Wall clock time and date at job start Tue Mar 31 2020 18:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00160 * 2 1 4 4 C 1.34776 * 119.99839 * 180.02562 * 2 1 3 5 5 O 1.21282 * 119.99973 * 5.01225 * 4 2 1 6 6 C 1.50698 * 120.00114 * 184.74624 * 4 2 1 7 7 C 1.50710 * 115.54638 * 286.09062 * 6 4 2 8 8 O 1.21278 * 119.99927 * 120.92816 * 7 6 4 9 9 N 1.34778 * 119.99843 * 300.92650 * 7 6 4 10 10 C 1.46495 * 119.99978 * 174.76762 * 9 7 6 11 11 H 1.09000 * 112.88707 * 13.40240 * 10 9 7 12 12 C 1.53945 * 113.66506 * 241.92838 * 10 9 7 13 13 C 1.53948 * 87.29510 * 220.79555 * 12 10 9 14 14 H 1.09001 * 113.66272 * 139.20947 * 13 12 10 15 15 N 1.46504 * 113.74678 * 270.24718 * 13 12 10 16 16 C 1.36934 * 120.00066 * 252.22654 * 15 13 12 17 17 H 1.07997 * 120.00111 * 0.02562 * 16 15 13 18 18 C 1.38814 * 120.00063 * 179.97438 * 16 15 13 19 19 N 1.31619 * 120.00010 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46998 * 90.00476 * 20 18 16 22 22 H 1.48505 * 109.47149 * 210.00515 * 20 18 16 23 23 H 1.48501 * 109.47027 * 330.00142 * 20 18 16 24 24 C 1.52908 * 86.78484 * 24.73197 * 13 12 10 25 25 C 1.52911 * 121.13530 * 100.81617 * 24 13 12 26 26 C 1.53951 * 86.78201 * 100.82139 * 25 24 13 27 27 C 1.52904 * 121.13615 * 209.37995 * 24 13 12 28 28 C 1.52995 * 117.50433 * 140.38402 * 6 4 2 29 29 C 1.52995 * 117.50371 * 71.75758 * 6 4 2 30 30 H 1.09002 * 109.46466 * 270.00248 * 1 2 3 31 31 H 1.09000 * 109.47093 * 29.99290 * 1 2 3 32 32 H 1.08994 * 109.47537 * 150.00005 * 1 2 3 33 33 H 1.09004 * 109.46636 * 264.57714 * 3 2 1 34 34 H 1.08996 * 109.47171 * 24.57686 * 3 2 1 35 35 H 1.09001 * 109.46879 * 144.58109 * 3 2 1 36 36 H 0.97001 * 120.00063 * 354.77079 * 9 7 6 37 37 H 1.08995 * 113.58058 * 335.39671 * 12 10 9 38 38 H 1.09004 * 113.58059 * 106.19510 * 12 10 9 39 39 H 0.96995 * 119.99784 * 72.23113 * 15 13 12 40 40 H 0.96995 * 120.00457 * 179.97438 * 19 18 16 41 41 H 1.08991 * 113.66656 * 215.29498 * 25 24 13 42 42 H 1.09005 * 113.66044 * 346.35285 * 25 24 13 43 43 H 1.09004 * 113.58467 * 270.13257 * 26 25 24 44 44 H 1.08994 * 113.58153 * 139.33467 * 26 25 24 45 45 H 1.08999 * 113.66546 * 13.65156 * 27 24 13 46 46 H 1.09004 * 113.66277 * 144.71334 * 27 24 13 47 47 H 1.09000 * 117.49632 * 359.97438 * 28 6 4 48 48 H 1.09003 * 117.50302 * 145.01783 * 28 6 4 49 49 H 1.08998 * 117.50345 * 214.98356 * 29 6 4 50 50 H 1.09004 * 117.49470 * 0.02562 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5359 -2.2155 -0.0928 6 6 3.6419 -1.1696 0.1075 7 6 4.3833 -0.7394 -1.1322 8 8 5.1323 0.2135 -1.0908 9 7 4.2139 -1.4138 -2.2867 10 6 4.8434 -0.9289 -3.5174 11 1 5.5989 -0.1648 -3.3345 12 6 3.8368 -0.5540 -4.6202 13 6 4.7998 -1.2154 -5.6227 14 1 4.2965 -1.8051 -6.3889 15 7 5.7986 -0.2970 -6.1752 16 6 5.7006 0.1191 -7.4761 17 1 4.8868 -0.2294 -8.0947 18 6 6.6466 0.9898 -7.9995 19 7 7.6381 1.4149 -7.2455 20 14 6.5126 1.5580 -9.7739 21 1 5.6994 2.7990 -9.8361 22 1 7.8704 1.8285 -10.3110 23 1 5.8614 0.4982 -10.5852 24 6 5.3147 -2.0473 -4.4476 25 6 4.8581 -3.4920 -4.2415 26 6 6.2008 -3.9140 -4.8652 27 6 6.7572 -2.5529 -4.4087 28 6 4.2862 -2.2513 0.9767 29 6 4.2537 -0.8001 1.4602 30 1 -0.3632 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 2.4633 1.5347 -1.0231 34 1 1.5699 2.0507 0.4274 35 1 3.1045 1.1646 0.5956 36 1 3.6751 -2.2203 -2.3028 37 1 2.8800 -1.0683 -4.5304 38 1 3.7282 0.5210 -4.7643 39 1 6.5293 0.0162 -5.6196 40 1 8.2994 2.0230 -7.6112 41 1 4.7550 -3.7730 -3.1934 42 1 3.9911 -3.7668 -4.8423 43 1 6.1618 -4.0279 -5.9486 44 1 6.6653 -4.7644 -4.3662 45 1 7.4073 -2.0775 -5.1432 46 1 7.1880 -2.5700 -3.4076 47 1 3.6228 -2.9611 1.4708 48 1 5.2464 -2.6523 0.6520 49 1 5.1925 -0.2463 1.4537 50 1 3.5689 -0.5558 2.2723 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203596210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:16 Heat of formation + Delta-G solvation = -0.101546 kcal Electronic energy + Delta-G solvation = -30495.461126 eV Core-core repulsion = 26524.836083 eV Total energy + Delta-G solvation = -3970.625043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20302 -41.44814 -39.89026 -37.15095 -36.67039 -36.50116 -35.66499 -34.01951 -31.58441 -29.36464 -27.84990 -26.78576 -26.75862 -25.65261 -25.31133 -23.91242 -23.49688 -22.21377 -21.73736 -20.35082 -19.49529 -19.02407 -18.49047 -17.55166 -17.36808 -17.06268 -16.76882 -16.68995 -16.30579 -15.98012 -15.81628 -15.57575 -15.10911 -14.86232 -14.33397 -14.13426 -14.11667 -13.90809 -13.61955 -13.57362 -13.50985 -13.33611 -13.15450 -12.97842 -12.84214 -12.71037 -12.69146 -12.57838 -12.23314 -12.19442 -12.01267 -11.80502 -11.69686 -11.38073 -11.31680 -11.07708 -10.90322 -10.78947 -10.74469 -9.91752 -9.81571 -9.02879 -7.95363 -5.24812 1.14955 1.43235 1.46963 1.48440 1.56835 1.83221 2.00103 2.54001 2.65212 3.27153 3.35777 3.38366 3.50177 3.56659 3.65717 3.73413 3.78906 3.94186 4.00356 4.13893 4.19483 4.20217 4.34759 4.39049 4.50596 4.56634 4.62318 4.62534 4.67600 4.74556 4.81556 4.82290 4.84618 4.85931 4.87476 5.00467 5.07044 5.07994 5.09886 5.20496 5.27378 5.35429 5.38717 5.52155 5.57602 5.68319 6.11573 6.25884 6.43544 6.91127 7.09299 7.31868 8.06508 8.29909 9.27820 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014308 B = 0.003195 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.528333 B = 8762.890940 C = 9454.478706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.074 3.926 4 C 0.556 3.444 5 O -0.558 6.558 6 C -0.210 4.210 7 C 0.556 3.444 8 O -0.563 6.563 9 N -0.695 5.695 10 C 0.147 3.853 11 H 0.081 0.919 12 C -0.168 4.168 13 C 0.181 3.819 14 H 0.071 0.929 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.072 4.072 19 N -0.969 5.969 20 Si 0.973 3.027 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.267 1.267 24 C -0.116 4.116 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.131 4.131 28 C -0.115 4.115 29 C -0.118 4.118 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.410 0.590 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.122 0.878 48 H 0.115 0.885 49 H 0.112 0.888 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 -8.296 19.475 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.343 5.343 3 C -0.068 4.068 4 C 0.343 3.657 5 O -0.436 6.436 6 C -0.217 4.217 7 C 0.342 3.658 8 O -0.442 6.442 9 N -0.344 5.344 10 C 0.042 3.958 11 H 0.100 0.900 12 C -0.210 4.210 13 C 0.070 3.930 14 H 0.089 0.911 15 N -0.350 5.350 16 C -0.374 4.374 17 H 0.097 0.903 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.216 1.216 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.161 4.161 27 C -0.169 4.169 28 C -0.152 4.152 29 C -0.156 4.156 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.140 0.860 48 H 0.133 0.867 49 H 0.131 0.869 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.606 -8.104 19.221 24.373 hybrid contribution 0.383 0.835 -1.103 1.435 sum -12.224 -7.269 18.118 23.033 Atomic orbital electron populations 1.21871 0.77380 1.03872 1.03117 1.47810 1.08179 1.06339 1.72014 1.22000 0.98136 0.84781 1.01916 1.19239 0.87181 0.83520 0.75799 1.90687 1.69983 1.32135 1.50827 1.21345 0.92308 1.14047 0.93958 1.19411 0.80742 0.82023 0.83673 1.90724 1.38978 1.29332 1.85161 1.45845 1.51955 1.29150 1.07477 1.22051 0.95487 0.96873 0.81426 0.90040 1.24133 0.98828 1.00590 0.97466 1.20853 0.89839 0.90322 0.92022 0.91055 1.42212 1.29099 1.53073 1.10579 1.19660 1.07747 1.21055 0.88966 0.90286 1.25549 0.97611 1.01121 1.02157 1.69831 1.16406 1.38356 1.37293 0.85154 0.76287 0.78260 0.80134 1.21605 1.22371 1.19175 1.23481 0.97681 0.94704 0.96022 1.22536 0.98019 0.91119 1.01901 1.22687 0.96558 0.96306 1.00576 1.22626 0.95729 0.97824 1.00677 1.23209 1.02111 0.92227 0.97685 1.23208 1.02946 0.98211 0.91191 0.90817 0.88999 0.91660 0.94196 0.87612 0.90274 0.75293 0.88574 0.93678 0.79462 0.94052 0.88358 0.89971 0.91023 0.89753 0.93745 0.90290 0.85967 0.86684 0.86934 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.45 127.77 1.34 2.49 16 2 N -0.61 -11.79 3.27 -871.89 -2.85 -14.64 16 3 C 0.07 1.28 9.75 127.77 1.25 2.53 16 4 C 0.56 12.82 6.85 87.66 0.60 13.42 16 5 O -0.56 -15.47 16.47 -3.03 -0.05 -15.52 16 6 C -0.21 -4.50 1.21 -53.67 -0.06 -4.57 16 7 C 0.56 15.74 6.52 87.66 0.57 16.31 16 8 O -0.56 -20.10 16.04 -3.02 -0.05 -20.15 16 9 N -0.69 -19.12 5.06 -441.16 -2.23 -21.35 16 10 C 0.15 4.96 4.17 45.28 0.19 5.15 16 11 H 0.08 3.45 7.24 -2.39 -0.02 3.43 16 12 C -0.17 -5.94 7.69 31.23 0.24 -5.70 16 13 C 0.18 7.10 4.36 45.28 0.20 7.29 16 14 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 15 N -0.71 -36.03 4.86 -321.56 -1.56 -37.59 16 16 C -0.24 -13.43 9.97 84.03 0.84 -12.59 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 20 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C -0.12 -3.71 0.92 -52.31 -0.05 -3.76 16 25 C -0.10 -2.34 7.14 30.89 0.22 -2.12 16 26 C -0.12 -3.24 8.08 31.23 0.25 -2.99 16 27 C -0.13 -4.31 7.62 30.89 0.24 -4.08 16 28 C -0.11 -1.86 9.80 30.59 0.30 -1.56 16 29 C -0.12 -1.89 8.32 30.59 0.25 -1.63 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.06 1.16 7.36 -2.39 -0.02 1.14 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 1.15 8.03 -2.39 -0.02 1.14 16 35 H 0.08 1.41 5.83 -2.39 -0.01 1.40 16 36 H 0.41 9.76 7.47 -92.71 -0.69 9.07 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.37 20.73 7.61 -92.71 -0.71 20.02 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.10 1.96 7.24 -2.39 -0.02 1.95 16 42 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.04 1.80 7.58 -2.39 -0.02 1.79 16 46 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 47 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.11 1.96 7.89 -2.39 -0.02 1.94 16 50 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -72.49 406.09 1.95 -70.54 By element: Atomic # 1 Polarization: 46.00 SS G_CDS: -0.45 Total: 45.56 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 6.83 Total: 4.52 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -6.36 Total: -133.28 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -0.10 Total: -35.67 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -72.49 1.95 -70.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203596210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.438 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds