4982 -10.5852 24 6 5.3147 -2.0473 -4.4476 25 6 4.8581 -3.4920 -4.2415 26 6 6.2008 -3.9140 -4.8652 27 6 6.7572 -2.5529 -4.4087 28 6 4.2862 -2.2513 0.9767 29 6 4.2537 -0.8001 1.4602 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 2.4633 1.5347 -1.0231 34 1 1.5699 2.0507 0.4274 35 1 3.1045 1.1646 0.5956 36 1 3.6751 -2.2203 -2.3028 37 1 2.8800 -1.0683 -4.5304 38 1 3.7282 0.5210 -4.7643 39 1 6.5293 0.0162 -5.6196 40 1 8.2994 2.0230 -7.6112 41 1 4.7550 -3.7730 -3.1934 42 1 3.9911 -3.7668 -4.8423 43 1 6.1618 -4.0279 -5.9486 44 1 6.6653 -4.7644 -4.3662 45 1 7.4073 -2.0775 -5.1432 46 1 7.1880 -2.5700 -3.4076 47 1 3.6228 -2.9611 1.4708 48 1 5.2464 -2.6523 0.6520 49 1 5.1925 -0.2463 1.4537 50 1 3.5689 -0.5558 2.2723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203596210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:17 Heat of formation + Delta-G solvation = 20.876057 kcal Electronic energy + Delta-G solvation = -30494.551469 eV Core-core repulsion = 26524.836083 eV Total energy + Delta-G solvation = -3969.715386 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08589 -40.25284 -38.76191 -36.26854 -35.78152 -35.02608 -34.08200 -32.34279 -29.69917 -28.64555 -26.97060 -25.52575 -25.39895 -24.16106 -23.90176 -22.83083 -22.44282 -21.08791 -20.36364 -19.29086 -18.12363 -17.59488 -16.97458 -16.57432 -16.30755 -15.96458 -15.76858 -15.13192 -15.05861 -14.91101 -14.49948 -14.03852 -13.95964 -13.31020 -13.21912 -13.01749 -12.90910 -12.79270 -12.68185 -12.53047 -12.29226 -12.15025 -11.96154 -11.93419 -11.63986 -11.39309 -11.35712 -10.93670 -10.88212 -10.81408 -10.70047 -10.24812 -10.17349 -10.02396 -9.88835 -9.77573 -9.54016 -9.45655 -8.98959 -8.88801 -8.61160 -7.01711 -5.80510 -3.10375 2.14146 2.47751 2.61916 3.07499 3.41861 3.47127 3.48769 3.52394 4.10225 4.44842 4.47579 4.51401 4.62273 4.80068 4.87813 4.94360 4.99232 5.03355 5.07916 5.21109 5.24591 5.32702 5.35045 5.38720 5.41106 5.49073 5.52869 5.59732 5.67622 5.77284 5.83140 5.93422 5.98788 6.00539 6.05937 6.11820 6.16319 6.20717 6.43443 6.56975 6.63384 6.68136 6.79927 6.87176 6.96015 7.06331 7.60194 7.68424 7.80760 8.23757 8.37487 9.48759 10.04627 10.39464 11.41439 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003195 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.528333 B = 8762.890940 C = 9454.478706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.612 5.612 3 C 0.073 3.927 4 C 0.558 3.442 5 O -0.531 6.531 6 C -0.196 4.196 7 C 0.555 3.445 8 O -0.527 6.527 9 N -0.704 5.704 10 C 0.136 3.864 11 H 0.119 0.881 12 C -0.181 4.181 13 C 0.197 3.803 14 H 0.069 0.931 15 N -0.700 5.700 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.133 4.133 27 C -0.124 4.124 28 C -0.127 4.127 29 C -0.133 4.133 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.387 0.613 40 H 0.256 0.744 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 -6.659 18.147 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.346 5.346 3 C -0.070 4.070 4 C 0.345 3.655 5 O -0.407 6.407 6 C -0.203 4.203 7 C 0.338 3.662 8 O -0.404 6.404 9 N -0.353 5.353 10 C 0.032 3.968 11 H 0.137 0.863 12 C -0.224 4.224 13 C 0.084 3.916 14 H 0.087 0.913 15 N -0.337 5.337 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.205 4.205 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.171 4.171 27 C -0.161 4.161 28 C -0.165 4.165 29 C -0.170 4.170 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.222 0.778 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.136 0.864 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.562 -6.431 17.878 21.738 hybrid contribution -0.186 0.309 -0.750 0.832 sum -10.748 -6.122 17.128 21.127 Atomic orbital electron populations 1.21702 0.78693 1.03610 1.01866 1.47655 1.07192 1.06510 1.73195 1.21965 0.97471 0.84415 1.03116 1.19144 0.87023 0.83410 0.75970 1.90705 1.69463 1.31216 1.49295 1.21488 0.92855 1.11356 0.94575 1.18956 0.81321 0.82876 0.82999 1.90736 1.37278 1.27829 1.84519 1.46014 1.52151 1.28846 1.08251 1.22538 0.96572 0.97383 0.80303 0.86297 1.24296 0.97872 1.02269 0.97948 1.20619 0.90006 0.90147 0.90840 0.91336 1.42106 1.28335 1.51965 1.11331 1.19252 1.08311 1.22160 0.87867 0.90998 1.24754 0.97446 1.00145 0.98191 1.69663 1.15317 1.37094 1.35553 0.86189 0.76766 0.78619 0.84579 1.21682 1.21759 1.20710 1.23629 0.97215 0.93345 0.98573 1.22533 0.97900 0.94615 1.00285 1.22738 0.96395 0.97083 1.00837 1.22611 0.96340 0.96038 1.01159 1.23083 1.02096 0.92111 0.99176 1.23099 1.03112 0.98420 0.92374 0.92575 0.90894 0.90279 0.91936 0.90670 0.90081 0.76503 0.91268 0.90912 0.77839 0.93374 0.90659 0.91502 0.90075 0.92305 0.89909 0.91162 0.87075 0.87222 0.86447 0.87661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.45 59.85 0.63 1.32 16 2 N -0.61 -6.45 3.27 -189.52 -0.62 -7.07 16 3 C 0.07 0.68 9.75 59.85 0.58 1.27 16 4 C 0.56 6.92 6.85 -10.99 -0.08 6.84 16 5 O -0.53 -7.83 16.47 5.56 0.09 -7.74 16 6 C -0.20 -2.26 1.21 -156.81 -0.19 -2.45 16 7 C 0.55 7.99 6.52 -10.98 -0.07 7.92 16 8 O -0.53 -9.22 16.04 5.56 0.09 -9.14 16 9 N -0.70 -10.00 5.06 -53.37 -0.27 -10.27 16 10 C 0.14 2.27 4.17 -67.49 -0.28 1.99 16 11 H 0.12 2.37 7.24 -51.93 -0.38 2.00 16 12 C -0.18 -3.19 7.69 -25.75 -0.20 -3.39 16 13 C 0.20 3.84 4.36 -67.48 -0.29 3.54 16 14 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 15 N -0.70 -17.03 4.86 -52.99 -0.26 -17.28 16 16 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 19 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -2.02 0.92 -154.71 -0.14 -2.16 16 25 C -0.12 -1.54 7.14 -26.28 -0.19 -1.73 16 26 C -0.13 -1.88 8.08 -25.74 -0.21 -2.08 16 27 C -0.12 -2.04 7.62 -26.28 -0.20 -2.24 16 28 C -0.13 -1.18 9.80 -26.74 -0.26 -1.44 16 29 C -0.13 -1.20 8.32 -26.74 -0.22 -1.42 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.08 0.76 7.36 -51.93 -0.38 0.38 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.50 8.03 -51.93 -0.42 0.09 16 35 H 0.08 0.77 5.83 -51.93 -0.30 0.47 16 36 H 0.40 5.20 7.47 -40.82 -0.30 4.89 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.39 10.14 7.61 -40.82 -0.31 9.83 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.91 7.24 -51.93 -0.38 0.53 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.61 7.58 -51.93 -0.39 1.21 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.12 1.10 7.89 -51.93 -0.41 0.69 16 50 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 406.09 15.07 6.12 6.12 Total: -1.00 -32.09 406.09 -8.82 -40.91 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -8.31 Total: 15.49 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.37 Total: -1.16 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.42 Total: -61.56 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.18 Total: -16.87 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.09 -8.82 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.789 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds