Wall clock time and date at job start Tue Mar 31 2020 18:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00143 * 2 1 4 4 O 1.21277 * 119.99683 * 354.98139 * 3 2 1 5 5 C 1.50696 * 119.99842 * 174.98306 * 3 2 1 6 6 C 1.50694 * 112.85122 * 294.18508 * 5 3 2 7 7 O 1.21282 * 120.00110 * 123.82990 * 6 5 3 8 8 N 1.34773 * 120.00104 * 303.82908 * 6 5 3 9 9 C 1.46506 * 120.00243 * 174.94737 * 8 6 5 10 10 H 1.08997 * 112.88205 * 23.65910 * 9 8 6 11 11 C 1.53951 * 113.66174 * 252.18786 * 9 8 6 12 12 C 1.53945 * 87.29663 * 270.25934 * 11 9 8 13 13 H 1.09002 * 113.66666 * 89.73733 * 12 11 9 14 14 N 1.46501 * 113.66639 * 220.79920 * 12 11 9 15 15 C 1.36932 * 119.99837 * 252.19128 * 14 12 11 16 16 H 1.08001 * 120.00365 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00241 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99403 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47423 * 59.99995 * 19 17 15 21 21 H 1.48502 * 109.47526 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47371 * 299.99837 * 19 17 15 23 23 C 1.52909 * 86.78533 * 335.26938 * 12 11 9 24 24 C 1.52918 * 121.13674 * 259.18297 * 23 12 11 25 25 C 1.53949 * 86.77992 * 209.37578 * 24 23 12 26 26 C 1.52906 * 121.14229 * 150.61462 * 23 12 11 27 27 C 1.53779 * 113.61615 * 65.38342 * 5 3 2 28 28 C 1.53960 * 87.02015 * 89.22631 * 27 5 3 29 29 C 1.53782 * 87.10939 * 25.36295 * 28 27 5 30 30 H 1.09004 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47260 * 299.99925 * 1 2 3 32 32 H 1.09002 * 109.47111 * 60.00149 * 1 2 3 33 33 H 0.97006 * 119.99639 * 179.97438 * 2 1 3 34 34 H 0.97004 * 120.00152 * 354.95000 * 8 6 5 35 35 H 1.09008 * 113.57347 * 155.65355 * 11 9 8 36 36 H 1.08997 * 113.58312 * 24.86609 * 11 9 8 37 37 H 0.96998 * 120.00296 * 72.18185 * 14 12 11 38 38 H 0.97004 * 119.99580 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.66024 * 323.84977 * 24 23 12 40 40 H 1.08994 * 113.66218 * 94.90657 * 24 23 12 41 41 H 1.09003 * 113.58191 * 270.12994 * 25 24 23 42 42 H 1.08998 * 113.64823 * 139.34667 * 25 24 23 43 43 H 1.08995 * 113.66306 * 265.09291 * 26 23 12 44 44 H 1.09001 * 113.65989 * 36.15589 * 26 23 12 45 45 H 1.08993 * 113.61652 * 203.74542 * 27 5 3 46 46 H 1.09004 * 113.61301 * 334.65093 * 27 5 3 47 47 H 1.09000 * 113.53554 * 270.81518 * 28 27 5 48 48 H 1.08997 * 113.74194 * 139.94469 * 28 27 5 49 49 H 1.09001 * 113.61338 * 220.08846 * 29 28 27 50 50 H 1.08997 * 113.69082 * 89.20020 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 -0.0919 5 6 3.6415 1.1696 0.1141 6 6 4.1281 0.6576 1.4453 7 8 4.9028 -0.2745 1.4900 8 7 3.7025 1.2354 2.5860 9 6 4.0869 0.6695 3.8816 10 1 5.0014 0.0786 3.8314 11 6 2.9317 -0.0366 4.6145 12 6 2.6098 1.3219 5.2633 13 1 1.9087 1.9264 4.6878 14 7 2.2522 1.2267 6.6808 15 6 0.9548 1.4193 7.0740 16 1 0.1951 1.6418 6.3392 17 6 0.6158 1.3285 8.4171 18 7 1.5414 1.0568 9.3124 19 14 -1.1540 1.5920 8.9535 20 1 -2.0259 0.5865 8.2948 21 1 -1.2519 1.4427 10.4278 22 1 -1.5912 2.9568 8.5647 23 6 4.0752 1.6866 5.0233 24 6 5.1026 1.6179 6.1539 25 6 5.8514 2.7485 5.4252 26 6 4.5019 3.1370 4.7944 27 6 4.3518 0.5283 -1.0896 28 6 4.3473 1.9261 -1.7348 29 6 4.2892 2.4987 -0.3088 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 3.1416 2.0260 2.5493 35 1 3.2643 -0.7920 5.3266 36 1 2.1486 -0.3981 3.9481 37 1 2.9344 1.0270 7.3407 38 1 1.3046 0.9938 10.2510 39 1 4.7045 1.9118 7.1251 40 1 5.6541 0.6784 6.1872 41 1 6.5840 2.3907 4.7016 42 1 6.2547 3.5082 6.0947 43 1 4.5736 3.4110 3.7419 44 1 3.9351 3.8579 5.3836 45 1 5.3504 0.1565 -0.8601 46 1 3.7393 -0.2006 -1.6204 47 1 3.4535 2.1306 -2.3242 48 1 5.2684 2.1676 -2.2651 49 1 3.6263 3.3584 -0.2101 50 1 5.2700 2.6674 0.1358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203640555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:08 Heat of formation + Delta-G solvation = 5.481742 kcal Electronic energy + Delta-G solvation = -30633.549251 eV Core-core repulsion = 26663.166318 eV Total energy + Delta-G solvation = -3970.382933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48021 -40.35864 -38.75949 -37.21859 -35.09045 -34.85509 -34.10410 -32.32652 -29.93399 -28.55793 -26.50243 -25.75728 -25.47593 -24.63829 -24.05392 -22.49402 -21.85957 -21.18698 -20.21505 -19.57192 -18.52386 -17.64077 -17.14355 -16.52948 -16.21786 -15.98033 -15.46091 -15.31776 -15.12829 -14.86715 -14.55271 -14.43241 -13.90050 -13.69368 -13.42189 -13.05423 -12.80408 -12.68875 -12.58197 -12.48640 -12.30926 -12.09577 -11.84978 -11.69207 -11.58654 -11.40524 -11.30558 -10.93342 -10.84641 -10.75147 -10.67568 -10.24245 -10.20914 -10.13328 -9.87850 -9.78497 -9.61956 -9.39890 -9.36958 -8.84200 -8.78256 -6.97779 -5.80805 -3.09145 2.17372 2.45268 2.87577 3.07851 3.41647 3.46560 3.47127 4.11088 4.17390 4.36622 4.44633 4.54890 4.57793 4.73832 4.96551 4.97795 5.04660 5.10014 5.20932 5.23397 5.29408 5.32229 5.42261 5.47399 5.57572 5.59485 5.63810 5.68181 5.71068 5.81378 5.91057 6.00065 6.02313 6.06285 6.08455 6.10864 6.19626 6.22072 6.35487 6.40467 6.47552 6.59126 6.77413 6.92742 7.02126 7.12911 7.50405 7.66841 7.87030 8.12730 8.38091 9.49583 10.07117 10.42229 11.41453 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003566 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.087123 B = 7849.237022 C = 9233.447410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.727 5.727 3 C 0.544 3.456 4 O -0.525 6.525 5 C -0.139 4.139 6 C 0.537 3.463 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.140 3.860 10 H 0.098 0.902 11 C -0.173 4.173 12 C 0.181 3.819 13 H 0.073 0.927 14 N -0.707 5.707 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.125 4.125 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.104 4.104 28 C -0.141 4.141 29 C -0.109 4.109 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.405 0.595 34 H 0.403 0.597 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.517 -0.267 -21.181 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.379 5.379 3 C 0.328 3.672 4 O -0.400 6.400 5 C -0.146 4.146 6 C 0.321 3.679 7 O -0.410 6.410 8 N -0.345 5.345 9 C 0.035 3.965 10 H 0.116 0.884 11 C -0.216 4.216 12 C 0.068 3.932 13 H 0.091 0.909 14 N -0.345 5.345 15 C -0.376 4.376 16 H 0.087 0.913 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.128 4.128 24 C -0.142 4.142 25 C -0.177 4.177 26 C -0.161 4.161 27 C -0.142 4.142 28 C -0.178 4.178 29 C -0.147 4.147 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.239 0.761 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.124 0.876 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.378 -0.148 -21.101 22.044 hybrid contribution -0.953 -0.119 0.667 1.170 sum 5.424 -0.268 -20.433 21.143 Atomic orbital electron populations 1.21609 0.78816 1.02654 1.02645 1.45713 1.08110 1.08636 1.75396 1.19507 0.87712 0.83964 0.76001 1.90726 1.69420 1.31283 1.48573 1.22387 0.93743 1.02877 0.95554 1.19745 0.80952 0.82727 0.84445 1.90701 1.34691 1.28571 1.87043 1.45644 1.52261 1.31511 1.05117 1.21576 0.99100 0.95404 0.80401 0.88420 1.24290 0.96913 1.01139 0.99228 1.21369 0.91465 0.92925 0.87419 0.90867 1.42347 1.07888 1.83196 1.01091 1.19244 0.85913 1.40728 0.91681 0.91279 1.24735 0.97586 1.02466 0.95891 1.69643 1.31912 1.55364 1.01060 0.86285 0.84619 0.77980 0.77397 1.21272 1.21683 1.21245 1.23433 0.98765 0.94699 0.95904 1.22463 0.95508 0.98334 0.97883 1.22821 0.96444 0.98857 0.99573 1.22633 0.96910 0.96422 1.00090 1.22889 1.01785 0.97046 0.92464 1.22900 1.02939 0.95622 0.96366 1.22824 1.01097 0.94679 0.96059 0.90382 0.91688 0.92013 0.76148 0.76213 0.89499 0.92497 0.77781 0.93396 0.88420 0.91864 0.90999 0.91875 0.92297 0.89608 0.87646 0.90701 0.89767 0.90336 0.88935 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.71 59.85 0.64 1.38 16 2 N -0.73 -7.02 5.71 -67.08 -0.38 -7.41 16 3 C 0.54 6.35 6.31 -10.99 -0.07 6.28 16 4 O -0.52 -7.61 15.95 5.56 0.09 -7.52 16 5 C -0.14 -1.47 1.04 -156.00 -0.16 -1.63 16 6 C 0.54 7.01 6.83 -10.99 -0.08 6.94 16 7 O -0.53 -8.35 15.56 5.56 0.09 -8.27 16 8 N -0.70 -9.31 4.71 -53.37 -0.25 -9.56 16 9 C 0.14 2.13 4.16 -67.48 -0.28 1.85 16 10 H 0.10 1.56 7.42 -51.93 -0.39 1.18 16 11 C -0.17 -3.04 7.68 -25.75 -0.20 -3.24 16 12 C 0.18 3.48 4.27 -67.48 -0.29 3.20 16 13 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 14 N -0.71 -17.12 5.30 -52.99 -0.28 -17.40 16 15 C -0.24 -6.65 9.97 -15.06 -0.15 -6.80 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.13 -2.00 0.92 -154.71 -0.14 -2.14 16 24 C -0.10 -1.66 7.15 -26.28 -0.19 -1.84 16 25 C -0.14 -1.90 8.08 -25.75 -0.21 -2.11 16 26 C -0.12 -1.78 7.62 -26.28 -0.20 -1.98 16 27 C -0.10 -0.90 6.95 -25.83 -0.18 -1.08 16 28 C -0.14 -1.11 7.81 -25.82 -0.20 -1.31 16 29 C -0.11 -1.02 7.09 -25.92 -0.18 -1.20 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 3.29 8.83 -40.82 -0.36 2.92 16 34 H 0.40 5.26 8.38 -40.82 -0.34 4.92 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.39 9.88 6.23 -40.82 -0.25 9.63 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.10 1.79 7.03 -51.93 -0.36 1.42 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.76 7.58 -51.93 -0.39 0.37 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.11 0.97 7.54 -51.93 -0.39 0.58 16 46 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.94 7.34 -51.93 -0.38 0.56 16 50 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -31.93 403.58 -9.27 -41.20 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -8.33 Total: 16.69 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.98 Total: -4.08 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.19 Total: -61.23 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.18 Total: -15.79 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.93 -9.27 -41.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.682 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds