Wall clock time and date at job start Tue Mar 31 2020 18:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 111.00157 * 2 1 4 4 C 1.46898 * 110.99808 * 123.94576 * 2 1 3 5 5 C 1.50707 * 109.46933 * 66.04821 * 4 2 1 6 6 C 1.40360 * 126.64665 * 260.02090 * 5 4 2 7 7 C 1.35130 * 107.11653 * 180.02562 * 6 5 4 8 8 O 1.33929 * 108.76467 * 0.02562 * 7 6 5 9 9 C 1.34910 * 109.38631 * 359.73049 * 8 7 6 10 10 C 1.46658 * 125.98865 * 180.30758 * 9 8 7 11 11 O 1.21698 * 119.99701 * 172.85979 * 10 9 8 12 12 N 1.34770 * 120.00016 * 352.85923 * 10 9 8 13 13 C 1.46928 * 120.63311 * 3.63641 * 12 10 9 14 14 C 1.52756 * 109.01198 * 233.58608 * 13 12 10 15 15 C 1.53039 * 109.38308 * 305.58592 * 14 13 12 16 16 C 1.53004 * 109.45129 * 181.25066 * 15 14 13 17 17 N 1.46500 * 109.46564 * 64.94023 * 16 15 14 18 18 C 1.36940 * 119.99774 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00009 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99911 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99972 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00286 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47028 * 89.99569 * 22 20 18 24 24 H 1.48494 * 109.47371 * 209.99966 * 22 20 18 25 25 H 1.48504 * 109.46808 * 329.99803 * 22 20 18 26 26 C 1.53042 * 109.53975 * 61.23861 * 15 14 13 27 27 C 1.46927 * 120.63188 * 183.91710 * 12 10 9 28 28 H 1.09001 * 109.47058 * 60.00192 * 1 2 3 29 29 H 1.08999 * 109.47548 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47595 * 300.00756 * 1 2 3 31 31 H 1.08996 * 109.47367 * 63.94792 * 3 2 1 32 32 H 1.08996 * 109.47110 * 183.95652 * 3 2 1 33 33 H 1.09000 * 109.46759 * 303.94579 * 3 2 1 34 34 H 1.08999 * 109.47259 * 186.04434 * 4 2 1 35 35 H 1.09004 * 109.47685 * 306.04899 * 4 2 1 36 36 H 1.08009 * 126.44204 * 0.02740 * 6 5 4 37 37 H 1.08003 * 125.61618 * 180.02562 * 7 6 5 38 38 H 1.08999 * 109.58089 * 353.42207 * 13 12 10 39 39 H 1.09007 * 109.58700 * 113.84095 * 13 12 10 40 40 H 1.09000 * 109.56739 * 185.55158 * 14 13 12 41 41 H 1.08997 * 109.35947 * 65.49490 * 14 13 12 42 42 H 1.08996 * 109.46368 * 301.22063 * 15 14 13 43 43 H 1.08998 * 109.46715 * 184.93786 * 16 15 14 44 44 H 1.08991 * 109.47002 * 304.94122 * 16 15 14 45 45 H 0.97001 * 120.00190 * 0.02562 * 17 16 15 46 46 H 0.96996 * 120.00089 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.50353 * 178.68407 * 26 15 14 48 48 H 1.09007 * 109.49657 * 58.58494 * 26 15 14 49 49 H 1.09000 * 109.58870 * 246.15737 * 27 12 10 50 50 H 1.09003 * 109.58739 * 6.43974 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7658 1.1377 5 6 1.6368 -2.2203 0.9731 6 6 0.5818 -2.8995 1.6022 7 6 0.6224 -4.1807 1.1744 8 8 1.6448 -4.3175 0.3202 9 6 2.2726 -3.1317 0.1797 10 6 3.4358 -2.8683 -0.6738 11 8 3.8378 -1.7289 -0.8199 12 7 4.0596 -3.8879 -1.2963 13 6 3.5393 -5.2582 -1.1940 14 6 4.6571 -6.1800 -0.7100 15 6 5.8699 -6.0352 -1.6320 16 6 6.9792 -6.9808 -1.1670 17 7 6.5353 -8.3682 -1.3231 18 6 7.3671 -9.3970 -0.9697 19 1 8.3501 -9.1857 -0.5755 20 6 6.9463 -10.7116 -1.1171 21 7 7.7455 -11.7005 -0.7769 22 14 5.2458 -11.0772 -1.7983 23 1 5.3199 -11.1964 -3.2767 24 1 4.7457 -12.3517 -1.2233 25 1 4.3199 -9.9740 -1.4364 26 6 6.3779 -4.5922 -1.5867 27 6 5.2764 -3.6514 -2.0852 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7043 1.8724 0.9232 32 1 3.0827 1.3432 -0.0709 33 1 1.5899 1.9162 -0.8525 34 1 3.0796 -0.6610 1.1757 35 1 1.5610 -0.3870 2.0629 36 1 -0.1290 -2.4775 2.2974 37 1 -0.0576 -4.9651 1.4724 38 1 2.7134 -5.2832 -0.4832 39 1 3.1925 -5.5913 -2.1722 40 1 4.3102 -7.2133 -0.7248 41 1 4.9379 -5.9046 0.3065 42 1 5.5823 -6.2869 -2.6527 43 1 7.8732 -6.8155 -1.7683 44 1 7.2056 -6.7875 -0.1185 45 1 5.6526 -8.5580 -1.6776 46 1 7.4517 -12.6190 -0.8802 47 1 7.2557 -4.4952 -2.2254 48 1 6.6425 -4.3317 -0.5618 49 1 5.0741 -3.8509 -3.1375 50 1 5.5948 -2.6160 -1.9642 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206057539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:49 Heat of formation + Delta-G solvation = 15.181441 kcal Electronic energy + Delta-G solvation = -29846.855841 eV Core-core repulsion = 25876.893518 eV Total energy + Delta-G solvation = -3969.962323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.04212 -39.96508 -38.02773 -37.46457 -35.12453 -33.60531 -32.84929 -31.51919 -30.68734 -30.18483 -27.82459 -27.76086 -26.74688 -24.18973 -23.37996 -22.84668 -22.29215 -21.73787 -20.98323 -20.06478 -19.28550 -17.75101 -17.48172 -16.75408 -16.62000 -15.95512 -15.46594 -15.41827 -15.01246 -14.92095 -14.61572 -14.37522 -14.28866 -14.07329 -13.52118 -13.46649 -13.40878 -13.12452 -12.84022 -12.65622 -12.49290 -12.43639 -12.10906 -11.96050 -11.91798 -11.87036 -11.72814 -11.38977 -11.14901 -10.90964 -10.52785 -10.35679 -10.25320 -10.15266 -10.07021 -9.98423 -9.57717 -8.95529 -8.89133 -8.59887 -8.51456 -7.21920 -5.76392 -3.11544 0.88102 2.06876 2.41209 2.96210 3.09943 3.35380 3.38407 3.44244 3.87506 4.30739 4.41132 4.55854 4.58691 4.84646 4.88672 4.93996 4.98475 5.03423 5.11001 5.11910 5.17751 5.21880 5.31425 5.31918 5.39272 5.48391 5.50506 5.55886 5.63264 5.68632 5.70858 5.73298 5.74247 5.86182 5.92484 5.96978 6.05061 6.09603 6.18081 6.33965 6.37831 6.53578 6.64876 6.71061 6.79558 6.82047 6.83166 7.28295 8.00460 8.00964 8.42817 9.22105 9.94394 10.14602 11.42230 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020061 B = 0.002646 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.406539 B =10579.261102 C =11510.674378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.530 5.530 3 C 0.030 3.970 4 C 0.124 3.876 5 C -0.090 4.090 6 C -0.220 4.220 7 C -0.016 4.016 8 O -0.154 6.154 9 C -0.052 4.052 10 C 0.599 3.401 11 O -0.508 6.508 12 N -0.601 5.601 13 C 0.089 3.911 14 C -0.126 4.126 15 C -0.099 4.099 16 C 0.163 3.837 17 N -0.756 5.756 18 C -0.242 4.242 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.885 3.115 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.126 4.126 27 C 0.115 3.885 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.152 0.848 37 H 0.208 0.792 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 24.099 2.799 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.254 5.254 3 C -0.118 4.118 4 C -0.003 4.003 5 C -0.094 4.094 6 C -0.239 4.239 7 C -0.085 4.085 8 O -0.050 6.050 9 C -0.104 4.104 10 C 0.387 3.613 11 O -0.385 6.385 12 N -0.334 5.334 13 C -0.032 4.032 14 C -0.164 4.164 15 C -0.118 4.118 16 C 0.036 3.964 17 N -0.401 5.401 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.164 4.164 27 C -0.006 4.006 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.169 0.831 37 H 0.224 0.776 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.371 24.109 2.199 29.225 hybrid contribution -1.723 -0.256 0.473 1.805 sum -18.094 23.854 2.672 30.059 Atomic orbital electron populations 1.22427 0.87788 1.02121 1.00214 1.61843 1.07302 1.13658 1.42551 1.22333 1.01371 0.88139 0.99955 1.20467 1.01289 0.87355 0.91226 1.20317 0.95546 0.96236 0.97284 1.21675 1.01909 0.94245 1.06110 1.24499 0.91543 0.98897 0.93548 1.84271 1.36294 1.32411 1.52050 1.21967 0.99505 0.83758 1.05195 1.16650 0.80869 0.84904 0.78908 1.90863 1.64873 1.20377 1.62370 1.48038 1.27437 1.07915 1.49979 1.22317 0.97776 0.80537 1.02598 1.21863 0.94890 0.99821 0.99806 1.21379 0.96090 0.94579 0.99714 1.20646 0.94054 0.83804 0.97930 1.42729 1.16967 1.01353 1.79081 1.19071 0.97848 0.84903 1.35381 0.89285 1.24683 0.97728 0.95456 1.01462 1.69703 1.36049 0.98512 1.54076 0.86542 0.85548 0.77335 0.79045 1.21111 1.21777 1.20337 1.21911 0.97667 0.94451 1.02392 1.21671 0.83569 1.01014 0.94385 0.91577 0.91357 0.95979 0.96061 0.90868 0.91466 0.88787 0.94130 0.83067 0.77590 0.87461 0.91206 0.89953 0.91467 0.90997 0.95450 0.95607 0.80705 0.93094 0.90273 0.91361 0.91306 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.43 60.06 0.57 0.76 16 2 N -0.53 -5.57 4.95 -252.73 -1.25 -6.82 16 3 C 0.03 0.26 9.57 60.07 0.57 0.84 16 4 C 0.12 1.29 4.53 -4.97 -0.02 1.27 16 5 C -0.09 -0.99 4.76 -104.43 -0.50 -1.49 16 6 C -0.22 -1.87 10.10 -39.89 -0.40 -2.27 16 7 C -0.02 -0.13 12.08 29.63 0.36 0.23 16 8 O -0.15 -1.68 7.07 5.01 0.04 -1.65 16 9 C -0.05 -0.64 6.85 -36.80 -0.25 -0.89 16 10 C 0.60 8.29 7.66 -12.86 -0.10 8.19 16 11 O -0.51 -7.86 14.49 5.19 0.08 -7.79 16 12 N -0.60 -7.70 2.98 -174.57 -0.52 -8.22 16 13 C 0.09 1.10 6.28 -3.93 -0.02 1.07 16 14 C -0.13 -1.78 5.23 -26.84 -0.14 -1.92 16 15 C -0.10 -1.45 2.19 -90.58 -0.20 -1.65 16 16 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 17 N -0.76 -17.72 5.12 -59.91 -0.31 -18.02 16 18 C -0.24 -6.86 10.47 -15.06 -0.16 -7.02 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 21 N -0.94 -29.45 13.97 55.49 0.78 -28.68 16 22 Si 0.88 21.91 27.74 -169.99 -4.71 17.19 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 26 C -0.13 -1.54 5.36 -26.61 -0.14 -1.69 16 27 C 0.12 1.36 6.43 -3.71 -0.02 1.34 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.61 6.59 -51.93 -0.34 0.27 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.11 7.14 -51.93 -0.37 0.73 16 35 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.21 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.11 1.28 3.76 -55.38 -0.21 1.07 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.36 8.15 4.71 -40.82 -0.19 7.96 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 1.11 7.02 -51.93 -0.36 0.75 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -33.70 391.93 -8.78 -42.49 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.20 Total: 5.78 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.58 Total: -0.19 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -1.30 Total: -61.74 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.11 Total: -9.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.70 -8.78 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206057539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.670 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds