Wall clock time and date at job start Tue Mar 31 2020 18:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99504 * 2 1 4 4 O 1.21275 * 120.00281 * 355.03704 * 3 2 1 5 5 C 1.50701 * 119.99751 * 175.04298 * 3 2 1 6 6 C 1.50697 * 112.85006 * 294.16017 * 5 3 2 7 7 O 1.21280 * 120.00196 * 123.62342 * 6 5 3 8 8 N 1.34780 * 119.99636 * 303.62045 * 6 5 3 9 9 C 1.46505 * 119.99565 * 174.89246 * 8 6 5 10 10 H 1.08999 * 112.95208 * 336.40270 * 9 8 6 11 11 C 1.53946 * 113.66109 * 107.81384 * 9 8 6 12 12 C 1.53954 * 87.29359 * 139.20230 * 11 9 8 13 13 H 1.09003 * 113.66548 * 220.79491 * 12 11 9 14 14 N 1.46504 * 113.66247 * 89.74044 * 12 11 9 15 15 C 1.36937 * 120.00180 * 107.81032 * 14 12 11 16 16 H 1.08003 * 120.00000 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99624 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99404 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47655 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47169 * 120.00156 * 19 17 15 22 22 H 1.48500 * 109.46972 * 239.99980 * 19 17 15 23 23 C 1.52909 * 86.78301 * 335.26507 * 12 11 9 24 24 C 1.52915 * 121.13604 * 150.61665 * 23 12 11 25 25 C 1.53948 * 86.78056 * 100.81779 * 24 23 12 26 26 C 1.52903 * 121.13743 * 259.17841 * 23 12 11 27 27 C 1.53780 * 113.61584 * 65.35509 * 5 3 2 28 28 C 1.53961 * 87.01986 * 89.22893 * 27 5 3 29 29 C 1.53781 * 87.10958 * 25.36324 * 28 27 5 30 30 H 1.08998 * 109.47420 * 299.99792 * 1 2 3 31 31 H 1.09004 * 109.47098 * 60.00721 * 1 2 3 32 32 H 1.09004 * 109.46504 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00144 * 179.97438 * 2 1 3 34 34 H 0.96994 * 120.00618 * 354.89583 * 8 6 5 35 35 H 1.08997 * 113.57981 * 24.60299 * 11 9 8 36 36 H 1.08998 * 113.58060 * 253.80466 * 11 9 8 37 37 H 0.97004 * 119.99507 * 287.81259 * 14 12 11 38 38 H 0.97003 * 119.99517 * 180.02562 * 18 17 15 39 39 H 1.09003 * 113.66053 * 346.34822 * 24 23 12 40 40 H 1.08995 * 113.74444 * 215.30082 * 24 23 12 41 41 H 1.09007 * 113.57987 * 139.33298 * 25 24 23 42 42 H 1.08995 * 113.58627 * 270.12924 * 25 24 23 43 43 H 1.09004 * 113.66455 * 144.70878 * 26 23 12 44 44 H 1.09002 * 113.66206 * 13.65024 * 26 23 12 45 45 H 1.08999 * 113.61601 * 203.74849 * 27 5 3 46 46 H 1.08999 * 113.61764 * 334.65339 * 27 5 3 47 47 H 1.09002 * 113.53394 * 270.81339 * 28 27 5 48 48 H 1.08996 * 113.66484 * 139.93538 * 28 27 5 49 49 H 1.08998 * 113.61231 * 220.09296 * 29 28 27 50 50 H 1.09002 * 113.69073 * 89.19813 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5358 2.2155 -0.0909 5 6 3.6416 1.1698 0.1128 6 6 4.1294 0.6576 1.4435 7 8 4.9013 -0.2768 1.4876 8 7 3.7080 1.2381 2.5845 9 6 4.0923 0.6717 3.8798 10 1 4.3467 -0.3866 3.8223 11 6 5.1309 1.5164 4.6398 12 6 4.3296 1.2175 5.9199 13 1 4.2332 2.0749 6.5860 14 7 4.7612 0.0013 6.6133 15 6 5.4477 0.0936 7.7946 16 1 5.6705 1.0630 8.2154 17 6 5.8561 -1.0589 8.4517 18 7 5.5842 -2.2402 7.9392 19 14 6.7919 -0.9330 10.0636 20 1 6.9695 0.4970 10.4225 21 1 6.0277 -1.6214 11.1347 22 1 8.1229 -1.5744 9.9146 23 6 3.1187 1.0083 5.0099 24 6 1.9948 0.0468 5.3978 25 6 1.1982 1.2905 5.8320 26 6 2.0583 2.0970 4.8420 27 6 4.3508 0.5285 -1.0916 28 6 4.3457 1.9264 -1.7368 29 6 4.2889 2.4989 -0.3106 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.1502 2.0308 2.5481 35 1 5.1265 2.5695 4.3586 36 1 6.1306 1.0820 4.6398 37 1 4.5608 -0.8694 6.2355 38 1 5.8693 -3.0455 8.3987 39 1 2.2526 -0.6175 6.2228 40 1 1.5559 -0.4801 4.5506 41 1 0.1434 1.2496 5.5601 42 1 1.3568 1.5682 6.8739 43 1 1.6381 2.1472 3.8374 44 1 2.3668 3.0706 5.2228 45 1 5.3496 0.1567 -0.8630 46 1 3.7380 -0.2004 -1.6220 47 1 3.4514 2.1309 -2.3253 48 1 5.2670 2.1667 -2.2674 49 1 3.6261 3.3585 -0.2114 50 1 5.2702 2.6676 0.1331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203640554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:05 Heat of formation + Delta-G solvation = 5.150231 kcal Electronic energy + Delta-G solvation = -30612.938773 eV Core-core repulsion = 26642.541464 eV Total energy + Delta-G solvation = -3970.397309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43241 -40.33593 -38.74546 -37.17992 -35.06498 -34.89752 -34.09941 -32.38949 -29.79185 -28.57566 -26.54343 -25.73553 -25.53258 -24.38696 -24.17917 -22.70002 -21.85952 -20.87805 -20.36706 -19.57670 -18.47485 -17.57387 -16.99020 -16.59239 -16.30787 -15.98613 -15.53598 -15.17304 -15.14018 -14.88343 -14.58409 -14.38542 -14.02300 -13.60155 -13.13531 -13.07891 -12.77456 -12.70186 -12.62621 -12.54621 -12.25891 -12.17267 -11.97094 -11.63345 -11.54455 -11.38670 -11.28041 -10.91645 -10.85766 -10.75232 -10.71701 -10.23291 -10.14802 -10.05504 -9.86564 -9.77069 -9.56458 -9.47067 -9.40299 -8.88754 -8.64121 -7.01767 -5.81139 -3.10732 2.16850 2.52388 2.86280 3.22687 3.41483 3.47376 3.49541 4.15210 4.21566 4.36461 4.47656 4.49901 4.64427 4.76521 4.89832 4.92544 4.99103 5.11265 5.17850 5.20003 5.32302 5.36020 5.42885 5.48220 5.52412 5.61615 5.65154 5.70231 5.73381 5.81289 5.91804 5.94928 5.98633 6.02698 6.03576 6.05925 6.12759 6.20217 6.41563 6.55591 6.62156 6.69250 6.77096 6.86222 7.05492 7.09035 7.59784 7.68713 7.83115 8.24119 8.36947 9.48356 10.04085 10.38780 11.40960 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.003137 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.496719 B = 8923.389570 C = 9604.620234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.728 5.728 3 C 0.546 3.454 4 O -0.528 6.528 5 C -0.141 4.141 6 C 0.530 3.470 7 O -0.527 6.527 8 N -0.708 5.708 9 C 0.138 3.862 10 H 0.114 0.886 11 C -0.181 4.181 12 C 0.197 3.803 13 H 0.069 0.931 14 N -0.700 5.700 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.105 4.105 28 C -0.141 4.141 29 C -0.108 4.108 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.406 0.594 34 H 0.398 0.602 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 7.503 -18.750 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.379 5.379 3 C 0.331 3.669 4 O -0.404 6.404 5 C -0.147 4.147 6 C 0.314 3.686 7 O -0.403 6.403 8 N -0.357 5.357 9 C 0.034 3.966 10 H 0.131 0.869 11 C -0.224 4.224 12 C 0.084 3.916 13 H 0.087 0.913 14 N -0.338 5.338 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.126 4.126 24 C -0.162 4.162 25 C -0.170 4.170 26 C -0.154 4.154 27 C -0.143 4.143 28 C -0.178 4.178 29 C -0.146 4.146 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.240 0.760 34 H 0.233 0.767 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.125 0.875 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.457 7.577 -18.546 22.155 hybrid contribution 0.364 -0.429 0.706 0.902 sum -9.093 7.149 -17.840 21.262 Atomic orbital electron populations 1.21587 0.78994 1.02601 1.02448 1.45733 1.08022 1.08777 1.75413 1.19543 0.87815 0.83860 0.75720 1.90706 1.69535 1.31326 1.48850 1.22409 0.93489 1.02874 0.95974 1.19788 0.81271 0.82944 0.84562 1.90743 1.34211 1.28416 1.86915 1.46103 1.52698 1.31072 1.05843 1.22464 0.96165 0.99051 0.78876 0.86867 1.24283 0.99753 0.98619 0.99700 1.20639 0.89357 0.91428 0.90225 0.91332 1.42110 1.65324 1.02183 1.24140 1.19301 1.27770 0.92780 0.97608 0.90923 1.24754 1.01446 0.95224 0.99176 1.69674 1.51313 0.96674 1.39998 0.86116 0.79347 0.77259 0.83429 1.20499 1.21854 1.21826 1.23614 0.94019 0.97630 0.97294 1.22612 0.95728 0.96572 1.01266 1.22733 0.97600 0.97186 0.99488 1.22530 0.96383 0.97324 0.99142 1.22894 1.01942 0.96965 0.92451 1.22903 1.02869 0.95715 0.96362 1.22814 1.01155 0.94566 0.96068 0.91967 0.92016 0.90387 0.76012 0.76712 0.91200 0.90849 0.77888 0.93445 0.89862 0.91297 0.92323 0.89990 0.90844 0.91373 0.87545 0.90759 0.89852 0.90327 0.89104 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.71 59.85 0.64 1.30 16 2 N -0.73 -6.69 5.71 -67.07 -0.38 -7.08 16 3 C 0.55 6.18 6.32 -10.98 -0.07 6.11 16 4 O -0.53 -7.26 15.95 5.56 0.09 -7.17 16 5 C -0.14 -1.55 1.04 -156.00 -0.16 -1.71 16 6 C 0.53 7.48 6.83 -10.98 -0.08 7.40 16 7 O -0.53 -9.30 15.62 5.56 0.09 -9.22 16 8 N -0.71 -9.75 5.16 -53.37 -0.28 -10.03 16 9 C 0.14 2.29 4.00 -67.48 -0.27 2.02 16 10 H 0.11 2.23 7.53 -51.93 -0.39 1.84 16 11 C -0.18 -3.20 7.68 -25.75 -0.20 -3.40 16 12 C 0.20 3.80 4.36 -67.48 -0.29 3.51 16 13 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 14 N -0.70 -16.98 4.85 -52.98 -0.26 -17.23 16 15 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 19 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 C -0.12 -1.95 0.92 -154.71 -0.14 -2.09 16 24 C -0.12 -1.98 7.62 -26.28 -0.20 -2.18 16 25 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 26 C -0.12 -1.52 7.15 -26.28 -0.19 -1.71 16 27 C -0.10 -0.99 6.95 -25.82 -0.18 -1.17 16 28 C -0.14 -1.18 7.81 -25.82 -0.20 -1.38 16 29 C -0.11 -1.06 7.09 -25.92 -0.18 -1.24 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.41 3.28 8.83 -40.82 -0.36 2.92 16 34 H 0.40 4.94 7.00 -40.82 -0.29 4.66 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.39 10.08 7.62 -40.82 -0.31 9.77 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.89 7.03 -51.93 -0.36 0.52 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.11 1.11 7.54 -51.93 -0.39 0.72 16 46 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.92 7.34 -51.93 -0.38 0.54 16 50 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -32.00 403.71 -9.27 -41.27 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -8.34 Total: 16.88 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -1.98 Total: -3.70 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.19 Total: -61.24 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.18 Total: -16.38 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.00 -9.27 -41.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.415 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds