Wall clock time and date at job start Tue Mar 31 2020 18:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99998 * 2 1 4 4 O 1.21276 * 120.00050 * 354.87120 * 3 2 1 5 5 C 1.50701 * 119.99664 * 174.87221 * 3 2 1 6 6 C 1.50689 * 112.85413 * 65.48525 * 5 3 2 7 7 O 1.21283 * 120.00318 * 234.39050 * 6 5 3 8 8 N 1.34781 * 120.00076 * 54.39191 * 6 5 3 9 9 C 1.46504 * 120.00187 * 174.95029 * 8 6 5 10 10 H 1.09000 * 112.88175 * 26.83894 * 9 8 6 11 11 C 1.53949 * 113.66001 * 255.49315 * 9 8 6 12 12 C 1.53953 * 87.29073 * 220.70104 * 11 9 8 13 13 H 1.09000 * 113.66007 * 270.16966 * 12 11 9 14 14 N 1.46506 * 113.66082 * 139.21055 * 12 11 9 15 15 C 1.36937 * 119.99918 * 104.77750 * 14 12 11 16 16 H 1.07998 * 120.00024 * 359.72298 * 15 14 12 17 17 C 1.38809 * 119.99635 * 179.72290 * 15 14 12 18 18 N 1.31621 * 119.99998 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46925 * 90.00204 * 19 17 15 21 21 H 1.48503 * 109.46893 * 209.99753 * 19 17 15 22 22 H 1.48493 * 109.47152 * 329.99817 * 19 17 15 23 23 C 1.52901 * 86.78662 * 24.73518 * 12 11 9 24 24 C 1.52904 * 121.14333 * 209.38046 * 23 12 11 25 25 C 1.53956 * 86.78519 * 209.37390 * 24 23 12 26 26 C 1.52915 * 121.14077 * 100.81172 * 23 12 11 27 27 C 1.53790 * 113.68575 * 196.75588 * 5 3 2 28 28 C 1.53787 * 87.08097 * 89.12536 * 27 5 3 29 29 C 1.53782 * 87.08213 * 25.43266 * 28 27 5 30 30 H 1.09002 * 109.46670 * 299.99574 * 1 2 3 31 31 H 1.08990 * 109.47199 * 59.99716 * 1 2 3 32 32 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 33 33 H 0.97000 * 119.99999 * 180.02562 * 2 1 3 34 34 H 0.96998 * 119.99640 * 354.94130 * 8 6 5 35 35 H 1.08998 * 113.57797 * 106.10117 * 11 9 8 36 36 H 1.08998 * 113.58166 * 335.30433 * 11 9 8 37 37 H 0.96997 * 119.99328 * 284.50148 * 14 12 11 38 38 H 0.96997 * 120.00095 * 179.97438 * 18 17 15 39 39 H 1.08993 * 113.66232 * 323.84606 * 24 23 12 40 40 H 1.09004 * 113.66508 * 94.90533 * 24 23 12 41 41 H 1.09000 * 113.58319 * 270.13504 * 25 24 23 42 42 H 1.09002 * 113.65114 * 139.34211 * 25 24 23 43 43 H 1.09004 * 113.66204 * 265.10278 * 26 23 12 44 44 H 1.09003 * 113.65859 * 36.05911 * 26 23 12 45 45 H 1.09000 * 113.61009 * 203.67131 * 27 5 3 46 46 H 1.08992 * 113.61497 * 334.57596 * 27 5 3 47 47 H 1.08997 * 113.61304 * 270.88186 * 28 27 5 48 48 H 1.09001 * 113.68783 * 139.99162 * 28 27 5 49 49 H 1.09004 * 113.61346 * 220.02338 * 29 28 27 50 50 H 1.08994 * 113.61824 * 89.11316 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2154 -0.0939 5 6 3.6414 1.1697 0.1167 6 6 4.3216 0.5387 -1.0707 7 8 5.1119 -0.3666 -0.9065 8 7 4.0519 0.9802 -2.3152 9 6 4.7933 0.4441 -3.4594 10 1 5.1658 -0.5658 -3.2876 11 6 5.8571 1.4092 -4.0134 12 6 5.4177 0.9691 -5.4217 13 1 5.9668 0.1078 -5.8021 14 7 5.3454 2.0698 -6.3859 15 6 6.3199 2.2116 -7.3375 16 1 7.1440 1.5146 -7.3744 17 6 6.2483 3.2511 -8.2546 18 7 7.1851 3.3877 -9.1689 19 14 4.8231 4.4570 -8.1902 20 1 5.1767 5.5944 -7.3033 21 1 4.5418 4.9642 -9.5573 22 1 3.6179 3.7711 -7.6590 23 6 4.0692 0.6121 -4.7957 24 6 3.2019 -0.5080 -5.3713 25 6 1.9880 0.2797 -4.8458 26 6 2.8636 1.5432 -4.9301 27 6 4.2283 2.5361 0.5086 28 6 4.0622 2.0991 1.9737 29 6 4.1551 0.6492 1.4695 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.9500 -0.8400 -0.0004 34 1 3.3668 1.6529 -2.4532 35 1 6.8786 1.1210 -3.7654 36 1 5.6486 2.4574 -3.7993 37 1 4.6052 2.6957 -6.3526 38 1 7.1349 4.1139 -9.8100 39 1 3.2413 -0.5771 -6.4583 40 1 3.3458 -1.4698 -4.8788 41 1 1.7031 0.0139 -3.8278 42 1 1.1420 0.2890 -5.5330 43 1 2.7374 2.2201 -4.0851 44 1 2.8089 2.0518 -5.8926 45 1 5.2676 2.6675 0.2073 46 1 3.5960 3.3790 0.2301 47 1 3.0905 2.3526 2.3974 48 1 4.8933 2.3924 2.6151 49 1 3.4635 -0.0311 1.9666 50 1 5.1743 0.2648 1.4308 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203640553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:01 Heat of formation + Delta-G solvation = -13.234555 kcal Electronic energy + Delta-G solvation = -30736.408871 eV Core-core repulsion = 26765.214338 eV Total energy + Delta-G solvation = -3971.194533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49593 -41.65929 -39.83569 -38.09732 -36.52991 -35.76768 -35.65906 -34.18411 -32.39594 -29.51406 -27.43970 -26.86711 -26.52161 -26.19954 -25.43747 -23.83476 -22.69613 -21.94419 -21.78506 -20.47560 -20.04761 -19.66766 -18.41574 -17.67939 -17.30974 -17.10172 -16.70591 -16.64410 -16.39455 -15.95230 -15.76550 -15.70461 -15.43526 -14.86493 -14.69617 -14.40533 -14.01989 -13.87054 -13.70045 -13.55461 -13.49887 -13.27824 -13.20766 -13.01749 -12.92450 -12.89350 -12.49659 -12.41965 -12.27149 -12.04437 -12.01656 -11.87714 -11.50757 -11.44016 -11.30269 -11.16456 -11.06851 -10.74885 -10.68419 -10.22372 -10.03271 -9.26696 -8.03637 -5.36305 1.26162 1.34177 1.37944 1.39324 1.44871 2.02804 2.06853 2.46048 3.25652 3.30564 3.32699 3.37267 3.43587 3.57873 3.62787 3.69410 3.74856 3.80843 3.87983 3.93965 4.17009 4.30935 4.46034 4.48125 4.52785 4.61777 4.63353 4.67379 4.68629 4.77682 4.85742 4.91692 4.91783 4.93998 4.96614 4.98227 5.00587 5.05515 5.08967 5.22921 5.30838 5.33700 5.36092 5.49708 5.58811 5.77109 6.21455 6.31289 6.40372 6.99340 7.06110 7.06786 7.83181 8.02862 9.18065 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.003331 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.581472 B = 8404.410222 C = 8762.224380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.718 5.718 3 C 0.543 3.457 4 O -0.556 6.556 5 C -0.139 4.139 6 C 0.537 3.463 7 O -0.556 6.556 8 N -0.701 5.701 9 C 0.164 3.836 10 H 0.116 0.884 11 C -0.171 4.171 12 C 0.168 3.832 13 H 0.077 0.923 14 N -0.733 5.733 15 C -0.231 4.231 16 H 0.058 0.942 17 C -0.062 4.062 18 N -0.984 5.984 19 Si 0.949 3.051 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.250 1.250 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.131 4.131 29 C -0.097 4.097 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.413 0.587 34 H 0.405 0.595 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.367 0.633 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 -9.094 24.630 30.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.369 5.369 3 C 0.327 3.673 4 O -0.434 6.434 5 C -0.146 4.146 6 C 0.323 3.677 7 O -0.434 6.434 8 N -0.351 5.351 9 C 0.059 3.941 10 H 0.134 0.866 11 C -0.213 4.213 12 C 0.058 3.942 13 H 0.095 0.905 14 N -0.375 5.375 15 C -0.362 4.362 16 H 0.076 0.924 17 C -0.253 4.253 18 N -0.634 5.634 19 Si 0.776 3.224 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.174 1.174 23 C -0.118 4.118 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.168 4.168 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.249 0.751 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.110 0.890 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.558 -9.042 24.546 30.436 hybrid contribution -0.192 1.049 -0.906 1.399 sum -15.749 -7.993 23.640 29.509 Atomic orbital electron populations 1.21754 0.77777 1.04477 1.01999 1.45744 1.08814 1.08252 1.74086 1.19597 0.87808 0.84124 0.75729 1.90722 1.70005 1.32534 1.50169 1.22452 0.93046 1.02729 0.96342 1.20144 0.81811 0.81933 0.83811 1.90701 1.36904 1.30139 1.85705 1.45975 1.40057 1.43316 1.05735 1.21851 0.91793 0.98173 0.82321 0.86635 1.24128 0.98703 0.99573 0.98856 1.21391 0.95219 0.90378 0.87242 0.90520 1.42590 1.27058 1.32221 1.35581 1.19098 1.01600 1.09433 1.06053 0.92403 1.25454 1.00971 1.01131 0.97773 1.69877 1.37055 1.34914 1.21569 0.85512 0.80561 0.79552 0.76765 1.20698 1.22249 1.17426 1.23325 0.94097 0.99293 0.95038 1.22683 0.95317 0.97067 1.00618 1.22735 0.96505 0.94683 1.01782 1.22521 0.94736 0.96896 1.01674 1.22858 1.01400 0.93381 0.97446 1.22832 1.03508 0.95026 0.95481 1.22858 1.03159 0.97865 0.89594 0.92227 0.92815 0.87281 0.75119 0.75852 0.92203 0.90779 0.79845 0.93378 0.90559 0.90170 0.89397 0.90610 0.91302 0.90853 0.88850 0.90015 0.89696 0.88752 0.89046 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.71 127.77 1.37 2.19 16 2 N -0.72 -9.36 5.71 -484.53 -2.77 -12.12 16 3 C 0.54 10.27 6.12 87.66 0.54 10.80 16 4 O -0.56 -14.08 15.96 -3.02 -0.05 -14.13 16 5 C -0.14 -2.57 1.07 -53.15 -0.06 -2.63 16 6 C 0.54 12.41 6.85 87.65 0.60 13.01 16 7 O -0.56 -15.79 15.57 -3.04 -0.05 -15.83 16 8 N -0.70 -16.29 5.25 -441.15 -2.31 -18.60 16 9 C 0.16 4.40 4.11 45.28 0.19 4.59 16 10 H 0.12 3.18 7.49 -2.39 -0.02 3.16 16 11 C -0.17 -5.64 7.68 31.23 0.24 -5.40 16 12 C 0.17 6.19 4.35 45.28 0.20 6.39 16 13 H 0.08 2.98 8.12 -2.39 -0.02 2.96 16 14 N -0.73 -33.46 5.14 -321.56 -1.65 -35.12 16 15 C -0.23 -13.07 10.46 84.03 0.88 -12.19 16 16 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 17 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 18 N -0.98 -63.27 13.97 21.65 0.30 -62.97 16 19 Si 0.95 45.39 27.74 68.60 1.90 47.29 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 22 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 23 C -0.12 -3.23 1.06 -52.32 -0.06 -3.29 16 24 C -0.12 -2.91 7.84 30.89 0.24 -2.67 16 25 C -0.12 -2.53 8.08 31.23 0.25 -2.27 16 26 C -0.12 -3.18 6.77 30.89 0.21 -2.97 16 27 C -0.11 -2.05 7.09 31.13 0.22 -1.83 16 28 C -0.13 -1.81 7.81 31.12 0.24 -1.57 16 29 C -0.10 -1.42 6.95 31.12 0.22 -1.20 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.41 4.11 8.83 -92.71 -0.82 3.29 16 34 H 0.40 9.07 6.43 -92.71 -0.60 8.48 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.37 16.09 3.98 -92.71 -0.37 15.72 16 38 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.67 6.43 -2.38 -0.02 1.66 16 44 H 0.07 2.26 6.96 -2.39 -0.02 2.24 16 45 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 46 H 0.08 1.66 7.35 -2.39 -0.02 1.65 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.03 8.09 -2.38 -0.02 1.01 16 50 H 0.10 1.65 7.51 -2.39 -0.02 1.64 16 Total: -1.00 -72.87 397.72 0.25 -72.62 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: -0.87 Total: 41.09 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.75 Total: -2.23 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -6.43 Total: -128.81 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.10 Total: -29.96 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -72.87 0.25 -72.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.387 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds