Wall clock time and date at job start Tue Mar 31 2020 18:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99504 * 2 1 4 4 O 1.21275 * 120.00281 * 355.03704 * 3 2 1 5 5 C 1.50701 * 119.99751 * 175.04298 * 3 2 1 6 6 C 1.50697 * 112.85006 * 294.16017 * 5 3 2 7 7 O 1.21280 * 120.00196 * 123.62342 * 6 5 3 8 8 N 1.34780 * 119.99636 * 303.62045 * 6 5 3 9 9 C 1.46505 * 119.99565 * 174.89246 * 8 6 5 10 10 H 1.08999 * 112.95208 * 336.40270 * 9 8 6 11 11 C 1.53946 * 113.66109 * 107.81384 * 9 8 6 12 12 C 1.53954 * 87.29359 * 139.20230 * 11 9 8 13 13 H 1.09003 * 113.66548 * 220.79491 * 12 11 9 14 14 N 1.46504 * 113.66247 * 89.74044 * 12 11 9 15 15 C 1.36937 * 120.00180 * 107.81032 * 14 12 11 16 16 H 1.08003 * 120.00000 * 0.02562 * 15 14 12 17 17 C 1.38813 * 119.99624 * 179.97438 * 15 14 12 18 18 N 1.31613 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99404 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47655 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47169 * 120.00156 * 19 17 15 22 22 H 1.48500 * 109.46972 * 239.99980 * 19 17 15 23 23 C 1.52909 * 86.78301 * 335.26507 * 12 11 9 24 24 C 1.52915 * 121.13604 * 150.61665 * 23 12 11 25 25 C 1.53948 * 86.78056 * 100.81779 * 24 23 12 26 26 C 1.52903 * 121.13743 * 259.17841 * 23 12 11 27 27 C 1.53780 * 113.61584 * 65.35509 * 5 3 2 28 28 C 1.53961 * 87.01986 * 89.22893 * 27 5 3 29 29 C 1.53781 * 87.10958 * 25.36324 * 28 27 5 30 30 H 1.08998 * 109.47420 * 299.99792 * 1 2 3 31 31 H 1.09004 * 109.47098 * 60.00721 * 1 2 3 32 32 H 1.09004 * 109.46504 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00144 * 179.97438 * 2 1 3 34 34 H 0.96994 * 120.00618 * 354.89583 * 8 6 5 35 35 H 1.08997 * 113.57981 * 24.60299 * 11 9 8 36 36 H 1.08998 * 113.58060 * 253.80466 * 11 9 8 37 37 H 0.97004 * 119.99507 * 287.81259 * 14 12 11 38 38 H 0.97003 * 119.99517 * 180.02562 * 18 17 15 39 39 H 1.09003 * 113.66053 * 346.34822 * 24 23 12 40 40 H 1.08995 * 113.74444 * 215.30082 * 24 23 12 41 41 H 1.09007 * 113.57987 * 139.33298 * 25 24 23 42 42 H 1.08995 * 113.58627 * 270.12924 * 25 24 23 43 43 H 1.09004 * 113.66455 * 144.70878 * 26 23 12 44 44 H 1.09002 * 113.66206 * 13.65024 * 26 23 12 45 45 H 1.08999 * 113.61601 * 203.74849 * 27 5 3 46 46 H 1.08999 * 113.61764 * 334.65339 * 27 5 3 47 47 H 1.09002 * 113.53394 * 270.81339 * 28 27 5 48 48 H 1.08996 * 113.66484 * 139.93538 * 28 27 5 49 49 H 1.08998 * 113.61231 * 220.09296 * 29 28 27 50 50 H 1.09002 * 113.69073 * 89.19813 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5358 2.2155 -0.0909 5 6 3.6416 1.1698 0.1128 6 6 4.1294 0.6576 1.4435 7 8 4.9013 -0.2768 1.4876 8 7 3.7080 1.2381 2.5845 9 6 4.0923 0.6717 3.8798 10 1 4.3467 -0.3866 3.8223 11 6 5.1309 1.5164 4.6398 12 6 4.3296 1.2175 5.9199 13 1 4.2332 2.0749 6.5860 14 7 4.7612 0.0013 6.6133 15 6 5.4477 0.0936 7.7946 16 1 5.6705 1.0630 8.2154 17 6 5.8561 -1.0589 8.4517 18 7 5.5842 -2.2402 7.9392 19 14 6.7919 -0.9330 10.0636 20 1 6.9695 0.4970 10.4225 21 1 6.0277 -1.6214 11.1347 22 1 8.1229 -1.5744 9.9146 23 6 3.1187 1.0083 5.0099 24 6 1.9948 0.0468 5.3978 25 6 1.1982 1.2905 5.8320 26 6 2.0583 2.0970 4.8420 27 6 4.3508 0.5285 -1.0916 28 6 4.3457 1.9264 -1.7368 29 6 4.2889 2.4989 -0.3106 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 3.1502 2.0308 2.5481 35 1 5.1265 2.5695 4.3586 36 1 6.1306 1.0820 4.6398 37 1 4.5608 -0.8694 6.2355 38 1 5.8693 -3.0455 8.3987 39 1 2.2526 -0.6175 6.2228 40 1 1.5559 -0.4801 4.5506 41 1 0.1434 1.2496 5.5601 42 1 1.3568 1.5682 6.8739 43 1 1.6381 2.1472 3.8374 44 1 2.3668 3.0706 5.2228 45 1 5.3496 0.1567 -0.8630 46 1 3.7380 -0.2004 -1.6220 47 1 3.4514 2.1309 -2.3253 48 1 5.2670 2.1667 -2.2674 49 1 3.6261 3.3585 -0.2114 50 1 5.2702 2.6676 0.1331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203640554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:04 Heat of formation + Delta-G solvation = -17.018953 kcal Electronic energy + Delta-G solvation = -30613.900101 eV Core-core repulsion = 26642.541464 eV Total energy + Delta-G solvation = -3971.358637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44016 -41.59374 -39.83515 -38.08460 -36.52244 -35.74758 -35.63482 -34.05857 -31.63446 -29.44576 -27.43187 -26.79817 -26.49963 -26.08180 -25.51951 -24.25493 -22.69693 -22.00465 -21.72813 -20.40628 -19.67201 -19.30345 -18.49088 -17.57562 -17.25592 -17.08311 -16.70216 -16.55139 -16.28241 -15.94120 -15.81543 -15.56504 -15.51027 -14.97227 -14.50227 -14.28578 -13.94719 -13.84621 -13.60115 -13.52183 -13.34684 -13.26023 -13.14138 -12.99642 -12.85946 -12.71223 -12.61675 -12.47146 -12.17323 -12.02500 -11.98246 -11.80614 -11.48837 -11.35750 -11.27572 -11.07902 -10.94321 -10.79327 -10.63699 -10.21898 -9.94278 -9.02249 -7.95721 -5.24716 1.22336 1.45879 1.46949 1.47736 1.57579 2.06791 2.11015 2.53965 3.31111 3.35532 3.37703 3.39913 3.50657 3.58848 3.66442 3.75107 3.76678 3.92821 3.99369 4.15932 4.19059 4.32175 4.45215 4.53882 4.60689 4.61287 4.63710 4.74583 4.78166 4.78450 4.84748 4.91466 4.92563 4.97650 5.01149 5.02245 5.08451 5.09345 5.22601 5.27082 5.30475 5.33848 5.39062 5.52405 5.56029 5.68480 6.25956 6.30954 6.45227 6.99969 7.11241 7.31961 8.06711 8.29789 9.27702 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016433 B = 0.003137 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.496719 B = 8923.389570 C = 9604.620234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.722 5.722 3 C 0.547 3.453 4 O -0.552 6.552 5 C -0.138 4.138 6 C 0.531 3.469 7 O -0.566 6.566 8 N -0.696 5.696 9 C 0.149 3.851 10 H 0.076 0.924 11 C -0.171 4.171 12 C 0.180 3.820 13 H 0.072 0.928 14 N -0.713 5.713 15 C -0.241 4.241 16 H 0.079 0.921 17 C -0.073 4.073 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.293 1.293 22 H -0.297 1.297 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.098 4.098 27 C -0.104 4.104 28 C -0.129 4.129 29 C -0.108 4.108 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.411 0.589 34 H 0.409 0.591 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.002 9.574 -20.075 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.373 5.373 3 C 0.332 3.668 4 O -0.430 6.430 5 C -0.145 4.145 6 C 0.317 3.683 7 O -0.445 6.445 8 N -0.346 5.346 9 C 0.044 3.956 10 H 0.094 0.906 11 C -0.213 4.213 12 C 0.069 3.931 13 H 0.090 0.910 14 N -0.350 5.350 15 C -0.372 4.372 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.188 1.188 21 H -0.221 1.221 22 H -0.224 1.224 23 C -0.115 4.115 24 C -0.168 4.168 25 C -0.161 4.161 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.166 4.166 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.246 0.754 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.857 9.709 -19.895 24.657 hybrid contribution 0.767 -1.070 1.064 1.692 sum -10.091 8.639 -18.831 23.045 Atomic orbital electron populations 1.21750 0.77753 1.04337 1.02123 1.45798 1.08914 1.08444 1.74126 1.19508 0.87649 0.84049 0.75643 1.90696 1.69836 1.32165 1.50293 1.22445 0.93817 1.04017 0.94220 1.20319 0.80364 0.82092 0.85502 1.90734 1.36018 1.30176 1.87563 1.45921 1.52599 1.31271 1.04834 1.21991 0.96158 0.96969 0.80532 0.90578 1.24155 0.97978 1.00249 0.98884 1.20876 0.91694 0.89704 0.90820 0.90988 1.42219 1.65596 1.03226 1.23943 1.19697 1.26529 0.92895 0.98097 0.90264 1.25544 1.03306 0.95037 1.02652 1.69835 1.53306 0.97189 1.41562 0.85092 0.77478 0.77786 0.79509 1.18819 1.22071 1.22401 1.23431 0.93390 0.99525 0.95145 1.22629 0.96642 0.96976 1.00513 1.22686 0.98938 0.95307 0.99214 1.22518 0.94122 0.96828 1.00115 1.22913 1.01350 0.98083 0.91872 1.22855 1.03912 0.94219 0.95593 1.22863 1.00941 0.93774 0.97060 0.92673 0.91902 0.87728 0.75380 0.75375 0.88232 0.94035 0.79470 0.94084 0.93660 0.90132 0.89829 0.90924 0.88816 0.89763 0.88703 0.89347 0.89448 0.88656 0.89149 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.71 127.77 1.37 2.43 16 2 N -0.72 -11.83 5.71 -484.51 -2.77 -14.59 16 3 C 0.55 11.31 6.32 87.66 0.55 11.86 16 4 O -0.55 -13.96 15.95 -3.01 -0.05 -14.00 16 5 C -0.14 -2.85 1.04 -53.15 -0.06 -2.90 16 6 C 0.53 14.67 6.83 87.66 0.60 15.27 16 7 O -0.57 -20.35 15.62 -3.03 -0.05 -20.40 16 8 N -0.70 -18.40 5.16 -441.15 -2.28 -20.67 16 9 C 0.15 4.94 4.00 45.28 0.18 5.12 16 10 H 0.08 3.16 7.53 -2.39 -0.02 3.15 16 11 C -0.17 -6.02 7.68 31.23 0.24 -5.78 16 12 C 0.18 6.99 4.36 45.28 0.20 7.19 16 13 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 14 N -0.71 -35.82 4.85 -321.54 -1.56 -37.38 16 15 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 19 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 C -0.11 -3.49 0.92 -52.31 -0.05 -3.54 16 24 C -0.13 -4.11 7.62 30.89 0.24 -3.88 16 25 C -0.12 -3.14 8.08 31.23 0.25 -2.89 16 26 C -0.10 -2.27 7.15 30.88 0.22 -2.05 16 27 C -0.10 -1.81 6.95 31.18 0.22 -1.59 16 28 C -0.13 -1.85 7.81 31.18 0.24 -1.60 16 29 C -0.11 -1.92 7.09 31.12 0.22 -1.70 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.41 5.92 8.83 -92.71 -0.82 5.10 16 34 H 0.41 9.15 7.00 -92.71 -0.65 8.50 16 35 H 0.10 2.90 8.14 -2.39 -0.02 2.89 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.37 20.55 7.62 -92.71 -0.71 19.84 16 38 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.04 1.78 7.58 -2.39 -0.02 1.77 16 40 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 1.87 7.03 -2.38 -0.02 1.85 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.09 1.91 7.54 -2.39 -0.02 1.89 16 46 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 47 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 1.64 7.34 -2.39 -0.02 1.63 16 50 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -71.81 403.71 0.14 -71.68 By element: Atomic # 1 Polarization: 48.00 SS G_CDS: -1.21 Total: 46.79 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 5.73 Total: -0.25 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -6.32 Total: -132.17 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.10 Total: -34.41 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.81 0.14 -71.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.659 kcal (2) G-P(sol) polarization free energy of solvation -71.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds