Wall clock time and date at job start Tue Mar 31 2020 18:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00143 * 2 1 4 4 O 1.21277 * 119.99683 * 354.98139 * 3 2 1 5 5 C 1.50696 * 119.99842 * 174.98306 * 3 2 1 6 6 C 1.50694 * 112.85122 * 294.18508 * 5 3 2 7 7 O 1.21282 * 120.00110 * 123.82990 * 6 5 3 8 8 N 1.34773 * 120.00104 * 303.82908 * 6 5 3 9 9 C 1.46506 * 120.00243 * 174.94737 * 8 6 5 10 10 H 1.08997 * 112.88205 * 23.65910 * 9 8 6 11 11 C 1.53951 * 113.66174 * 252.18786 * 9 8 6 12 12 C 1.53945 * 87.29663 * 270.25934 * 11 9 8 13 13 H 1.09002 * 113.66666 * 89.73733 * 12 11 9 14 14 N 1.46501 * 113.66639 * 220.79920 * 12 11 9 15 15 C 1.36932 * 119.99837 * 252.19128 * 14 12 11 16 16 H 1.08001 * 120.00365 * 359.97438 * 15 14 12 17 17 C 1.38817 * 120.00241 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99403 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00201 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47423 * 59.99995 * 19 17 15 21 21 H 1.48502 * 109.47526 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47371 * 299.99837 * 19 17 15 23 23 C 1.52909 * 86.78533 * 335.26938 * 12 11 9 24 24 C 1.52918 * 121.13674 * 259.18297 * 23 12 11 25 25 C 1.53949 * 86.77992 * 209.37578 * 24 23 12 26 26 C 1.52906 * 121.14229 * 150.61462 * 23 12 11 27 27 C 1.53779 * 113.61615 * 65.38342 * 5 3 2 28 28 C 1.53960 * 87.02015 * 89.22631 * 27 5 3 29 29 C 1.53782 * 87.10939 * 25.36295 * 28 27 5 30 30 H 1.09004 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47260 * 299.99925 * 1 2 3 32 32 H 1.09002 * 109.47111 * 60.00149 * 1 2 3 33 33 H 0.97006 * 119.99639 * 179.97438 * 2 1 3 34 34 H 0.97004 * 120.00152 * 354.95000 * 8 6 5 35 35 H 1.09008 * 113.57347 * 155.65355 * 11 9 8 36 36 H 1.08997 * 113.58312 * 24.86609 * 11 9 8 37 37 H 0.96998 * 120.00296 * 72.18185 * 14 12 11 38 38 H 0.97004 * 119.99580 * 179.97438 * 18 17 15 39 39 H 1.09002 * 113.66024 * 323.84977 * 24 23 12 40 40 H 1.08994 * 113.66218 * 94.90657 * 24 23 12 41 41 H 1.09003 * 113.58191 * 270.12994 * 25 24 23 42 42 H 1.08998 * 113.64823 * 139.34667 * 25 24 23 43 43 H 1.08995 * 113.66306 * 265.09291 * 26 23 12 44 44 H 1.09001 * 113.65989 * 36.15589 * 26 23 12 45 45 H 1.08993 * 113.61652 * 203.74542 * 27 5 3 46 46 H 1.09004 * 113.61301 * 334.65093 * 27 5 3 47 47 H 1.09000 * 113.53554 * 270.81518 * 28 27 5 48 48 H 1.08997 * 113.74194 * 139.94469 * 28 27 5 49 49 H 1.09001 * 113.61338 * 220.08846 * 29 28 27 50 50 H 1.08997 * 113.69082 * 89.20020 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5360 2.2155 -0.0919 5 6 3.6415 1.1696 0.1141 6 6 4.1281 0.6576 1.4453 7 8 4.9028 -0.2745 1.4900 8 7 3.7025 1.2354 2.5860 9 6 4.0869 0.6695 3.8816 10 1 5.0014 0.0786 3.8314 11 6 2.9317 -0.0366 4.6145 12 6 2.6098 1.3219 5.2633 13 1 1.9087 1.9264 4.6878 14 7 2.2522 1.2267 6.6808 15 6 0.9548 1.4193 7.0740 16 1 0.1951 1.6418 6.3392 17 6 0.6158 1.3285 8.4171 18 7 1.5414 1.0568 9.3124 19 14 -1.1540 1.5920 8.9535 20 1 -2.0259 0.5865 8.2948 21 1 -1.2519 1.4427 10.4278 22 1 -1.5912 2.9568 8.5647 23 6 4.0752 1.6866 5.0233 24 6 5.1026 1.6179 6.1539 25 6 5.8514 2.7485 5.4252 26 6 4.5019 3.1370 4.7944 27 6 4.3518 0.5283 -1.0896 28 6 4.3473 1.9261 -1.7348 29 6 4.2892 2.4987 -0.3088 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.9499 -0.8401 0.0004 34 1 3.1416 2.0260 2.5493 35 1 3.2643 -0.7920 5.3266 36 1 2.1486 -0.3981 3.9481 37 1 2.9344 1.0270 7.3407 38 1 1.3046 0.9938 10.2510 39 1 4.7045 1.9118 7.1251 40 1 5.6541 0.6784 6.1872 41 1 6.5840 2.3907 4.7016 42 1 6.2547 3.5082 6.0947 43 1 4.5736 3.4110 3.7419 44 1 3.9351 3.8579 5.3836 45 1 5.3504 0.1565 -0.8601 46 1 3.7393 -0.2006 -1.6204 47 1 3.4535 2.1306 -2.3242 48 1 5.2684 2.1676 -2.2651 49 1 3.6263 3.3584 -0.2101 50 1 5.2700 2.6674 0.1358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203640555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:07 Heat of formation + Delta-G solvation = -16.101799 kcal Electronic energy + Delta-G solvation = -30634.485183 eV Core-core repulsion = 26663.166318 eV Total energy + Delta-G solvation = -3971.318866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46747 -41.59279 -39.82555 -38.08073 -36.47247 -35.79248 -35.69430 -33.89993 -31.75596 -29.43316 -27.40034 -26.75447 -26.49958 -26.32262 -25.39511 -24.03703 -22.75489 -22.29134 -21.47389 -20.41439 -19.66435 -19.36533 -18.57848 -17.37485 -17.25967 -17.10955 -16.78169 -16.51649 -16.34654 -15.95245 -15.77807 -15.56089 -15.41652 -15.11677 -14.49651 -14.24636 -13.95283 -13.87625 -13.57230 -13.50210 -13.36025 -13.24584 -13.19147 -13.00102 -12.82417 -12.75237 -12.59944 -12.46538 -12.21599 -12.02675 -11.98686 -11.84974 -11.47074 -11.35871 -11.22672 -11.08217 -10.87179 -10.75077 -10.66788 -10.23459 -10.03834 -8.96482 -7.95114 -5.22594 1.20555 1.45214 1.46162 1.48180 1.54311 1.98085 2.09095 2.55328 3.31860 3.35255 3.38727 3.42102 3.55102 3.61761 3.66375 3.77041 3.78208 3.92067 3.97425 4.13137 4.26533 4.31916 4.43205 4.55000 4.57703 4.60156 4.66225 4.70501 4.79976 4.81176 4.89803 4.93696 4.95451 4.95572 4.99585 5.04204 5.04854 5.09091 5.10204 5.19092 5.29581 5.36723 5.46048 5.48736 5.59851 5.64332 6.26858 6.31378 6.40520 6.99618 7.06228 7.34043 8.10906 8.35141 9.27728 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003566 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.087123 B = 7849.237022 C = 9233.447410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.541 3.459 4 O -0.557 6.557 5 C -0.139 4.139 6 C 0.542 3.458 7 O -0.556 6.556 8 N -0.694 5.694 9 C 0.163 3.837 10 H 0.099 0.901 11 C -0.168 4.168 12 C 0.166 3.834 13 H 0.068 0.932 14 N -0.719 5.719 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.071 4.071 18 N -0.967 5.967 19 Si 0.968 3.032 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.279 1.279 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.099 4.099 28 C -0.130 4.130 29 C -0.110 4.110 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.413 0.587 34 H 0.406 0.594 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.378 0.622 38 H 0.251 0.749 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.081 -0.199 -23.497 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.326 3.674 4 O -0.435 6.435 5 C -0.145 4.145 6 C 0.328 3.672 7 O -0.434 6.434 8 N -0.342 5.342 9 C 0.057 3.943 10 H 0.117 0.883 11 C -0.210 4.210 12 C 0.056 3.944 13 H 0.086 0.914 14 N -0.357 5.357 15 C -0.377 4.377 16 H 0.090 0.910 17 C -0.263 4.263 18 N -0.617 5.617 19 Si 0.798 3.202 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.205 1.205 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.160 4.160 26 C -0.156 4.156 27 C -0.137 4.137 28 C -0.168 4.168 29 C -0.147 4.147 30 H 0.125 0.875 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.211 0.789 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.122 0.878 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.117 0.883 49 H 0.101 0.899 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.940 -0.095 -23.485 24.489 hybrid contribution -1.138 -0.181 1.322 1.754 sum 5.801 -0.276 -22.162 22.911 Atomic orbital electron populations 1.21715 0.78148 1.04341 1.01790 1.45757 1.08682 1.08546 1.74175 1.19694 0.88110 0.83952 0.75611 1.90713 1.70069 1.32432 1.50285 1.22434 0.93248 1.04284 0.94572 1.20112 0.80217 0.82007 0.84904 1.90696 1.35748 1.29513 1.87435 1.45606 1.52369 1.31625 1.04642 1.21222 0.97818 0.94404 0.80902 0.88339 1.24112 0.97982 0.99766 0.99109 1.21631 0.93584 0.94232 0.84994 0.91372 1.42473 1.06760 1.83569 1.02912 1.19608 0.87231 1.38986 0.91846 0.91025 1.25480 1.01257 1.03455 0.96119 1.69795 1.33649 1.57352 1.00913 0.85292 0.80371 0.78103 0.76482 1.20580 1.22189 1.20534 1.23312 0.96102 0.96300 0.96256 1.22436 0.96067 0.99772 0.96660 1.22762 0.96105 0.97738 0.99406 1.22595 0.97127 0.94718 1.01198 1.22916 1.01545 0.97821 0.91369 1.22853 1.03831 0.94545 0.95543 1.22888 1.01067 0.93601 0.97193 0.87486 0.93525 0.91868 0.75133 0.75838 0.90815 0.92493 0.78870 0.94022 0.91305 0.91233 0.89127 0.90919 0.90284 0.91074 0.87802 0.89423 0.90034 0.88350 0.89881 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.71 127.77 1.37 2.69 16 2 N -0.72 -12.80 5.71 -484.53 -2.77 -15.57 16 3 C 0.54 11.93 6.31 87.66 0.55 12.48 16 4 O -0.56 -15.76 15.95 -3.02 -0.05 -15.81 16 5 C -0.14 -2.68 1.04 -53.15 -0.06 -2.74 16 6 C 0.54 13.16 6.83 87.66 0.60 13.76 16 7 O -0.56 -16.32 15.56 -3.04 -0.05 -16.37 16 8 N -0.69 -17.52 4.71 -441.15 -2.08 -19.60 16 9 C 0.16 4.75 4.16 45.28 0.19 4.94 16 10 H 0.10 2.98 7.42 -2.39 -0.02 2.97 16 11 C -0.17 -5.86 7.68 31.23 0.24 -5.62 16 12 C 0.17 6.45 4.27 45.28 0.19 6.65 16 13 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 14 N -0.72 -35.69 5.30 -321.57 -1.70 -37.40 16 15 C -0.24 -13.52 9.97 84.04 0.84 -12.69 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 19 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C -0.12 -3.67 0.92 -52.31 -0.05 -3.72 16 24 C -0.11 -3.51 7.15 30.89 0.22 -3.29 16 25 C -0.12 -3.11 8.08 31.23 0.25 -2.85 16 26 C -0.12 -3.27 7.62 30.88 0.24 -3.03 16 27 C -0.10 -1.46 6.95 31.18 0.22 -1.24 16 28 C -0.13 -1.71 7.81 31.18 0.24 -1.47 16 29 C -0.11 -1.82 7.09 31.12 0.22 -1.60 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.41 5.89 8.83 -92.70 -0.82 5.07 16 34 H 0.41 10.06 8.38 -92.71 -0.78 9.28 16 35 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.38 20.00 6.23 -92.71 -0.58 19.42 16 38 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.07 2.60 7.03 -2.39 -0.02 2.59 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.86 7.58 -2.39 -0.02 1.84 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 1.64 7.54 -2.39 -0.02 1.62 16 46 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 47 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.08 1.57 7.34 -2.39 -0.02 1.55 16 50 H 0.10 1.53 8.09 -2.39 -0.02 1.51 16 Total: -1.00 -69.22 403.58 0.19 -69.03 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -1.21 Total: 47.27 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.73 Total: -1.30 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -6.27 Total: -130.95 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.10 Total: -32.18 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -69.22 0.19 -69.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.926 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds